Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2092
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64488
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Found at i:1691 original size:42 final size:42
Alignment explanation
Indices: 1587--1877 Score: 310
Period size: 42 Copynumber: 6.9 Consensus size: 42
1577 GAGCCTCCAT
*
1587 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
1630 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
1673 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
1715 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
1757 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
1799 CACCTTGGT-CTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
1840 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
1878 AAGCTAAAGT
Statistics
Matches: 209, Mismatches: 26, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
40 1 0.00
41 53 0.25
42 101 0.48
43 43 0.21
44 11 0.05
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:2113 original size:24 final size:24
Alignment explanation
Indices: 2086--2164 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
2076 CCGGTTAGGT
*
2086 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
2110 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
2134 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
2158 TTCCGGT
1 TCCCGGT
2165 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:2246 original size:42 final size:43
Alignment explanation
Indices: 2182--3324 Score: 846
Period size: 43 Copynumber: 27.2 Consensus size: 43
2172 GCCCTTGGTC
*
2182 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
2224 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGG-AT
* * * *
2268 -TGCAGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
**
2309 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
2351 CGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* ** **
2394 GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
2436 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
2479 GTGCGAGAACCTCGCGTACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
2521 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* ** **
2564 CGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * **
2607 CGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
2650 CGTGCGGGAGCCTCGGCCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* * ** **
2693 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
2735 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
2778 GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
2820 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
** **
2863 CGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
2906 CGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * **
2949 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
2991 CGTGCGGGAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ***
3034 GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * ** **
3076 CGTGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
3119 CGTGCGGGGGCCTCGGCCACCATCGGC--CCTTGGT-C------
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
3154 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
* * *
3197 GTGCGGGAG-C-C--G----ATCGGC-ACCTCGGTGGCTAGGAG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
* *
3232 GTGCGGGAGCCTCGGACACCATCGGCAA-CTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
3274 GTGCGGGAGCCTCGGGCACCCATCGGC-ACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGTG-CTTGGAT
3318 GTGCGGG
1 GTGCGGG
3325 CTAAAGAAGA
Statistics
Matches: 897, Mismatches: 156, Indels: 94
0.78 0.14 0.08
Matches are distributed among these distances:
34 24 0.03
35 36 0.04
36 1 0.00
37 2 0.00
39 1 0.00
40 1 0.00
41 6 0.01
42 283 0.32
43 527 0.59
44 16 0.02
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
Found at i:2289 original size:43 final size:43
Alignment explanation
Indices: 2169--3180 Score: 994
Period size: 43 Copynumber: 23.9 Consensus size: 43
2159 TCCGGTAGCA
2169 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
2212 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
2254 TAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
2296 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
2339 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
2381 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
2424 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
2466 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
2509 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
2552 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
2595 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
2638 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
2680 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
2723 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
2765 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
2808 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
2851 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
2894 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
2936 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
2979 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
3021 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
3064 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
3107 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
3141 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
3181 CCTTGGTGGC
Statistics
Matches: 787, Mismatches: 151, Indels: 64
0.79 0.15 0.06
Matches are distributed among these distances:
34 24 0.03
35 2 0.00
36 1 0.00
37 3 0.00
38 1 0.00
39 1 0.00
40 4 0.01
42 267 0.34
43 484 0.61
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:2318 original size:85 final size:84
Alignment explanation
Indices: 2169--3324 Score: 763
Period size: 85 Copynumber: 13.7 Consensus size: 84
2159 TCCGGTAGCA
* *
2169 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCT-TGATGTGCGGGAG
* *
2233 CCCCGGACACCATCGGCAAAC
64 CCTCGGACACCATCGGCAACC
* ** * *
2254 TAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGC
*
2319 CTCGGGCACCATCGGCAACC
65 CTCGGACACCATCGGCAACC
*
2339 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGATGTGCGGGAGC
**
2404 CTCGGACACTGTCGGCAACC
65 CTCGGACACCATCGGCAACC
* * * *
2424 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGC
*
2489 CTCGCG-TACCATCGGCAACC
65 CTCG-GACACCATCGGCAACC
* * * ** ** *
2509 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
* **
2574 CCTCGGCCACCATCGGCAAAA
64 CCTCGGACACCATCGGCAACC
* * * ** *
2595 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
*
2660 CCTCGGCCACCATCGGC-ACC
64 CCTCGGACACCATCGGCAACC
* ** * * * ** * ** *
2680 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
2744 GCCTC-GAGCACCATCGGC-ACC
63 GCCTCGGA-CACCATCGGCAACC
* ** * * * * * * ** * *
2765 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
* * *
2829 GGCTCGGGCACCATCGGCAAAC
63 GCCTCGGACACCATCGGCAACC
* ** * ** *
2851 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
* *
2916 CCTCGGCCACCATCGGC-TCC
64 CCTCGGACACCATCGGCAACC
** * * * * ** *
2936 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
*
3000 GCCTC-GAGCACCATCGAC-ACC
63 GCCTCGGA-CACCATCGGCAACC
* ** * * * *** * *
3021 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
* * * **
3085 GGCTCGGGCACCATCGGTAAAA
63 GCCTCGGACACCATCGGCAACC
* * *
3107 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-CCTTGGT-C-----GTGCGGGAGCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGCC
*
3165 TCGGGCACCATCGGC-ACC
66 TCGGACACCATCGGCAACC
* ** * * *
3183 TTGGTGGCTCGGAT-GTGCGGGAG-C-C--G----ATCGGCACCTCGGTGGCTAGGAGGTGCGGG
1 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT-GCT-TGATGTGCGGG
3239 AGCCTCGGACACCATCGGCAA-C
62 AGCCTCGGACACCATCGGCAACC
* ** * *
3261 TTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGATGTGCGGG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCACCTCGGTG-CT-TGATGTGCGGG
3325 CTAAAGAAGA
Statistics
Matches: 892, Mismatches: 138, Indels: 81
0.80 0.12 0.07
Matches are distributed among these distances:
69 6 0.01
70 6 0.01
72 1 0.00
75 1 0.00
76 5 0.01
77 51 0.06
78 32 0.04
79 2 0.00
81 1 0.00
83 1 0.00
84 13 0.01
85 533 0.60
86 240 0.27
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.18
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGCC
TCGGACACCATCGGCAACC
Found at i:2705 original size:256 final size:254
Alignment explanation
Indices: 2182--3207 Score: 1047
Period size: 256 Copynumber: 4.0 Consensus size: 254
2172 GCCCTTGGTC
* ** * *
2182 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGC-AGGAGCCCCG-GACAC
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGA-GAGCCTCGAG-CAC
* * * * ** **
2243 CATCGGCAAACTAAGCCCTTGGTAT-TGC-AGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTT
63 CATCGGC-ACCTAGGCCCTTGG-ATGTGCGA-GAACCTCGGGCACCATCGGCAACCTAAGCCCTT
* * ** *
2305 CGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGGC
125 -GGTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * ** * * ** **
2369 ACCATCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
189 ACCATCGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGTGC-T
2433 GG-T
251 GGAT
* ** * * *
2436 CGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGCGTAC
