Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold247

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11018
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28


Found at i:1977 original size:15 final size:15

Alignment explanation


    Indices: 1957--1986  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1947 TTAATACTAT

                           
       1957 TGACAAGAAAGAAAA
          1 TGACAAGAAAGAAAA

                           
       1972 TGACAAGAAAGAAAA
          1 TGACAAGAAAGAAAA

       1987 AAAGTAATTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.67, C:0.07, G:0.20, T:0.07


Consensus pattern (15 bp):   
TGACAAGAAAGAAAA

Found at i:7348 original size:23 final size:23

Alignment explanation


    Indices: 7318--7364  Score: 85
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       7308 AAGAGAGGTA

                                   
       7318 CTTGCTGATTCTATTTAGCCCAT
          1 CTTGCTGATTCTATTTAGCCCAT

                              *    
       7341 CTTGCTGATTCTATTTAGTCCAT
          1 CTTGCTGATTCTATTTAGCCCAT

             
       7364 C
          1 C

       7365 AATGGGTTCC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.17, C:0.26, G:0.13, T:0.45


Consensus pattern (23 bp):   
CTTGCTGATTCTATTTAGCCCAT
Done.