Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1175
Parameters: 2 7 7 80 10 50 1000
Length:  49065

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2779--2831
23
2.4
22
76
20
56
9
18
1
69
1.25
7834--7930
30
3.2
31
73
5
101
27
28
15
27
1.96
8788--8836
20
2.3
20
82
10
53
32
8
14
44
1.74
10775--10799
12
2.1
12
100
0
50
76
0
16
8
1.02
10769--10824
18
3.1
18
76
5
51
69
3
19
7
1.27
10775--10856
30
2.7
31
81
5
105
64
1
21
12
1.33
12566--12663
30
3.3
30
75
0
97
29
16
26
27
1.97
14377--14441
20
3.3
19
73
16
51
38
16
21
23
1.93
16214--16276
33
1.9
33
84
12
85
12
26
6
53
1.62
16291--16332
17
2.4
18
84
11
61
14
19
0
66
1.25
16294--16358
27
2.4
27
85
12
80
12
18
0
69
1.19
16365--16422
17
3.4
17
80
2
62
6
13
6
72
1.26
16391--16425
11
3.2
11
91
0
52
0
14
5
80
0.89
16322--16425
6
17.2
6
66
7
50
7
17
3
71
1.25
17437--17483
20
2.3
20
81
0
58
29
34
12
23
1.92
19030--19065
10
3.8
9
89
10
54
86
2
8
2
0.77
19030--19073
11
4.3
10
83
11
54
81
2
11
4
0.92
19015--19073
21
2.8
20
82
17
66
76
3
15
5
1.10
21888--21934
20
2.3
20
81
0
58
29
34
12
23
1.92
23427--23492
23
2.9
22
75
8
60
12
9
6
72
1.26
23450--23475
13
2.0
13
100
0
52
23
0
7
69
1.14
25096--25160
20
3.3
19
75
16
60
38
15
21
24
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25096--25160
10
6.5
10
71
13
53
38
15
21
24
1.92
26551--26597
20
2.3
20
85
0
67
21
12
36
29
1.91
28266--28371
48
2.2
48
85
9
137
14
24
1
59
1.45
29450--29487
12
3.2
12
88
3
51
13
5
7
73
1.22
31910--32168
75
3.3
76
85
10
312
25
22
27
24
2.00
31948--32168
38
5.7
37
89
6
273
26
21
27
24
1.99
31910--32168
40
6.7
40
87
9
290
25
22
27
24
2.00
38922--39182
39
6.7
38
85
8
278
26
21
26
25
1.99
42227--42272
12
3.8
12
85
8
58
76
2
6
15
1.09
42227--42259
12
2.6
13
95
4
59
78
0
6
15
0.93
42252--42278
14
1.9
14
100
0
54
70
7
7
14
1.32
44528--44581
23
2.2
25
78
15
60
62
3
22
11
1.43

Tables:   1

The End!