Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2611

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7633
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32


Found at i:1206 original size:17 final size:18

Alignment explanation


    Indices: 1186--1220  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1176 ATACCTTCAC

                              
       1186 AGCTTGG-CGACCTTGAT
          1 AGCTTGGTCGACCTTGAT

                    *         
       1203 AGCTTGGTGGACCTTGAT
          1 AGCTTGGTCGACCTTGAT

       1221 CTCAGCAGCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    7  0.44
  18    9  0.56

ACGTcount: A:0.17, C:0.20, G:0.31, T:0.31


Consensus pattern (18 bp):   
AGCTTGGTCGACCTTGAT
Done.