Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2435

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13713
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32


Found at i:6316 original size:30 final size:30

Alignment explanation


    Indices: 6280--6339  Score: 93
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       6270 ATTCCGAGCC

                       *                  
       6280 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
          1 TAGGGGCAAAAATGTAATTATGCAAAAGTT

                               *   *      
       6310 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
          1 TAGGGGCAAAAATGTAATTATGCAAAAGTT

       6340 CGTATTAAAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28


Consensus pattern (30 bp):   
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Done.