Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold349

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 28306
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30


Found at i:22248 original size:23 final size:22

Alignment explanation


    Indices: 22196--22248  Score: 56
    Period size: 23  Copynumber: 2.4  Consensus size: 22

      22186 TCCACGTCTT

                    *             
      22196 TTTCTTTTGTTTCTTTTTCTAA
          1 TTTCTTTTCTTTCTTTTTCTAA

                                     
      22218 -TTCATTTTCTCTTCTTTCTTC-AA
          1 TTTC-TTTTCT-TTCTTT-TTCTAA

                    
      22241 TTTCTTTT
          1 TTTCTTTT

      22249 TCACTCTCAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 7
        0.76            0.03        0.21

Matches are distributed among these distances:
  21    3  0.12
  22    5  0.19
  23   12  0.46
  24    6  0.23

ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70


Consensus pattern (22 bp):   
TTTCTTTTCTTTCTTTTTCTAA
Done.