1 -GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCAC
** *
2498 CATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTG
63 CATCGGC-ACCTAGGCCCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGCAACCTAAGCCCTTG
* * *
2562 GTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGACAC
126 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* *
2627 CATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGTGCTATGA
191 CATCGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGA
2692 T
254 T
* ** *
2693 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* ** * * * *
2758 CGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGT
66 CGGCACCTAGGCCCTTGGATGTGCGAGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGT
* * *
2823 GCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
131 GCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* *
2888 GCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGAT
196 GC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGAT
* *
2949 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* * **
3014 CGACACCTTGGTGCTTGGATGTGCCG-GAACCTCGGGCACCATCGGCAACCT-AGACCCTTGGTC
66 CGGCACCTAGGCCCTTGGATGTG-CGAGAACCTCGGGCACCATCGGCAACCTAAG-CCCTTGGTC
* * *
3077 GTGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-
129 GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
3138 C--C-A-TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
194 CGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGT-GCT-GGAT
3197 GTGCGGGAGCC
1 GTGCGGGAGCC
3208 GATCGGCACC
Statistics
Matches: 670, Mismatches: 81, Indels: 47
0.84 0.10 0.06
Matches are distributed among these distances:
247 43 0.06
248 19 0.03
250 1 0.00
252 1 0.00
253 4 0.01
254 5 0.01
255 92 0.14
256 436 0.65
257 69 0.10
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (254 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
CGGCACCTAGGCCCTTGGATGTGCGAGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGT
GCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
GCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGAT
Found at i:2777 original size:299 final size:299
Alignment explanation
Indices: 2240--2975 Score: 1201
Period size: 299 Copynumber: 2.5 Consensus size: 299
2230 GAGCCCCGGA
** * * ** * **
2240 CACCATCGGCAAACTAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
2304 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
*
2368 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
* *
2433 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCAC
*
2498 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
2538 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
2603 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
2668 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
2733 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
2798 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
2837 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
2902 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
2965 CACCATCGGCA
130 CACCATCGGCA
2976 AACTAGGCCC
Statistics
Matches: 408, Mismatches: 27, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
298 85 0.21
299 323 0.79
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:3152 original size:34 final size:34
Alignment explanation
Indices: 3109--3187 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
3099 CGGTAAAATA
*
3109 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
3143 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
3177 GGCACCTTGGT
1 GGC-CCTTGGT
3188 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:3213 original size:35 final size:35
Alignment explanation
Indices: 3174--3242 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
3164 CTCGGGCACC
* * *
3174 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCG
1 ATCGGCACCTCGGTGGCTAGGAGGTGCGGGAGCCG
3209 ATCGGCACCTCGGTGGCTAGGAGGTGCGGGAGCC
1 ATCGGCACCTCGGTGGCTAGGAGGTGCGGGAGCC
3243 TCGGACACCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.13, C:0.26, G:0.43, T:0.17
Consensus pattern (35 bp):
ATCGGCACCTCGGTGGCTAGGAGGTGCGGGAGCCG
Found at i:11327 original size:42 final size:42
Alignment explanation
Indices: 11223--11514 Score: 319
Period size: 42 Copynumber: 6.9 Consensus size: 42
11213 GAGCCTCCAT
*
11223 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
11266 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
11309 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
11351 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
11393 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
11435 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
11477 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
11515 AAGCTAAAGT
Statistics
Matches: 211, Mismatches: 26, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
41 16 0.08
42 141 0.67
43 43 0.20
44 11 0.05
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:11751 original size:24 final size:24
Alignment explanation
Indices: 11724--11802 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
11714 CCGGTTAGGT
*
11724 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
11748 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
11772 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
11796 TTCCGGT
1 TCCCGGT
11803 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:12004 original size:43 final size:43
Alignment explanation
Indices: 11807--12818 Score: 1003
Period size: 43 Copynumber: 23.9 Consensus size: 43
11797 TCCGGTAGCA
11807 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
11850 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
11892 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
11933 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
11976 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
12018 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
12061 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
12103 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
12146 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
12189 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
12232 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
12275 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
12317 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
12360 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
12402 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
12445 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
12488 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
12531 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
12573 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
12616 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
12658 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
12701 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
12744 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC--CC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
12785 T------TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
12819 CCTTGGTGGC
Statistics
Matches: 790, Mismatches: 153, Indels: 59
0.79 0.15 0.06
Matches are distributed among these distances:
35 30 0.04
41 11 0.01
42 275 0.35
43 474 0.60
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:12033 original size:85 final size:86
Alignment explanation
Indices: 11807--12818 Score: 1003
Period size: 85 Copynumber: 12.0 Consensus size: 86
11797 TCCGGTAGCA
** * *
11807 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
11870 GCCCCGGACACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* ** * * ** *
11892 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGA
11954 GCCTCGGGCACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
11976 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* **
12039 GCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
12061 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
12124 ACCTCGCGTACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * * *
12146 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
12211 CCTCGGCCACCATCGGCAAAA
66 CCTCGGGCACCATCGGCAACC
* *
12232 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
12297 CCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGCAACC
* ** * * * **
12317 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
12381 GCCTCGAGCACCATCGGC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * * * *
12402 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
12466 GGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* **
12488 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
12553 CCTCGGCCACCATCGGC-TCC
66 CCTCGGGCACCATCGGCAACC
** * * *
12573 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
12637 GCCTCGAGCACCATCGAC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * *
12658 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * **
12722 GGCTCGGGCACCATCGGTAAAA
65 GCCTCGGGCACCATCGGCAACC
* *
12744 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC--CCT------TTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
12801 CCTCGGGCACCATCGGCA
66 CCTCGGGCACCATCGGCA
12819 CCTTGGTGGC
Statistics
Matches: 788, Mismatches: 125, Indels: 35
0.83 0.13 0.04
Matches are distributed among these distances:
