Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold3447

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15164
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:201 original size:14 final size:15

Alignment explanation


    Indices: 177--206  Score: 53
    Period size: 14  Copynumber: 2.1  Consensus size: 15

        167 CTGTTTTCGA

                           
        177 TTTCTTTTCTTTACT
          1 TTTCTTTTCTTTACT

                           
        192 TTTC-TTTCTTTACT
          1 TTTCTTTTCTTTACT

             
        206 T
          1 T

        207 GTGCCGATTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14   11  0.73
  15    4  0.27

ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73


Consensus pattern (15 bp):   
TTTCTTTTCTTTACT
Done.