genome.fa.s2657.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2292
Parameters: 2 7 7 80 10 50 1000
Length:  48291

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1312--1560	50	4.8	50	85	4	284	20	29	24	26	1.99
1311--1560	100	2.4	104	88	6	357	20	29	24	26	1.99
1655--1686	13	2.5	13	94	0	55	56	12	0	31	1.37
1898--1955	30	1.9	30	89	0	89	31	24	3	41	1.71
8879--9127	50	4.8	50	85	4	284	20	29	24	26	1.99
8878--9127	100	2.4	104	88	6	357	20	29	24	26	1.99
9222--9253	13	2.5	13	94	0	55	56	12	0	31	1.37
9465--9522	30	1.9	30	89	0	89	31	24	3	41	1.71
11360--11393	6	5.8	6	93	6	61	0	14	0	85	0.60
16386--16460	19	3.8	19	87	6	105	37	16	9	37	1.80
16397--16459	21	3.1	21	90	9	112	38	14	9	38	1.78
16389--16470	19	4.3	18	86	8	67	39	15	9	35	1.81
16531--16565	16	2.1	17	89	5	54	40	22	0	37	1.55
19354--19472	19	6.3	19	69	13	75	27	3	0	68	1.11
19412--19472	8	7.0	8	77	15	50	26	1	0	72	0.94
19396--19453	26	2.2	26	81	12	64	36	0	0	63	0.94
19435--19472	18	2.1	19	85	9	53	18	2	0	78	0.86
19964--20221	86	3.0	86	91	1	392	36	7	18	37	1.80
21375--21428	20	2.7	20	82	0	63	46	14	7	31	1.73
21370--21453	40	2.1	40	84	4	107	45	13	9	32	1.75
24359--24432	39	1.9	38	86	8	105	36	4	0	59	1.16
26738--26774	16	2.2	16	90	4	56	75	5	0	18	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29116--29154	18	2.2	18	85	0	51	23	15	12	48	1.79
38920--38949	11	2.7	11	89	0	51	43	16	13	26	1.85
43071--43256	40	4.7	40	88	5	243	26	27	22	24	2.00

Tables:   1

The End!