Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1544
Parameters: 2 7 7 80 10 50 1000
Length:  34733

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
867--897
14
2.1
15
94
5
55
48
0
25
25
1.52
2877--3134
140
1.8
140
81
6
317
24
22
15
38
1.92
5922--6027
52
2.0
53
83
5
135
34
17
11
35
1.86
6966--6999
16
2.1
16
88
0
50
50
14
17
17
1.79
9788--9828
21
2.0
21
90
0
64
29
21
29
19
1.98
11730--11763
16
2.1
16
88
0
50
50
14
17
17
1.79
14659--14702
20
2.3
18
88
7
61
63
0
2
34
1.07
17391--17542
27
5.6
27
93
3
241
26
13
28
30
1.94
17391--17542
55
2.8
55
94
0
259
26
13
28
30
1.94
23212--23258
16
2.9
16
81
12
60
55
10
6
27
1.58
23223--23306
40
2.0
42
84
8
111
41
7
7
44
1.59
23329--23364
17
2.2
17
90
5
56
47
8
8
36
1.64
23607--23653
16
2.8
17
83
6
69
48
10
12
27
1.74
23651--23681
16
1.9
16
100
0
62
35
12
6
45
1.68
23653--23737
31
2.7
32
78
10
93
34
11
12
41
1.80
23412--23728
17
18.8
17
65
17
67
41
11
13
33
1.80
24251--24281
14
2.2
14
94
0
53
0
19
3
77
0.90
24406--24497
10
9.0
10
68
22
50
1
25
0
73
0.89
24386--24473
30
3.2
28
77
15
76
3
20
0
76
0.93
24397--24493
37
2.6
35
74
19
90
2
22
0
75
0.91
24407--24488
10
7.5
11
73
17
64
1
24
0
74
0.89
24394--24505
43
2.6
44
82
13
126
1
23
0
75
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24403--24505
23
4.9
21
74
16
88
0
25
0
73
0.89
25042--25143
30
3.4
30
83
2
125
46
3
20
29
1.69
25416--25637
54
4.0
55
91
4
360
37
17
15
29
1.91
25416--25637
111
2.0
110
91
5
360
37
17
15
29
1.91
25582--26322
72
10.4
72
88
4
1051
34
19
15
30
1.93
25582--26322
284
2.6
286
89
5
1153
34
19
15
30
1.93

Tables:   1

The End!