78 30 0.04
83 4 0.01
84 74 0.09
85 466 0.59
86 214 0.27
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (86 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAACC
Found at i:12340 original size:256 final size:253
Alignment explanation
Indices: 11822--12849 Score: 1045
Period size: 256 Copynumber: 4.1 Consensus size: 253
11812 CCTTGGTCGT
* ** * *
11822 GCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGC-AGGAGCCCCG-GACACCA
1 GCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGA-GAGCCTCGAG-CACCA
* * * * ** ** *
11883 TCGGCAAACTAAGCCCTTGGTAT-TGCGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT
63 TCGGC-ACCTAGGCCCTTGG-ATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTT-GGT
* ** *
11946 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCA
125 CGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * ** * * ** **
12010 TCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
190 TCGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGTGC-TGGAT
*
12073 CGT
252 -GG
* ** * * *
12076 GCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCAT
1 GCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCACCAT
** *
12138 CGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTC
64 CGGC-ACCTAGGCCCTTGGAT-GTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTC
* * *
12202 GTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
126 GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
12267 CGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGTGCTATGATGG
191 CGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGATGG
** *
12332 GCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
1 GCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCG
* ** * * * *
12397 GCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGC
66 GCACCTAGGCCCTTGGATGTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTGC
* * *
12462 GAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
130 GAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* * *
12527 AAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGATGT
195 -AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGATGG
* *
12588 GCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
1 GCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCG
* * **
12653 ACACCTTGGTGCTTGGATGTGCCGGAACCTCGGGCACCATCGGCAACCT-AGACCCTTGGTCGTG
66 GCACCTAGGCCCTTGGATGTG-CGGAACCTCGGGCACCATCGGCAACCTAAG-CCCTTGGTCGTG
* * * *
12717 CGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGG
129 CGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * *
12782 ---C----CCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGG
194 CAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGT-GCT-GGATGG
12837 GCGGGAGCCTCGG
1 GCGGGAGCCTCGG
12850 GGGCTAGGAG
Statistics
Matches: 670, Mismatches: 84, Indels: 45
0.84 0.11 0.06
Matches are distributed among these distances:
248 39 0.06
249 21 0.03
252 1 0.00
253 5 0.01
254 67 0.10
255 24 0.04
256 444 0.66
257 69 0.10
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (253 bp):
GCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCG
GCACCTAGGCCCTTGGATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTGCG
AGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
ACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGATGG
Found at i:12637 original size:299 final size:299
Alignment explanation
Indices: 11878--12818 Score: 1209
Period size: 299 Copynumber: 3.2 Consensus size: 299
11868 GAGCCCCGGA
** * ** * **
11878 CACCATCGGCAAACTAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
11941 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
12005 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
*
12070 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCAC
12135 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
12175 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
12240 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
12305 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
12370 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
*
12435 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
12474 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
12539 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * ** * ** * * **
12602 CACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTG
130 CACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTGTCGGCAACCTAGGCC
* * * * *** **
12664 CTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-TCGTGCGAGAGGCTC
192 CTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC
* * ** * *
12727 GGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCG-GGGGCCTCGGC
254 GCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG-CTCGGG
*
12773 CACCATCGG----C----CCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
12819 CCTTGGTGGC
Statistics
Matches: 577, Mismatches: 56, Indels: 28
0.87 0.08 0.04
Matches are distributed among these distances:
291 35 0.06
295 1 0.00
297 29 0.05
298 98 0.17
299 414 0.72
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:12825 original size:35 final size:34
Alignment explanation
Indices: 12746--12825 Score: 124
Period size: 35 Copynumber: 2.3 Consensus size: 34
12736 CGGTAAAATA
*
12746 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
12780 GGCCCTTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCC-TTGGTCGTGCGGGAGCCTCGGCCACCATC
12815 GGCACCTTGGT
1 GGC-CCTTGGT
12826 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
34 5 0.12
35 35 0.83
36 2 0.05
ACGTcount: A:0.07, C:0.35, G:0.38, T:0.20
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:12880 original size:68 final size:67
Alignment explanation
Indices: 12792--12917 Score: 207
Period size: 68 Copynumber: 1.9 Consensus size: 67
12782 CCCTTTGGTC
* *
12792 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGGGCGGGAGCCTCGGGGGCTAG
1 GTGCGGGAGCCTCGGACACCATCGGCAACTTGGT-GCTCGGATGGGCGGGAGCCTCGGGGGCTAG
12857 GAG
65 GAG
* *
12860 GTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCGGG
1 GTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTCGGATGGGCGGGAGCCTCGGG
12918 CACCCATCGG
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
67 22 0.41
68 32 0.59
ACGTcount: A:0.13, C:0.26, G:0.44, T:0.17
Consensus pattern (67 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTCGGATGGGCGGGAGCCTCGGGGGCTAGG
AG
Found at i:12906 original size:42 final size:44
Alignment explanation
Indices: 12860--12952 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
12850 GGGCTAGGAG
*
12860 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
12902 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
12946 GTGCGGG
1 GTGCGGG
12953 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:20960 original size:42 final size:42
Alignment explanation
Indices: 20856--21147 Score: 319
Period size: 42 Copynumber: 6.9 Consensus size: 42
20846 GAGCCTCCAT
*
20856 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
20899 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
20942 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
20984 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
21026 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
21068 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
21110 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
21148 AAGCTAAAGT
Statistics
Matches: 211, Mismatches: 26, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
41 16 0.08
42 141 0.67
43 43 0.20
44 11 0.05
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:21383 original size:24 final size:24
Alignment explanation
Indices: 21356--21434 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
21346 CCGGTTAGGT
*
21356 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
21380 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
21404 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
21428 TTCCGGT
1 TCCCGGT
21435 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:21636 original size:43 final size:43
Alignment explanation
Indices: 21439--22449 Score: 994
Period size: 43 Copynumber: 23.9 Consensus size: 43
21429 TCCGGTAGCA
21439 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
21482 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
21524 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
21565 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
21608 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
21650 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
21693 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
21735 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
21778 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
21821 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
21864 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
21907 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
21949 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
21992 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
22034 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
22077 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
22120 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
22163 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
