Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1129
Parameters: 2 7 7 80 10 50 1000
Length:  12979

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1175--1267
39
2.5
37
80
7
98
27
29
22
20
1.98
1411--1469
25
2.4
25
81
13
70
33
23
0
42
1.55
1411--1477
24
2.7
25
82
11
68
32
22
0
44
1.53
1621--1665
3
15.0
3
80
0
54
57
6
0
35
1.25
1621--1667
18
2.6
18
93
0
76
55
8
0
36
1.31
1625--1665
12
3.4
12
93
0
64
56
7
0
36
1.27
1742--1779
18
2.1
19
95
5
69
34
26
10
28
1.90
2437--2475
12
3.4
11
80
13
51
46
2
0
51
1.14
2409--2491
24
3.6
24
76
15
86
48
1
0
50
1.08
3376--3410
16
2.2
16
89
0
52
2
14
8
74
1.17
3418--3468
14
3.7
14
75
19
54
49
1
0
49
1.12
3408--3485
23
3.5
22
80
11
88
47
1
0
51
1.09
3418--3482
27
2.4
28
82
7
80
47
1
0
50
1.10
4374--4407
16
2.1
16
88
0
50
2
14
8
73
1.19
4428--4482
21
2.8
20
71
17
51
49
1
0
49
1.11
4406--4474
19
3.7
17
71
19
57
47
1
0
50
1.09
4444--4488
19
2.4
19
81
7
56
51
2
0
46
1.13
5410--5485
16
4.9
17
68
26
53
50
1
0
48
1.09
5412--5451
14
2.6
16
84
11
57
52
0
0
47
1.00
5404--5491
23
3.9
21
71
19
70
50
1
0
48
1.08
5428--5485
19
3.3
18
79
11
59
50
1
0
48
1.11
5441--5490
20
2.6
19
83
3
64
50
2
0
48
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10382--10424
21
2.0
21
82
8
52
23
20
4
51
1.66
11461--11593
39
3.4
38
74
13
112
29
27
21
21
1.98
11696--11754
25
2.4
25
81
13
70
33
23
0
42
1.55
11696--11762
24
2.7
25
82
11
68
32
22
0
44
1.53
11905--11949
3
15.0
3
80
0
54
57
6
0
35
1.25
11905--11951
18
2.6
18
93
0
76
55
8
0
36
1.31
11909--11949
12
3.4
12
93
0
64
56
7
0
36
1.27
12671--12705
12
3.0
12
87
4
54
45
2
0
51
1.16

Tables:   1

The End!