Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3378
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56022
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:13050 original size:18 final size:18
Alignment explanation
Indices: 13015--13050 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
13005 CTCTTGACAA
*
13015 GCAAAACAAGTTAAATTC
1 GCAAAACAAGTCAAATTC
*
13033 GCAAAACAAGTCATATTC
1 GCAAAACAAGTCAAATTC
13051 TGATTATAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.19, G:0.11, T:0.22
Consensus pattern (18 bp):
GCAAAACAAGTCAAATTC
Found at i:13067 original size:17 final size:17
Alignment explanation
Indices: 13041--13075 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
13031 TCGCAAAACA
*
13041 AGTCATATTCTGATTAT
1 AGTCAGATTCTGATTAT
13058 AGTCAGATTCTGATTAT
1 AGTCAGATTCTGATTAT
13075 A
1 A
13076 CGACTCGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.43
Consensus pattern (17 bp):
AGTCAGATTCTGATTAT
Found at i:32373 original size:75 final size:75
Alignment explanation
Indices: 32250--32401 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
32240 AGGAGATAAA
32250 GACATTCATTTATCAAATATTTTTAAATAAAAAAGAATTGGCATCATGGAGCTTGAATTTTACAT
1 GACATTCATTTATCAAATATTTTTAAATAAAAAAGAATTGGCATCATGGAGCTTGAATTTTACAT
32315 AATTCTTTCT
66 AATTCTTTCT
32325 GACATTCATTTATCAAATATTTTTAAATAAAAAAGAATTGGCATCATGGAGCTTGAATTTTACAT
1 GACATTCATTTATCAAATATTTTTAAATAAAAAAGAATTGGCATCATGGAGCTTGAATTTTACAT
32390 AATTCTTTCT
66 AATTCTTTCT
32400 GA
1 GA
32402 GTTATGTAAA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (75 bp):
GACATTCATTTATCAAATATTTTTAAATAAAAAAGAATTGGCATCATGGAGCTTGAATTTTACAT
AATTCTTTCT
Found at i:39364 original size:37 final size:37
Alignment explanation
Indices: 39313--39497 Score: 325
Period size: 37 Copynumber: 5.0 Consensus size: 37
39303 TAGCTAGGCT
****
39313 ACCACTTATCACTTTACCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
39350 GCCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
39387 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
39424 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
39461 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
39498 GCTAAAACTA
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 142 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:44720 original size:37 final size:37
Alignment explanation
Indices: 44659--44804 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
44649 TACGTATGAT
* *
44659 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
44694 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
44731 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
**
44768 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
44805 TAAAGCTATC
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 91 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:44819 original size:46 final size:46
Alignment explanation
Indices: 44768--45133 Score: 453
Period size: 46 Copynumber: 7.6 Consensus size: 46
44758 TAAGTGTAGC
**
44768 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
44814 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
44860 CACTTATCACTTTTCACTTTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC--TT---TGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
44911 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
44963 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
45009 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
45055 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
45107 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
45134 AGTACTCAAA
Statistics
Matches: 285, Mismatches: 20, Indels: 30
0.85 0.06 0.09
Matches are distributed among these distances:
46 154 0.54
48 3 0.01
50 2 0.01
51 44 0.15
52 81 0.28
55 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:45008 original size:195 final size:196
Alignment explanation
Indices: 44768--45119 Score: 607
Period size: 195 Copynumber: 1.8 Consensus size: 196
44758 TAAGTGTAGC
* * * *
44768 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
*
44833 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTT-TCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
* *
44897 GTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
131 GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
44962 T
196 T
*
44963 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
*
45028 TGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
*
45093 GTAGCTAAAGCTACCACTTATCACTTT
131 GTAGCCAAAGCTACCACTTATCACTTT
45120 ATCACTTGAT
Statistics
Matches: 146, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
195 104 0.71
196 42 0.29
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (196 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
T
Found at i:45104 original size:144 final size:147
Alignment explanation
Indices: 44779--45133 Score: 617
Period size: 144 Copynumber: 2.4 Consensus size: 147
44769 ACTTATCACT
*
44779 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
*
44844 GTATAGCCGAAGCTATCACTTATCACTTTTCACTTTCACTTGATCAGATAAGTGTAGCCGAAGCT
66 GTATAGCCGAAGCTATCACTTATCACTTTTCA--TTCACTTGATCAGATAAGTATAGCCGAAGCT
44909 ATCACTTATCACTTTCCAC
129 ATCACTTATCACTTTCCAC
*
44928 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
44993 GTATAGCCGAAGCTATCACTTATCAC-TTT-A-TCACTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTATAGCCGAAGCTATCACTTATCACTTTTCATTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
45055 TACTTATCACTTTCCAC
131 CACTTATCACTTTCCAC
* *
45072 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTTGATCAGA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGA
45134 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 7, Indels: 5