22205 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
22248 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
22290 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
22333 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
22376 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
22410 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
22450 CCTTGGTGGC
Statistics
Matches: 786, Mismatches: 150, Indels: 66
0.78 0.15 0.07
Matches are distributed among these distances:
34 24 0.03
35 2 0.00
36 1 0.00
37 3 0.00
38 1 0.00
39 1 0.00
40 4 0.01
41 10 0.01
42 277 0.35
43 463 0.59
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:21665 original size:85 final size:86
Alignment explanation
Indices: 21439--22449 Score: 994
Period size: 85 Copynumber: 12.0 Consensus size: 86
21429 TCCGGTAGCA
** * *
21439 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
21502 GCCCCGGACACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* ** * * ** *
21524 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGA
21586 GCCTCGGGCACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
21608 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* **
21671 GCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
21693 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
21756 ACCTCGCGTACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * * *
21778 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
21843 CCTCGGCCACCATCGGCAAAA
66 CCTCGGGCACCATCGGCAACC
* *
21864 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
21929 CCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGCAACC
* ** * * * **
21949 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
22013 GCCTCGAGCACCATCGGC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * * * *
22034 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
22098 GGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* **
22120 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
22185 CCTCGGCCACCATCGGC-TCC
66 CCTCGGGCACCATCGGCAACC
** * * *
22205 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
22269 GCCTCGAGCACCATCGAC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * *
22290 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * **
22354 GGCTCGGGCACCATCGGTAAAA
65 GCCTCGGGCACCATCGGCAACC
* *
22376 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--TCGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
22432 CCTCGGGCACCATCGGCA
66 CCTCGGGCACCATCGGCA
22450 CCTTGGTGGC
Statistics
Matches: 786, Mismatches: 126, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
77 35 0.04
79 1 0.00
80 1 0.00
82 1 0.00
83 7 0.01
84 71 0.09
85 468 0.60
86 202 0.26
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (86 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAACC
Found at i:21972 original size:256 final size:253
Alignment explanation
Indices: 21452--22480 Score: 1058
Period size: 256 Copynumber: 4.1 Consensus size: 253
21442 GCCCTTGGTC
* ** * *
21452 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGC-AGGAGCCCCG-GACAC
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGA-GAGCCTCGAG-CAC
* * * * ** **
21513 CATCGGCAAACTAAGCCCTTGGTAT-TGCGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCG
63 CATCGGC-ACCTAGGCCCTTGG-ATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTT-G
* * ** *
21576 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGGCAC
125 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * ** * * ** **
21640 CATCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG
190 CATCGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGTGC-TGG
21704 -T
252 AT
* ** * * *
21705 CGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGCGTAC
1 -GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCAC
** *
21767 CATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTG
63 CATCGGC-ACCTAGGCCCTTGGAT-GTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTG
* * *
21831 GTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGACAC
125 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* *
21896 CATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGTGCTATGA
190 CATCGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGA
21961 T
253 T
* ** *
21962 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* ** * * * *
22027 CGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGT
66 CGGCACCTAGGCCCTTGGATGTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGT
* * *
22092 GCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
130 GCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* *
22157 GCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGAT
195 GC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGAT
* *
22218 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* * **
22283 CGACACCTTGGTGCTTGGATGTGCCGGAACCTCGGGCACCATCGGCAACCT-AGACCCTTGGTCG
66 CGGCACCTAGGCCCTTGGATGTG-CGGAACCTCGGGCACCATCGGCAACCTAAG-CCCTTGGTCG
* * *
22347 TGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C
129 TGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
22408 --C-A-TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
194 GGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGT-GCT-GGAT
22466 GTGCGGGAGCCTCGG
1 GTGCGGGAGCCTCGG
22481 TGGTGGCTAG
Statistics
Matches: 674, Mismatches: 81, Indels: 46
0.84 0.10 0.06
Matches are distributed among these distances:
247 43 0.06
248 23 0.03
250 1 0.00
252 2 0.00
253 8 0.01
254 69 0.10
255 26 0.04
256 433 0.64
257 69 0.10
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (253 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
CGGCACCTAGGCCCTTGGATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTG
CGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
CAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGAT
Found at i:22269 original size:299 final size:299
Alignment explanation
Indices: 21510--22449 Score: 1209
Period size: 299 Copynumber: 3.2 Consensus size: 299
21500 GAGCCCCGGA
** * ** * **
21510 CACCATCGGCAAACTAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
21573 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
21637 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
*
21702 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCAC
21767 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
21807 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
21872 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
21937 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
22002 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
*
22067 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
22106 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
22171 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * ** * ** * * **
22234 CACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTG
130 CACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTGTCGGCAACCTAGGCC
* * * * *** **
22296 CTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-TCGTGCGAGAGGCTC
192 CTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC
* * ** * *
22359 GGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCG-GGGGCCTCGGC
254 GCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG-CTCGGG
22405 CACCATC-G--------GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
22450 CCTTGGTGGC
Statistics
Matches: 577, Mismatches: 55, Indels: 29
0.87 0.08 0.04
Matches are distributed among these distances:
290 37 0.06
297 29 0.05
298 99 0.17
299 412 0.71
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:22421 original size:34 final size:34
Alignment explanation
Indices: 22378--22456 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
22368 CGGTAAAATA
*
22378 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
22412 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
22446 GGCACCTTGGT
1 GGC-CCTTGGT
22457 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:22485 original size:28 final size:28
Alignment explanation
Indices: 22453--22508 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
22443 ATCGGCACCT
* *
22453 TGGTGGCTCGGATGTGCGGGAGCCTCGG
1 TGGTGGCTAGGAGGTGCGGGAGCCTCGG
22481 TGGTGGCTAGGAGGTGCGGGAGCCTCGG
1 TGGTGGCTAGGAGGTGCGGGAGCCTCGG
22509 ACACCATCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.09, C:0.20, G:0.52, T:0.20
Consensus pattern (28 bp):
TGGTGGCTAGGAGGTGCGGGAGCCTCGG
Found at i:22541 original size:42 final size:44
Alignment explanation
Indices: 22494--22586 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
22484 TGGCTAGGAG
*
22494 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
22536 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
22580 GTGCGGG
1 GTGCGGG
22587 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:30592 original size:42 final size:42
Alignment explanation
Indices: 30488--30779 Score: 319
Period size: 42 Copynumber: 6.9 Consensus size: 42
30478 GAGCCTCCAT
*
30488 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
30531 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
30574 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
30616 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
30658 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
30700 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
