Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1452
Parameters: 2 7 7 80 10 50 1000
Length:  52499

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1296--1493
40
5.2
40
90
7
290
26
28
21
23
1.99
1296--1511
79
2.8
76
85
11
284
25
28
21
24
1.99
9195--9398
40
5.2
40
92
2
299
27
27
22
23
1.99
14109--14436
27
12.2
27
83
3
347
28
21
7
41
1.80
14109--14436
81
4.1
81
84
3
383
28
21
7
41
1.80
14441--14636
27
7.3
27
84
0
230
35
18
19
26
1.95
14835--14917
27
3.1
26
81
5
85
21
20
19
38
1.93
15005--15063
22
2.7
22
81
0
64
22
23
22
32
1.98
15228--15301
27
2.8
25
74
13
67
17
22
20
39
1.92
15444--15605
6
26.8
6
77
15
165
19
16
14
49
1.80
15419--15605
30
6.4
30
82
9
224
19
17
14
48
1.81
15484--15546
25
2.6
24
92
2
99
17
19
15
47
1.83
15419--15605
85
2.2
85
95
0
329
19
17
14
48
1.81
15419--15626
30
7.1
30
81
11
207
19
17
14
48
1.81
16476--16510
17
2.1
17
100
0
70
51
22
0
25
1.48
18714--18774
30
2.0
30
83
0
77
31
22
8
37
1.84
32068--32252
40
4.7
40
82
7
209
23
21
28
26
1.99
32069--32250
79
2.3
81
82
7
221
23
21
28
25
1.99
32102--32275
79
2.2
78
80
10
192
25
20
27
26
1.99
35544--35706
40
4.1
39
85
5
186
26
26
22
24
2.00
43929--44192
40
6.6
39
86
5
293
24
22
26
26
2.00
43932--44192
80
3.3
80
87
5
343
24
22
26
26
2.00

Tables:   1

The End!