0.94 0.03 0.02
Matches are distributed among these distances:
144 106 0.53
147 1 0.01
148 3 0.02
149 89 0.45
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (147 bp):
TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
GTATAGCCGAAGCTATCACTTATCACTTTTCATTCACTTGATCAGATAAGTATAGCCGAAGCTAT
CACTTATCACTTTCCAC
Found at i:45122 original size:98 final size:97
Alignment explanation
Indices: 44768--45133 Score: 501
Period size: 98 Copynumber: 3.7 Consensus size: 97
44758 TAAGTGTAGC
* * *
44768 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
44833 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
44867 CACTTTTCACTT-TCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
44931 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
59 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
44970 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
*
45030 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
45062 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
45127 GATCAGA
65 GATCAGA
45134 AGTACTCAAA
Statistics
Matches: 239, Mismatches: 14, Indels: 29
0.85 0.05 0.10
Matches are distributed among these distances:
92 39 0.16
94 1 0.00
96 1 0.00
97 45 0.19
98 104 0.44
99 7 0.03
100 3 0.01
103 39 0.16
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:48298 original size:49 final size:49
Alignment explanation
Indices: 48243--48437 Score: 309
Period size: 49 Copynumber: 4.0 Consensus size: 49
48233 TTCGTTTTCT
* * *
48243 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
* * *
48292 CGATGCCATAGCCCAGCTATGGTCTTACACGAAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
* *
48341 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
48390 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACA-AATCACAT
48438 GTTCACATGT
Statistics
Matches: 137, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
49 131 0.96
50 6 0.04
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (49 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
Found at i:49751 original size:37 final size:37
Alignment explanation
Indices: 49690--49835 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
49680 TACGTATGAT
* *
49690 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
49725 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
49762 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
49799 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
49836 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:49852 original size:46 final size:46
Alignment explanation
Indices: 49799--50163 Score: 451
Period size: 46 Copynumber: 7.6 Consensus size: 46
49789 TAAGTGTAGC
* **
49799 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
49845 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
49891 CACTTATCACTTTTCACTTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC-TTT---GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
49941 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
49993 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
50039 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
50085 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
50137 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
50164 AGTACTCAAA
Statistics
Matches: 285, Mismatches: 19, Indels: 30
0.85 0.06 0.09
Matches are distributed among these distances:
46 155 0.54
47 3 0.01
48 1 0.00
50 42 0.15
51 2 0.01
52 80 0.28
55 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:50134 original size:144 final size:147
Alignment explanation
Indices: 49810--50163 Score: 615
Period size: 144 Copynumber: 2.4 Consensus size: 147
49800 ACTTATCACT
* *
49810 TTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
*
49875 GTATAGCCGAAGCTATCACTTATCACTTTTCACTTCACTTGATCAGATAAGTGTAGCCGAAGCTA
66 GTATAGCCGAAGCTATCACTTATCACTTTTCAC-TCACTTGATCAGATAAGTATAGCCGAAGCTA
49940 TCACTTATCACTTTCCAC
130 TCACTTATCACTTTCCAC
*
49958 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
50023 GTATAGCCGAAGCTATCACTTATCAC-TTT-A-TCACTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTATAGCCGAAGCTATCACTTATCACTTTTCACTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
50085 TACTTATCACTTTCCAC
131 CACTTATCACTTTCCAC
* *
50102 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTTGATCAGA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGA
50164 AGTACTCAAA
Statistics
Matches: 198, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
144 106 0.54
146 1 0.01
147 3 0.02
148 88 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (147 bp):
TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
GTATAGCCGAAGCTATCACTTATCACTTTTCACTCACTTGATCAGATAAGTATAGCCGAAGCTAT
CACTTATCACTTTCCAC
Found at i:50152 original size:98 final size:97
Alignment explanation
Indices: 49799--50163 Score: 483
Period size: 98 Copynumber: 3.7 Consensus size: 97
49789 TAAGTGTAGC
* * * *
49799 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
49864 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
49898 CACTTTTCAC-T-TCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
49961 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
59 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
50000 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
*
50060 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
50092 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
50157 GATCAGA
65 GATCAGA
50164 AGTACTCAAA
Statistics
Matches: 236, Mismatches: 15, Indels: 31
0.84 0.05 0.11
Matches are distributed among these distances:
92 39 0.17
94 1 0.00
96 43 0.18
97 2 0.01
98 102 0.43
99 8 0.03
100 2 0.01
102 39 0.17
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Done.