30742 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
30780 AAGCTAAAGT
Statistics
Matches: 211, Mismatches: 26, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
41 16 0.08
42 141 0.67
43 43 0.20
44 11 0.05
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:31015 original size:24 final size:24
Alignment explanation
Indices: 30988--31066 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
30978 CCGGTTAGGT
*
30988 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
31012 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
31036 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
31060 TTCCGGT
1 TCCCGGT
31067 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:31148 original size:42 final size:43
Alignment explanation
Indices: 31084--32109 Score: 781
Period size: 43 Copynumber: 24.3 Consensus size: 43
31074 GCCCTTGGTC
*
31084 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
31126 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * *
31168 ATGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
**
31209 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
31251 CGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* ** **
31294 GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
31336 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
31379 GTGCGAGAACCTCGCGTACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
31421 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* ** **
31464 CGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * **
31507 CGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
31550 CGTGCGGGAGCCTCGGCCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* * ** **
31593 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
31635 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
31678 GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
31720 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
** **
31763 CGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
31806 CGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * **
31849 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
31891 CGTGCGGGAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ***
31934 GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * ** **
31976 CGTGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
32019 CGTGCGGGGGCCTCGGCCACCATCGGC--CCTTGGT-C------
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
32054 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
32097 GTGCGGGAGCCTC
1 GTGCGGGAGCCTC
32110 AGTGGCTAGG
Statistics
Matches: 800, Mismatches: 148, Indels: 71
0.79 0.15 0.07
Matches are distributed among these distances:
34 24 0.03
35 7 0.01
37 1 0.00
40 9 0.01
41 25 0.03
42 251 0.31
43 483 0.60
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
Found at i:31295 original size:85 final size:86
Alignment explanation
Indices: 31071--32080 Score: 994
Period size: 85 Copynumber: 12.0 Consensus size: 86
31061 TCCGGTAGCA
** * *
31071 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
31134 GCCCCGGACACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* * * * ** *
31156 TAAGCCCTTGGT-ATGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGA
31217 GCCTCGGGCACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
31239 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* **
31302 GCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
31324 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
31387 ACCTCGCGTACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * * *
31409 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
31474 CCTCGGCCACCATCGGCAAAA
66 CCTCGGGCACCATCGGCAACC
* *
31495 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
31560 CCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGCAACC
* ** * * * **
31580 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
31644 GCCTCGAGCACCATCGGC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * * * *
31665 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
31729 GGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* **
31751 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
31816 CCTCGGCCACCATCGGC-TCC
66 CCTCGGGCACCATCGGCAACC
** * * *
31836 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
31900 GCCTCGAGCACCATCGAC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * *
31921 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * **
31985 GGCTCGGGCACCATCGGTAAAA
65 GCCTCGGGCACCATCGGCAACC
* *
32007 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--TCGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
32063 CCTCGGGCACCATCGGCA
66 CCTCGGGCACCATCGGCA
32081 CCTTGGTGGC
Statistics
Matches: 786, Mismatches: 124, Indels: 38
0.83 0.13 0.04
Matches are distributed among these distances:
77 35 0.04
79 1 0.00
80 1 0.00
82 5 0.01
83 67 0.09
84 11 0.01
85 464 0.59
86 202 0.26
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (86 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAACC
Found at i:31603 original size:256 final size:253
Alignment explanation
Indices: 31084--32109 Score: 1052
Period size: 256 Copynumber: 4.1 Consensus size: 253
31074 GCCCTTGGTC
* ** * *
31084 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGC-AGGAGCCCCG-GACAC
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGA-GAGCCTCGAG-CAC
* * * * * ** ** *
31145 CATCGGCAAACTAAGCCCTTGG-TATGCGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGA
63 CATCGGC-ACCTAGGCCCTTGGATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTT-GG
* ** *
31208 T-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACC
126 TCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * ** * * ** **
31272 ATCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-
191 ATCGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGTGC-TGGA
31335 T
253 T
* ** * * *
31336 CGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGCGTAC
1 -GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCAC
** *
31398 CATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTG
63 CATCGGC-ACCTAGGCCCTTGGAT-GTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTG
* * *
31462 GTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGACAC
125 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* *
31527 CATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGTGCTATGA
190 CATCGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGA
31592 T
253 T
* ** *
31593 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* ** * * * *
31658 CGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGT
66 CGGCACCTAGGCCCTTGGATGTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGT
* * *
31723 GCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
130 GCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* *
31788 GCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGAT
195 GC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGAT
* *
31849 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* * **
31914 CGACACCTTGGTGCTTGGATGTGCCGGAACCTCGGGCACCATCGGCAACCT-AGACCCTTGGTCG
66 CGGCACCTAGGCCCTTGGATGTG-CGGAACCTCGGGCACCATCGGCAACCTAAG-CCCTTGGTCG
* * *
31978 TGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C
129 TGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
32039 --C-A-TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
194 GGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGT-GCT-GGAT
32097 GTGCGGGAGCCTC
1 GTGCGGGAGCCTC
32110 AGTGGCTAGG
Statistics
Matches: 672, Mismatches: 82, Indels: 43
0.84 0.10 0.05
Matches are distributed among these distances:
247 43 0.06
248 21 0.03
250 1 0.00
252 6 0.01
253 69 0.10
254 6 0.01
255 24 0.04
256 433 0.64
257 69 0.10
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (253 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
CGGCACCTAGGCCCTTGGATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTG
CGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
CAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGAT
Found at i:31900 original size:299 final size:299
Alignment explanation
Indices: 31142--32080 Score: 1209
Period size: 299 Copynumber: 3.2 Consensus size: 299
31132 GAGCCCCGGA
* * ** * **
31142 CACCATCGGCAAACTAAGCCCTTGGT-ATGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
31204 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
31268 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
*
31333 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCAC
31398 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
31438 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
31503 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
31568 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
31633 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
*
31698 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
31737 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
31802 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * ** * ** * * **
31865 CACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTG
130 CACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTGTCGGCAACCTAGGCC
* * * * *** **
31927 CTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-TCGTGCGAGAGGCTC
192 CTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC
