genome.fa.s268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold766
Parameters: 2 7 7 80 10 50 1000
Length:  53692

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4820--4890	32	2.2	33	82	2	90	29	25	19	25	1.99
7318--7350	16	2.1	16	94	0	57	30	33	9	27	1.88
14772--15422	47	13.7	47	92	2	1088	33	8	28	29	1.86
14772--15418	96	6.8	96	93	2	1096	33	8	28	29	1.86
14772--15425	143	4.6	143	96	1	1183	33	8	28	29	1.86
15354--15496	74	1.9	74	95	2	245	32	9	26	31	1.88
15306--15532	121	1.9	120	94	1	391	33	8	28	30	1.86
15399--15452	27	2.0	27	100	0	108	33	11	22	33	1.89
15256--15583	170	1.9	168	91	1	530	32	8	29	29	1.87
15405--15461	27	2.3	23	82	14	62	31	12	24	31	1.92
15426--15583	47	3.4	47	88	0	226	31	8	31	28	1.87
26297--26334	3	12.7	3	88	0	58	71	2	26	0	1.00
34921--35044	27	4.6	27	80	4	124	41	21	8	28	1.81
34914--35048	54	2.5	53	77	7	146	40	22	8	29	1.83
35015--35209	81	2.4	81	78	6	216	33	22	8	35	1.85
35054--35183	54	2.4	54	90	0	206	30	23	7	38	1.83
35056--35198	54	2.6	54	87	0	196	32	22	7	37	1.83
35056--35183	27	4.7	27	86	0	184	29	24	7	38	1.83
35056--35227	54	3.2	53	83	3	182	33	22	8	36	1.84
35058--35227	81	2.1	81	82	2	207	33	22	7	36	1.83
35150--35289	54	2.6	54	82	2	147	40	22	7	29	1.81
35218--35289	27	2.7	27	84	0	90	47	22	5	25	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35218--35316	27	3.7	26	75	5	72	42	22	7	28	1.79
35301--35658	27	13.3	27	87	0	482	34	18	21	24	1.96
35638--35700	27	2.3	27	77	0	72	20	19	22	38	1.94
36063--36158	25	3.6	25	77	15	93	17	19	16	45	1.85
36070--36127	19	3.4	19	69	30	67	18	18	17	44	1.87
36060--36128	31	2.2	31	97	0	129	20	17	15	46	1.84
36060--36172	6	18.3	6	68	21	65	18	18	15	46	1.84
39084--39181	24	4.0	24	77	6	90	34	18	20	26	1.95
40219--40330	27	4.2	26	83	7	134	37	23	23	16	1.93
40219--40330	54	2.1	54	86	3	154	37	23	23	16	1.93
43244--43282	20	2.0	19	85	5	51	38	12	12	35	1.82
43472--43513	21	2.0	21	85	0	57	40	19	7	33	1.78
46302--46572	47	5.8	45	78	9	251	24	29	18	26	1.98
46302--46571	94	2.9	92	79	10	282	24	30	18	27	1.98
46302--46566	140	1.9	141	86	6	378	24	29	18	27	1.98
50665--50706	20	2.1	20	100	0	84	40	16	14	28	1.88
51063--51133	34	2.1	34	100	0	142	29	26	11	32	1.91

Tables:   1

The End!