Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold312

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24535
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:16133 original size:22 final size:23

Alignment explanation


    Indices: 16108--16152  Score: 65
    Period size: 22  Copynumber: 2.0  Consensus size: 23

      16098 GATTAAAATT

                                   
      16108 AAATAATAATTAATTTT-TCAAA
          1 AAATAATAATTAATTTTATCAAA

                    *   *          
      16130 AAATAATATTTACTTTTATCAAA
          1 AAATAATAATTAATTTTATCAAA

      16153 CAACTATATT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  22   15  0.75
  23    5  0.25

ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42


Consensus pattern (23 bp):   
AAATAATAATTAATTTTATCAAA
Done.