Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1296

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24035
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35


Found at i:67 original size:15 final size:15

Alignment explanation


    Indices: 47--80  Score: 59
    Period size: 15  Copynumber: 2.3  Consensus size: 15

         37 CAATTCTCGG

                           
         47 TTTACTAACCCAATT
          1 TTTACTAACCCAATT

                     *     
         62 TTTACTAACTCAATT
          1 TTTACTAACCCAATT

                
         77 TTTA
          1 TTTA

         81 ATATGTAAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47


Consensus pattern (15 bp):   
TTTACTAACCCAATT
Done.