* * ** * *
31990 GGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCG-GGGGCCTCGGC
254 GCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG-CTCGGG
32036 CACCATC-G--------GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
32081 CCTTGGTGGC
Statistics
Matches: 577, Mismatches: 54, Indels: 30
0.87 0.08 0.05
Matches are distributed among these distances:
290 37 0.06
296 26 0.05
297 3 0.01
298 99 0.17
299 412 0.71
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:32052 original size:34 final size:34
Alignment explanation
Indices: 32009--32087 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
31999 CGGTAAAATA
*
32009 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
32043 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
32077 GGCACCTTGGT
1 GGC-CCTTGGT
32088 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:32115 original size:25 final size:25
Alignment explanation
Indices: 32086--32134 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
32076 CGGCACCTTG
* *
32086 GTGGCTCGGATGTGCGGGAGCCTCA
1 GTGGCTAGGAGGTGCGGGAGCCTCA
32111 GTGGCTAGGAGGTGCGGGAGCCTC
1 GTGGCTAGGAGGTGCGGGAGCCTC
32135 GGACACCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.22, G:0.47, T:0.18
Consensus pattern (25 bp):
GTGGCTAGGAGGTGCGGGAGCCTCA
Found at i:32168 original size:42 final size:44
Alignment explanation
Indices: 32122--32214 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
32112 TGGCTAGGAG
*
32122 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
32164 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
32208 GTGCGGG
1 GTGCGGG
32215 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:40222 original size:42 final size:42
Alignment explanation
Indices: 40118--40409 Score: 319
Period size: 42 Copynumber: 6.9 Consensus size: 42
40108 GAGCCTCCAT
*
40118 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
40161 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
40204 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
40246 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
40288 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
40330 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
40372 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
40410 AAGCTAAAGT
Statistics
Matches: 211, Mismatches: 26, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
41 16 0.08
42 141 0.67
43 43 0.20
44 11 0.05
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:40645 original size:24 final size:24
Alignment explanation
Indices: 40618--40696 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
40608 CCGGTTAGGT
*
40618 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
40642 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
40666 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
40690 TTCCGGT
1 TCCCGGT
40697 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:40864 original size:86 final size:84
Alignment explanation
Indices: 40701--41676 Score: 719
Period size: 85 Copynumber: 11.5 Consensus size: 84
40691 TCCGGTAGCA
* *
40701 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGATGTGCGGGAG
* *
40765 CCCCGGACACCATCGGCAAAC
64 CCTCGGACACCATCGGCAACC
* * * *
40786 TAAGCCCTTGGT-ATGCTCTGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGATGTGCGGG
1 TAGGCCCTTGGTCGTG--C-GGAGCCTCGGGCACCATCGGCAACCTAGGTGCTT-GATGTGCGGG
*
40849 AGCCTCGGGCACCATCGGCAACC
62 AGCCTCGGACACCATCGGCAACC
*
40872 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGG-AGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGATGTGCGGGAG
**
40936 CCTCGGACACTGTCGGCAACC
64 CCTCGGACACCATCGGCAACC
* * * *
40957 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGATGTGCGAGAA
1 TAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGGTGCTT-GATGTGCGGGAG
*
41021 CCTCGCG-TACCATCGGCAACC
64 CCTCG-GACACCATCGGCAACC
* * * ** *
41042 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGAG
* **
41107 CCTCGGCCACCATCGGCAAAA
64 CCTCGGACACCATCGGCAACC
* * ** *
41128 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGAG
*
41193 CCTCGGCCACCATCGGC-ACC
64 CCTCGGACACCATCGGCAACC
* ** * * * ** ** **
41213 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGCGTGCGGGAG
1 TAGGCCCT-TGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGATGTGCGGGAG
41277 CCTC-GAGCACCATCGGC-ACC
64 CCTCGGA-CACCATCGGCAACC
* ** * * * * ** * *
41297 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCG-GAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGA
* * *
41361 GGCTCGGGCACCATCGGCAAAC
63 GCCTCGGACACCATCGGCAACC
* ** ** *
41383 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGAG
*
41448 CCTCGG-CGACCATC-GC-CCC
64 CCTCGGAC-ACCATCGGCAACC
** * * * ** *
41467 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGA
*
41531 GCCTC-GAGCACCATCGAC-ACC
63 GCCTCGGA-CACCATCGGCAACC
* ** * *** * * *
41552 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCATGCGAGA
1 TAGGCCCTTGG-TCGTG-CGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGA
* * * **
41616 GGCTCGGGCACCATCGGTAAAA
63 GCCTCGGACACCATCGGCAACC
* *
41638 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC
1 TAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGC
41677 CCTTGGTCGT
Statistics
Matches: 750, Mismatches: 107, Indels: 67
0.81 0.12 0.07
Matches are distributed among these distances:
83 5 0.01
84 139 0.19
85 325 0.43
86 277 0.37
87 4 0.01
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGCGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGATGTGCGGGAGCC
TCGGACACCATCGGCAACC
Found at i:40900 original size:43 final size:43
Alignment explanation
Indices: 40701--41711 Score: 946
Period size: 43 Copynumber: 23.9 Consensus size: 43
40691 TCCGGTAGCA
40701 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
40744 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
40786 TAAGCCCTTGGT-ATGCTCTGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTG--CGGGAGCCTCGGGCACCATCGGCAACC
* ** *
40829 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
40872 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
40914 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
40957 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
40999 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
41042 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
41085 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
41128 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
41171 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
41213 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
41256 TAGGCCCTTGG-CGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
41297 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
41340 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
41383 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
41426 TAGGCCCTTGGTCGTGCGGGAGCCTC-GGCGACCATC-GC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGC-ACCATCGGCAACC
** * * *
41467 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
41510 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
41552 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * **
41595 TAGACCCTTGGTCATGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
41638 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
41672 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
41712 CCTTGGTGGC
Statistics
Matches: 779, Mismatches: 153, Indels: 74
0.77 0.15 0.07
Matches are distributed among these distances:
34 24 0.03
35 2 0.00
36 1 0.00
37 3 0.00
38 1 0.00
39 1 0.00
40 4 0.01
41 38 0.05
42 246 0.32
43 436 0.56
44 23 0.03
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:41333 original size:298 final size:298
Alignment explanation
Indices: 40772--41506 Score: 1160
Period size: 298 Copynumber: 2.5 Consensus size: 298
40762 GAGCCCCGGA
* * * ** * **
40772 CACCATCGGCAAACTAAGCCCTTGGT-ATGCTCTGGAGCCTCGGGCGCCATCGGC-ACCTCGGTG
1 CACCATCGGCAAACTAAGCCCTTGGTCGTG--CGGGAGCCTCGGGCACCATCGGCAAAATAGGCC
* *
40835 CTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCG
64 CTT-GGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* *
40899 GGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCC
127 GACACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCC
* *
40964 TTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGT
192 TTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGC
*
41029 ACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
257 ACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
41071 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
41136 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
41201 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
130 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
41266 G-CGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
195 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
41330 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
41369 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* ** *
41434 TGGTCGTGCGGGAGCCTCGGCGACCATC-GC-CCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGC-ACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
41496 CACCATCGGCA
129 CACCATCGGCA
41507 AACTAGGCCC
Statistics
Matches: 406, Mismatches: 24, Indels: 15
