Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold3812

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26999
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:15117 original size:45 final size:45

Alignment explanation


    Indices: 15062--15217  Score: 154
    Period size: 45  Copynumber: 3.4  Consensus size: 45

      15052 CCGAACTCAC

                                              *      *    
      15062 TTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAAC-CG
          1 TTGAGTTGAGT-CGAGTTCATTTATGGATGCGAACGTCCGAGCTCG

                                *  **   *  * *    *          
      15107 TTGAGTTGAGTCCGAGTTTCGTGAAATGTA-ACTAGACATCCGAGCTCG
          1 TTGAGTTGAGT-CGAG-TTCAT-TTATGGATGCGA-ACGTCCGAGCTCG

                               *               *         
      15155 TTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCG
          1 TTGAGTTGAGTCGAGTTCATTTATGGATGCGAACGTCCGAGCTCG

                              
      15200 TTGAGTTGAGTCGAGTTC
          1 TTGAGTTGAGTCGAGTTC

      15218 GCTTATGGGC


Statistics
Matches: 88,  Mismatches: 18, Indels: 10
        0.76            0.16        0.09

Matches are distributed among these distances:
  45   49  0.56
  46   11  0.12
  47   15  0.17
  48   13  0.15

ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30


Consensus pattern (45 bp):   
TTGAGTTGAGTCGAGTTCATTTATGGATGCGAACGTCCGAGCTCG
Done.