Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1520
Parameters: 2 7 7 80 10 50 1000
Length:  48550

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48--540
47
10.6
47
90
4
766
32
8
30
28
1.87
11501--11561
20
3.1
20
86
6
81
32
3
0
63
1.10
11501--11666
10
17.6
9
66
19
63
36
4
1
58
1.25
11506--11673
20
8.8
19
72
19
77
35
4
1
58
1.28
18377--18406
15
2.0
15
100
0
60
20
40
0
40
1.52
19202--19249
3
16.0
3
100
0
96
66
0
0
33
0.92
30875--30952
33
2.4
33
79
12
88
30
17
25
25
1.97
32711--32774
18
3.6
18
83
8
85
32
15
14
37
1.87
32886--32920
6
5.8
6
96
0
61
45
17
20
17
1.85
32896--33011
51
2.2
53
83
7
139
41
20
20
17
1.90
33168--33204
19
2.0
19
89
5
58
37
10
2
48
1.52
35570--35698
50
2.5
51
88
2
197
35
17
21
25
1.95
35674--35822
31
4.8
31
94
0
253
26
20
28
25
1.99
35922--36052
42
2.9
48
86
9
159
29
15
25
29
1.96
35982--36079
42
2.3
42
92
3
162
30
14
27
27
1.95
37345--37389
19
2.4
18
86
13
65
0
33
0
66
0.92
39653--39762
26
4.2
26
96
0
184
34
5
24
35
1.79
41378--41463
27
3.2
27
86
4
104
17
23
23
36
1.95
43676--43727
25
2.0
25
81
3
59
26
13
21
38
1.90
45205--45286
26
3.2
26
98
0
155
36
25
7
30
1.83

Tables:   1

The End!