genome.fa.s2681.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3227
Parameters: 2 7 7 80 10 50 1000
Length:  43529

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7379--7559	40	4.6	39	84	5	204	25	21	28	24	1.99
8564--8618	27	2.0	27	86	6	76	38	16	20	25	1.92
8608--8715	27	4.0	26	78	8	101	31	14	16	37	1.89
8609--8717	54	2.0	54	82	3	130	32	14	15	37	1.88
9048--9086	18	2.2	18	80	0	51	23	23	12	41	1.88
11179--11215	19	1.9	19	88	0	56	13	16	0	70	1.17
12087--12251	27	6.1	27	84	0	213	44	23	14	18	1.86
12094--12281	54	3.5	54	82	0	214	43	21	15	19	1.88
12266--12300	16	2.2	16	94	0	61	37	5	28	28	1.80
12287--12502	27	8.0	27	74	5	186	27	14	18	39	1.89
12286--12504	81	2.7	80	75	3	224	27	14	17	39	1.89
13265--13573	154	2.0	154	91	0	501	36	13	15	34	1.86
14942--14995	20	2.7	19	75	11	54	27	20	31	20	1.97
16544--16582	18	2.1	19	85	4	53	7	23	2	66	1.30
16600--16649	18	2.8	18	81	0	64	14	30	0	56	1.39
16653--16749	42	2.3	42	91	1	151	14	23	5	56	1.58
16660--16727	21	3.2	21	65	8	57	11	22	7	58	1.57
19171--19224	20	2.7	19	75	11	54	27	20	31	20	1.97
21703--21870	27	6.2	27	87	4	214	39	19	18	22	1.92
21882--22058	27	6.6	27	80	5	187	27	15	16	40	1.89
22009--22085	27	2.9	27	80	0	73	28	9	20	41	1.83
21879--22098	81	2.7	80	81	5	262	27	14	17	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22420--22456	18	2.1	18	94	0	65	18	24	16	40	1.90
25193--25307	23	4.8	24	78	9	112	22	21	20	35	1.96
25635--25723	43	2.1	43	100	0	178	32	6	13	47	1.69
29857--29926	28	2.6	27	86	2	86	28	20	28	22	1.98
29802--29953	55	2.8	53	81	4	178	28	16	27	26	1.97
29803--29958	27	5.7	27	78	6	145	28	16	28	27	1.97
37855--38005	54	2.8	54	80	8	173	29	16	27	27	1.97
37856--38010	27	5.7	27	78	7	145	28	16	27	27	1.97

Tables:   1

The End!