Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3290
Parameters: 2 7 7 80 10 50 1000
Length:  42336

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6823--7046
40
5.7
40
81
7
224
25
28
21
25
1.99
6790--7046
40
6.5
38
78
10
200
24
28
21
26
1.99
6823--7046
79
2.8
78
78
9
213
25
28
21
25
1.99
6978--7055
40
1.9
41
82
10
97
26
28
20
24
1.99
8916--9080
45
3.7
44
82
6
179
16
20
17
45
1.86
8918--9042
46
2.7
46
88
1
180
16
21
15
46
1.84
9062--9219
45
3.5
45
89
0
235
27
21
14
36
1.92
20543--20750
27
7.7
27
77
11
167
24
14
19
41
1.89
20544--20750
54
3.8
54
79
6
213
24
14
19
41
1.89
20544--20750
81
2.6
81
82
4
247
24
14
19
41
1.89
20957--20991
17
2.0
18
88
5
54
20
40
28
11
1.87
22119--22172
25
2.2
25
86
0
72
18
48
9
24
1.77
23905--23946
21
2.0
21
85
0
57
11
9
23
54
1.66
24987--27015
681
3.0
679
92
2
3373
29
19
15
35
1.93
31519--31543
13
1.9
13
100
0
50
88
4
8
0
0.64
32549--32732
40
4.6
40
81
6
187
23
21
27
27
1.99
32629--32779
40
3.8
39
80
6
117
24
22
28
24
1.99
40459--40588
40
3.3
40
84
2
172
23
20
27
28
1.99
40459--40625
79
2.1
79
81
6
187
23
20
28
26
1.99

Tables:   1

The End!