Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2143
Parameters: 2 7 7 80 10 50 1000
Length:  16875

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45--233
27
7.0
27
81
4
193
34
17
20
26
1.95
1595--1766
46
3.8
45
75
14
181
22
19
27
29
1.98
4465--4512
16
3.1
15
90
6
69
64
2
2
31
1.16
4461--4512
8
6.5
8
82
8
61
65
1
1
30
1.14
4460--4516
24
2.4
24
79
5
71
64
1
3
29
1.20
4658--4722
25
2.7
25
88
6
91
52
4
7
35
1.51
4711--4787
29
2.5
31
81
8
79
58
2
6
32
1.37
4735--4871
51
2.9
46
73
18
120
59
2
4
34
1.30
4740--4797
24
2.4
24
82
2
71
60
0
3
36
1.14
5356--5555
29
6.8
29
91
4
314
22
3
49
25
1.66
5356--5555
87
2.3
88
92
3
350
22
3
49
25
1.66
6296--6344
14
3.5
14
83
8
55
63
4
12
20
1.45
6325--7188
72
12.2
72
68
18
310
34
20
15
30
1.93
6367--6747
208
1.9
201
84
8
518
33
20
14
30
1.93
6562--6821
77
3.5
74
85
7
348
32
21
15
30
1.94
6328--7097
279
2.8
279
90
5
1179
34
20
15
29
1.94
6567--7365
349
2.3
338
84
8
987
33
21
14
30
1.93
6844--7174
73
4.5
74
85
7
426
31
21
15
32
1.94
6844--7178
143
2.3
144
83
6
419
31
20
15
31
1.94
7197--7365
70
2.4
70
85
4
209
34
23
14
28
1.93
15649--15696
16
3.1
15
90
6
69
64
2
2
31
1.16
15645--15700
24
2.3
24
81
6
69
66
1
1
30
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15645--15696
8
6.5
8
82
8
61
65
1
1
30
1.14
15845--15909
25
2.8
24
83
6
80
52
6
7
33
1.55
15839--16059
25
9.0
25
68
17
72
56
3
5
34
1.41
15898--15975
29
2.7
29
82
7
79
58
2
5
33
1.33
16550--16626
25
2.9
25
87
11
109
24
1
48
25
1.59
16530--16635
29
3.9
28
84
12
148
21
2
49
26
1.64
16638--16695
29
2.0
30
90
10
93
17
3
48
31
1.64
16643--16703
29
2.2
27
86
13
81
18
4
47
29
1.69

Tables:   1

The End!