Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2851
Parameters: 2 7 7 80 10 50 1000
Length:  43968

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5414--5664
40
6.7
40
80
16
245
26
21
27
25
1.99
5600--5683
40
2.1
40
82
4
98
23
22
29
23
1.99
13983--14157
46
3.8
46
77
15
200
20
20
29
29
1.97
13980--14150
92
1.8
93
93
3
301
21
20
29
28
1.98
19289--19599
46
6.7
46
73
17
189
27
19
29
23
1.98
19430--19634
92
2.2
93
83
7
233
25
18
30
25
1.98
19288--19642
138
2.6
137
82
6
387
26
19
30
23
1.98
19474--19647
94
1.9
94
85
5
248
25
20
30
23
1.98
19479--19674
94
2.1
94
80
9
213
28
20
29
21
1.98
24250--24343
25
3.5
25
74
16
89
48
15
18
17
1.81
24250--24315
31
2.1
31
94
0
114
48
13
21
16
1.80
24250--24297
6
7.8
6
77
13
53
50
14
18
16
1.79
24465--24545
27
3.0
27
82
8
85
37
19
23
19
1.95
24586--24636
20
2.5
20
90
3
84
37
35
19
7
1.81
24632--24690
22
2.7
22
86
0
82
37
23
23
15
1.93
25196--25412
54
4.1
54
72
10
144
25
21
22
29
1.99
25226--25436
27
8.0
27
79
7
191
25
21
21
31
1.98
31909--31960
24
2.2
24
89
0
77
55
9
1
32
1.43
33879--33930
24
2.2
24
89
0
77
55
9
1
32
1.43
34168--34370
40
5.1
40
86
3
268
24
27
23
24
2.00
38797--38822
13
2.0
13
100
0
52
53
15
0
30
1.42
41949--42021
35
2.1
35
92
0
119
24
5
35
34
1.79

Tables:   1

The End!