Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1424

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21621
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29


Found at i:2522 original size:38 final size:39

Alignment explanation


    Indices: 2450--2525  Score: 136
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       2440 TTTTCGGGTT

                                  *                
       2450 GTTTCAGAAAACCGATGGAATTTAAACTTATATAGTTTG
          1 GTTTCAGAAAACCGATGGAATTAAAACTTATATAGTTTG

                                                  
       2489 GTTTCAGAAAACCGATGGAATTAAAACTT-TATAGTTT
          1 GTTTCAGAAAACCGATGGAATTAAAACTTATATAGTTT

       2526 TGAATCAAGA


Statistics
Matches: 36,  Mismatches: 1, Indels: 1
        0.95            0.03        0.03

Matches are distributed among these distances:
  38    8  0.22
  39   28  0.78

ACGTcount: A:0.37, C:0.11, G:0.17, T:0.36


Consensus pattern (39 bp):   
GTTTCAGAAAACCGATGGAATTAAAACTTATATAGTTTG
Done.