0.91 0.05 0.03
Matches are distributed among these distances:
296 35 0.09
297 4 0.01
298 213 0.52
299 152 0.37
300 2 0.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.18
Consensus pattern (298 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACA
CCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG
TCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCA
TCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:41402 original size:255 final size:254
Alignment explanation
Indices: 40714--41741 Score: 1054
Period size: 255 Copynumber: 4.1 Consensus size: 254
40704 GCCCTTGGTC
* ** * * * *
40714 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGATGTGCAGGAGCCCCG-GACACCA
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGACGTGCGGGAGCCTCGAG-CACCA
* ** ** * * * * **
40777 TCGGCAAACTAAGCCCTTGGTATGCTCTG-GAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCG
65 TCGGC-ACCTTGGTGCTTGG-ATG-TCCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTT-G
* * ** *
40840 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGGCAC
126 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * ** * * ** **
40904 CATCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG
191 CATCGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGTGC-TGG
40968 -T
253 AT
* ** * * * * *
40969 CGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTACC
1 -GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGACGTGCGGGAGCCTCGAGCACC
* ** * ** * *
41032 ATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG
64 ATCGGC-ACCTTGGTGCTTGGAT-GTCCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGG
* * *
41096 TCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGACACC
127 TCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
41161 ATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGTGCTATGAT
192 ATCGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGAT
* **
41226 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-CGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGACGTGCGGGAGCCTCGAGCACCAT
* *
41290 CGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGT
66 CGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
41355 GCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
131 GCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* * *
41420 GCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCGACCATC-GCCCCTAGGTGCTGGGAT
196 GC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGAT
* *
41480 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGACGTGCGGGAGCCTCGAGCACCAT
* * *
41545 CGACACCTTGGTGCTTGGATGTGCCG-GAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCA
66 CGGCACCTTGGTGCTTGGATGT-CCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * *
41609 TGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C
130 TGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
41670 --C-A-TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
195 GGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGT-GCT-GGAT
41728 GTGCGGGAGCCTCG
1 GTGCGGGAGCCTCG
41742 TGGCTAGGAG
Statistics
Matches: 666, Mismatches: 88, Indels: 44
0.83 0.11 0.06
Matches are distributed among these distances:
246 33 0.05
247 9 0.01
248 21 0.03
249 1 0.00
251 1 0.00
252 3 0.00
254 56 0.08
255 304 0.46
256 193 0.29
257 45 0.07
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (254 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGACGTGCGGGAGCCTCGAGCACCAT
CGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
GCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
GCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGAT
Found at i:41683 original size:34 final size:34
Alignment explanation
Indices: 41640--41718 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
41630 CGGTAAAATA
*
41640 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
41674 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
41708 GGCACCTTGGT
1 GGC-CCTTGGT
41719 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:41745 original size:24 final size:24
Alignment explanation
Indices: 41717--41765 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
41707 CGGCACCTTG
* *
41717 GTGGCTCGGATGTGCGGGAGCCTC
1 GTGGCTAGGAGGTGCGGGAGCCTC
41741 GTGGCTAGGAGGTGCGGGAGCCTC
1 GTGGCTAGGAGGTGCGGGAGCCTC
41765 G
1 G
41766 GACACCATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.10, C:0.22, G:0.49, T:0.18
Consensus pattern (24 bp):
GTGGCTAGGAGGTGCGGGAGCCTC
Found at i:41799 original size:42 final size:44
Alignment explanation
Indices: 41752--41844 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
41742 TGGCTAGGAG
*
41752 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
41794 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
41838 GTGCGGG
1 GTGCGGG
41845 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:49870 original size:42 final size:42
Alignment explanation
Indices: 49766--50057 Score: 319
Period size: 42 Copynumber: 6.9 Consensus size: 42
49756 GAGCCTCCAT
*
49766 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
49809 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
49852 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
49894 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
49936 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
49978 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
50020 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
50058 AAGCTAAAGT
Statistics
Matches: 211, Mismatches: 26, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
41 16 0.08
42 141 0.67
43 43 0.20
44 11 0.05
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:50293 original size:24 final size:24
Alignment explanation
Indices: 50265--50343 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
50255 CCGGTTAGGT
*
50265 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
50289 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
50313 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
50337 TTCCGGT
1 TCCCGGT
50344 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:50469 original size:43 final size:43
Alignment explanation
Indices: 50348--51358 Score: 976
Period size: 43 Copynumber: 23.9 Consensus size: 43
50338 TCCGGTAGCA
50348 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
50391 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
50433 TAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
50475 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
50518 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
50560 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
50603 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
50645 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
50688 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
50731 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
50774 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
50817 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
50859 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
50902 TAGGCCCTTGG-CGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
50943 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
50986 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
51029 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
51072 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATTGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
51114 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
51157 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
51199 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * **
51242 TAGACCCTTGGTCATGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
51285 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
51319 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
51359 CCTTGGTGGC
Statistics
Matches: 781, Mismatches: 155, Indels: 66
0.78 0.15 0.07
Matches are distributed among these distances:
34 24 0.03
35 2 0.00
36 1 0.00
37 3 0.00
38 1 0.00
39 1 0.00
40 4 0.01
41 11 0.01
42 276 0.35
43 458 0.59
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:50497 original size:85 final size:84
Alignment explanation
Indices: 50348--51358 Score: 719
Period size: 85 Copynumber: 12.0 Consensus size: 84
50338 TCCGGTAGCA
* *
50348 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCT-TGATGTGCGGGAG
* *
50412 CCCCGGACACCATCGGCAAAC
64 CCTCGGACACCATCGGCAACC
* ** *
50433 TAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGC
*
50498 CTCGGGCACCATCGGCAACC
65 CTCGGACACCATCGGCAACC
*
50518 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGATGTGCGGGAGC
**
50583 CTCGGACACTGTCGGCAACC
65 CTCGGACACCATCGGCAACC
* * * *
50603 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGC
*
50668 CTCGCG-TACCATCGGCAACC
65 CTCG-GACACCATCGGCAACC
* * * ** ** *
50688 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
* **
50753 CCTCGGCCACCATCGGCAAAA
64 CCTCGGACACCATCGGCAACC
* * * ** *
50774 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
*
50839 CCTCGGCCACCATCGGC-ACC
64 CCTCGGACACCATCGGCAACC
* ** * * * ** * ** **
50859 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGCGTGCGGGAG
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGATGTGCGGGAG
50923 CCTC-GAGCACCATCGGC-ACC
64 CCTCGGA-CACCATCGGCAACC
* ** * * * * * * ** * *
