Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1664

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23430
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:2556 original size:23 final size:22

Alignment explanation


    Indices: 2526--2568  Score: 61
    Period size: 23  Copynumber: 1.9  Consensus size: 22

       2516 CTTAGTTAAC

                                    
       2526 ATTTATGT-TACTATTAATGTAAA
          1 ATTTATGTATA-TATT-ATGTAAA

                                
       2549 ATTTATGTATATATTATGTA
          1 ATTTATGTATATATTATGTA

       2569 TTTTGAGCCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  22    5  0.26
  23   12  0.63
  24    2  0.11

ACGTcount: A:0.37, C:0.02, G:0.09, T:0.51


Consensus pattern (22 bp):   
ATTTATGTATATATTATGTAAA

Found at i:13650 original size:23 final size:22

Alignment explanation


    Indices: 13620--13662  Score: 61
    Period size: 23  Copynumber: 1.9  Consensus size: 22

      13610 CTTAGTTAAC

                                    
      13620 ATTTATGT-TACTATTAATGTAAA
          1 ATTTATGTATA-TATT-ATGTAAA

                                
      13643 ATTTATGTATATATTATGTA
          1 ATTTATGTATATATTATGTA

      13663 TTTTGAGCCG


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  22    5  0.26
  23   12  0.63
  24    2  0.11

ACGTcount: A:0.37, C:0.02, G:0.09, T:0.51


Consensus pattern (22 bp):   
ATTTATGTATATATTATGTAAA
Done.