Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold242
Parameters: 2 7 7 80 10 50 1000
Length:  61083

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2650--2702
23
2.4
22
76
20
56
9
18
1
69
1.25
5537--5655
59
2.0
59
96
0
220
36
13
6
42
1.71
7233--7297
20
3.3
19
73
16
51
38
16
21
23
1.93
11717--11767
27
1.9
26
84
4
66
17
23
19
39
1.92
11807--11865
27
2.2
27
87
3
84
25
22
15
37
1.93
21856--21905
13
3.6
13
80
15
55
72
2
6
20
1.16
22940--22991
12
4.6
12
76
13
56
67
1
17
13
1.32
22950--22992
21
2.0
22
90
9
70
72
2
13
11
1.22
23012--23049
13
2.8
13
82
17
51
73
0
18
7
1.06
22948--23049
12
8.0
12
66
26
50
69
1
17
10
1.26
23013--23063
21
2.4
21
74
6
50
74
1
17
5
1.11
23066--23128
33
1.9
33
84
12
85
53
6
26
12
1.62
24904--24957
20
2.7
20
82
0
63
24
20
18
37
1.94
24904--24977
30
2.5
30
86
8
98
21
20
18
39
1.93
24904--24968
20
3.2
20
71
16
53
23
21
16
38
1.93
26639--26663
13
1.9
13
100
0
50
80
4
0
16
0.87
27589--27646
18
3.1
18
77
7
62
74
3
15
6
1.17
29686--29717
16
2.0
16
100
0
64
12
12
25
50
1.75
34752--34801
21
2.4
21
86
6
66
80
4
16
0
0.87
34752--34819
5
13.0
5
75
17
59
77
2
16
2
1.00
34763--34819
16
3.7
14
80
17
60
77
1
17
3
1.00
34882--34937
18
3.1
18
74
5
51
67
1
19
10
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34888--34969
30
2.7
30
81
5
85
63
0
21
14
1.30
34947--34991
12
3.8
12
85
2
56
64
0
22
13
1.28
44851--44891
13
3.0
13
89
7
55
14
9
2
73
1.19
45190--45233
22
2.0
22
95
0
79
34
4
36
25
1.76
46808--46847
19
2.1
19
85
0
53
25
35
17
22
1.95
50915--50975
30
2.0
30
83
0
77
29
21
6
42
1.78
54790--54838
10
4.8
10
80
14
55
40
22
22
14
1.90

Tables:   1

The End!