50943 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
* * *
51007 GGCTCGGGCACCATCGGCAAAC
63 GCCTCGGACACCATCGGCAACC
* ** * ** *
51029 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
* * *
51094 CCTCGGCCACCATTGGC-TCC
64 CCTCGGACACCATCGGCAACC
** * * * * ** *
51114 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
*
51178 GCCTC-GAGCACCATCGAC-ACC
63 GCCTCGGA-CACCATCGGCAACC
* ** * * * *** * * *
51199 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCATGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
* * * **
51263 GGCTCGGGCACCATCGGTAAAA
63 GCCTCGGACACCATCGGCAACC
* * *
51285 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-CCTTGGT-C-----GTGCGGGAGCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGCC
*
51343 TCGGGCACCATCGGCA
66 TCGGACACCATCGGCA
51359 CCTTGGTGGC
Statistics
Matches: 779, Mismatches: 127, Indels: 48
0.82 0.13 0.05
Matches are distributed among these distances:
77 23 0.03
83 4 0.01
84 76 0.10
85 462 0.59
86 214 0.27
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGCC
TCGGACACCATCGGCAACC
Found at i:50640 original size:170 final size:170
Alignment explanation
Indices: 50348--51323 Score: 893
Period size: 170 Copynumber: 5.7 Consensus size: 170
50338 TCCGGTAGCA
** * *
50348 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGATGTGCGGGAG
* * ** *
50412 CCCCGGACACCATCGGCAAACTAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGC-ACCT
65 CCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCT
* ** *
50476 CGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
129 AGGCCCTT-GATCGTGCGAGAGCCTCGGGCACCATCGGCAACC
* * **
50518 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGATGTGCGGGAG
** *
50582 CCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCT
65 CCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCAACCT
* ** * * *
50646 TGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
129 AGGCCCTT-GATCGTGCGAGAGCCTCGGGCACCATCGGCAACC
* * * * *
50688 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGAT-GTGCGGGAG
* * *
50753 CCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACT
65 CCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCT
* * *
50818 AGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
129 AGGCCCTTGATCGTGCGAGAGCCTCGGGCACCATCGGCAACC
* ** * * * ** **
50859 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGCGTGCGGGAG
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATGTGCGGGAG
* * ** * * * *
50923 CCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAAC
65 CCTCGGA-CACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCG-GCACCATCGGCAAC
* * *
50985 CTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
127 CTAGGCCCTTGATCGTGCGAGAGCCTCGGGCACCATCGGCAACC
* ** *
51029 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGAT-GTGCGGGAG
* * ** ** * *
51094 CCTCGGCCACCATTGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
65 CCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGCAACC
* * * *
51157 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
128 TAGGCCCTTGATCGTGCGAGAGCCTCGGGCACCATCGGCAACC
* ** * * * * * *
51199 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCATGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGAT-GTGCGGGA
* * * * *
51263 GGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC
64 GCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGC
51324 CCTTGGTCGT
Statistics
Matches: 668, Mismatches: 119, Indels: 37
0.81 0.14 0.04
Matches are distributed among these distances:
169 77 0.12
170 321 0.48
171 237 0.35
172 33 0.05
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (170 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATGTGCGGGAGC
CTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAG
GCCCTTGATCGTGCGAGAGCCTCGGGCACCATCGGCAACC
Found at i:51147 original size:128 final size:128
Alignment explanation
Indices: 50348--51358 Score: 968
Period size: 128 Copynumber: 8.0 Consensus size: 128
50338 TCCGGTAGCA
* ** * *
50348 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * * ** *
50411 GCCCCGGACACCATCGGCAAACTAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGC-ACC
65 GCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * *
50475 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTA
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* ** * * **
50539 GCCTCGGGCACCATCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * ** *
50603 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * * * *
50666 ACCTCGCGTACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
50731 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
* * *
50796 CCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * ** *
50859 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-CGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * ** * * * * *
50922 GCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
65 GCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
50986 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
** * * *
51051 CCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATTGGC-TCC
66 CCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * *
51114 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * ** * *
51178 GCCTCGAGCACCATCGACACCTTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
65 GCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * * *
51242 TAGACCCTTGGTCATGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
*
51307 CCTC-GG--CCA-C--CA--TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
66 CCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
51359 CCTTGGTGGC
Statistics
Matches: 713, Mismatches: 148, Indels: 53
0.78 0.16 0.06
Matches are distributed among these distances:
119 1 0.00
120 33 0.05
122 2 0.00
124 1 0.00
125 3 0.00
126 33 0.05
127 202 0.28
128 337 0.47
129 101 0.14
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (128 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:51183 original size:298 final size:299
Alignment explanation
Indices: 50419--51153 Score: 1192
Period size: 298 Copynumber: 2.5 Consensus size: 299
50409 GAGCCCCGGA
** * ** * **
50419 CACCATCGGCAAACTAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
50483 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
50547 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
* *
50612 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCAC
*
50677 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
50717 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
50782 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
50847 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
50912 G-CGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
50976 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
51015 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * ** *
51080 TGGTCGTGCGGGAGCCTCGGCCACCATTGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
51143 CACCATCGGCA
130 CACCATCGGCA
51154 AACTAGGCCC
Statistics
Matches: 407, Mismatches: 27, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
297 35 0.09
298 244 0.60
299 128 0.31
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:51330 original size:34 final size:34
Alignment explanation
Indices: 51287--51365 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
51277 CGGTAAAATA
*
51287 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
51321 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
51355 GGCACCTTGGT
1 GGC-CCTTGGT
51366 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:51393 original size:25 final size:25
Alignment explanation
Indices: 51364--51412 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
51354 CGGCACCTTG
* *
51364 GTGGCTCGGATGTGCGGGAGCCTCA
1 GTGGCTAGGAGGTGCGGGAGCCTCA
51389 GTGGCTAGGAGGTGCGGGAGCCTC
1 GTGGCTAGGAGGTGCGGGAGCCTC
51413 GGACACCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.22, G:0.47, T:0.18
Consensus pattern (25 bp):
GTGGCTAGGAGGTGCGGGAGCCTCA
Found at i:51446 original size:42 final size:44
Alignment explanation
Indices: 51400--51492 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
51390 TGGCTAGGAG
*
51400 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
51442 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
51486 GTGCGGG
1 GTGCGGG
51493 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:60488 original size:45 final size:44
Alignment explanation
Indices: 60427--60591 Score: 138
Period size: 45 Copynumber: 3.6 Consensus size: 44
60417 GCTGTCGATG
60427 TGCGGGAGCCTCGGGCACCATCGGCAACTCTAGGCCCTTGGTCGT
1 TGCGGGAGCCTCGGGCACCATCGGCAAC-CTAGGCCCTTGGTCGT
* * ** *
60472 TGCGGTAGCCTCGGGCACCACTCCGGCACACGCTCGCGTGCTATGAT-G-
1 TGCGGGAGCCTCGGGCACCA-T-CGGCA-AC-CTAG-GCCCT-TGGTCGT
* **
60520 TGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGT
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
60564 ATGCGGGCGAG-CTCGAGCACCATCGGCA
1 -TGC-GG-GAGCCTCGGGCACCATCGGCA
60592 CTTGGTTGCT
Statistics
Matches: 92, Mismatches: 18, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 3 0.03
45 24 0.26
46 21 0.23
47 9 0.10
48 21 0.23
49 4 0.04
50 3 0.03
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.18
Consensus pattern (44 bp):
TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
Done.