genome.fa.s267.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2139
Parameters: 2 7 7 80 10 50 1000
Length:  53950

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085--1125	21	2.0	21	90	0	64	26	0	0	73	0.84
1676--2085	136	3.0	132	78	12	408	31	17	21	30	1.96
8962--8999	15	2.7	15	84	12	53	31	13	10	44	1.77
24062--24204	72	2.0	74	84	10	190	26	23	18	31	1.97
25556--25642	41	2.2	40	83	6	113	26	21	27	24	1.99
27103--27352	79	3.2	78	72	10	222	31	13	24	30	1.93
27023--27375	158	2.2	156	83	5	451	34	13	23	29	1.92
29118--29175	8	7.4	8	77	11	66	36	1	31	31	1.68
29706--29751	24	2.0	23	82	4	56	30	19	4	45	1.70
29833--30112	99	2.9	99	91	3	435	45	7	5	41	1.55
30001--30034	16	2.2	16	89	5	52	41	8	0	50	1.34
30136--30160	5	5.0	5	100	0	50	20	0	0	80	0.72
30078--30523	91	4.8	91	88	6	655	34	6	4	55	1.45
30508--30537	5	6.0	5	92	0	51	23	0	0	76	0.78
30710--30825	9	12.7	9	73	10	92	43	13	1	40	1.54
30710--30825	27	4.2	27	72	12	110	43	13	1	40	1.54
34952--35059	51	2.1	52	92	1	182	18	39	15	25	1.90
36132--36161	13	2.3	13	94	0	51	36	50	0	13	1.42
36285--36327	17	2.4	18	88	11	70	51	2	0	46	1.13
36454--36597	39	3.6	40	79	10	152	29	21	22	26	1.99
36686--36773	39	2.2	40	87	2	124	22	22	21	32	1.98
40943--41869	450	2.1	439	81	9	1055	30	11	16	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43921--44004	43	2.0	43	92	0	141	48	19	7	25	1.73
46810--46977	39	4.3	39	92	0	273	15	26	21	36	1.93
48336--48463	32	3.8	32	80	15	159	34	19	23	22	1.97
48332--48475	32	4.1	37	74	22	141	34	18	24	22	1.96
48332--48475	70	2.1	70	95	0	261	34	18	24	22	1.96
51834--52001	39	4.3	39	93	0	291	14	26	22	36	1.93
52402--52453	24	2.2	24	89	0	77	55	9	1	32	1.43

Tables:   1

The End!