Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3278
Parameters: 2 7 7 80 10 50 1000
Length:  33558

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1410--1440
14
2.2
14
94
0
53
19
9
32
38
1.84
2787--2913
65
2.0
63
95
3
227
29
15
11
43
1.83
3069--3117
24
2.0
24
100
0
98
26
20
12
40
1.87
6094--6138
23
2.0
22
83
8
56
57
0
0
42
0.98
6112--6185
19
3.8
18
73
18
60
62
1
1
35
1.12
6098--6214
29
3.9
30
75
14
91
63
2
0
33
1.14
23330--23365
17
2.1
18
90
10
58
77
2
0
19
0.88
23363--23464
30
3.4
30
86
2
134
29
21
3
45
1.70
23891--23930
14
2.9
15
82
14
50
55
0
42
2
1.13
24007--24078
11
6.2
12
81
13
80
73
0
26
0
0.83
24007--24112
36
2.9
37
78
17
114
72
0
26
0
0.91
24013--24130
10
11.0
10
76
20
73
75
0
22
2
0.92
24007--24092
12
7.2
13
79
12
96
73
0
26
0
0.84
24007--24114
47
2.3
48
84
10
134
73
0
25
0
0.90
24016--24114
37
2.7
36
81
12
112
74
0
24
1
0.88
24017--24113
20
4.4
21
77
14
81
74
0
24
1
0.89
24052--24121
22
3.2
21
80
10
79
77
0
20
2
0.90
24222--24260
13
2.9
13
88
3
51
76
7
15
0
0.99
24414--24450
16
2.5
14
91
8
56
86
0
13
0
0.57
24545--24575
16
1.9
16
93
0
53
35
0
6
58
1.24
24979--25304
17
18.8
17
65
17
73
33
12
11
42
1.78
24970--25068
32
2.9
34
79
10
105
38
13
12
36
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25009--25164
18
8.8
18
69
10
81
32
14
9
43
1.77
25005--25059
16
3.3
16
82
9
74
41
10
10
36
1.75
25005--25076
36
2.1
34
86
5
99
38
12
11
37
1.79
25052--25155
52
2.0
53
88
1
156
32
14
8
44
1.76
25162--25237
35
2.2
34
83
6
91
32
7
13
46
1.72
25138--25304
18
9.5
17
71
16
76
32
11
11
44
1.76
25353--25388
17
2.2
17
90
5
56
36
8
8
47
1.64
25461--25513
16
3.3
15
82
12
61
32
7
9
50
1.62

Tables:   1

The End!