genome.fa.s2687.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold472
Parameters: 2 7 7 80 10 50 1000
Length:  30491

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1541--1598	30	1.9	31	85	3	82	41	3	22	32	1.71
1807--1838	13	2.5	13	94	0	55	31	0	12	56	1.37
1935--2138	52	3.8	52	78	14	161	25	24	28	21	1.99
1990--2177	52	3.7	49	79	15	186	26	23	30	19	1.98
1988--2184	100	2.0	101	82	11	244	25	23	29	20	1.99
7529--7775	50	4.8	50	83	4	271	20	28	23	26	1.99
7528--7775	100	2.4	104	87	5	344	20	28	23	26	1.99
7870--7901	13	2.5	13	94	0	55	56	12	0	31	1.37
8111--8168	30	1.9	30	89	0	89	31	24	3	41	1.71
9655--9704	11	4.4	11	82	9	64	64	2	0	34	1.05
11323--11374	21	2.5	21	87	0	77	30	23	28	17	1.97
12654--12704	5	10.2	5	79	8	59	52	1	0	45	1.12
12653--12707	21	2.8	20	86	5	76	52	1	0	45	1.11
12654--12706	16	3.5	16	82	12	67	52	1	0	45	1.11
15557--15611	13	4.2	13	78	17	60	18	3	3	74	1.11
15549--15608	9	7.0	8	75	17	50	15	3	3	78	1.01
15690--15740	19	2.6	19	87	6	66	43	0	0	56	0.99
15664--15724	13	5.1	13	70	24	53	42	0	1	55	1.09
15621--15725	34	2.9	34	77	13	104	43	0	1	53	1.18
15690--15735	20	2.3	21	88	7	69	41	0	0	58	0.98
15710--15753	19	2.3	19	84	4	52	45	0	2	52	1.13
18906--18936	16	1.9	16	100	0	62	32	29	6	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20808--20864	27	2.1	28	77	9	64	38	3	0	57	1.16
20818--20873	27	2.1	27	86	3	78	39	1	0	58	1.08
22164--22198	14	2.5	14	85	0	52	34	0	28	37	1.58
22778--22916	39	3.6	38	89	2	197	49	5	15	29	1.66
22776--22934	39	4.1	38	87	4	192	45	5	20	28	1.72

Tables:   1

The End!