Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold820
Parameters: 2 7 7 80 10 50 1000
Length:  46893

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10272--10405
43
2.9
45
82
8
155
22
16
30
30
1.96
12220--12395
50
3.5
49
85
3
235
30
26
17
26
1.97
12220--12404
101
1.8
99
88
2
280
30
26
17
25
1.97
12815--12850
19
1.9
19
88
5
56
44
11
0
44
1.39
17739--17769
5
6.0
5
92
7
53
22
0
0
77
0.77
20662--20756
25
3.8
25
87
5
122
26
23
24
26
2.00
20661--20769
25
4.4
24
83
10
98
28
22
23
25
1.99
20976--21078
31
3.3
31
94
0
179
35
15
24
24
1.94
28810--28904
25
3.8
25
87
5
122
26
23
24
26
2.00
28834--28917
25
3.4
25
85
4
107
29
21
22
26
1.99
29123--29237
31
3.7
31
90
1
187
33
16
26
24
1.96
30715--30766
5
10.2
5
76
12
52
17
5
0
76
0.97
30724--30782
20
3.1
18
79
13
57
15
6
3
74
1.16
30719--30768
26
2.0
26
88
4
75
16
8
0
76
1.02
30999--31096
49
2.0
49
97
0
187
26
11
12
50
1.73
33369--33474
27
3.9
27
83
10
126
36
21
23
17
1.95
33362--33474
55
2.1
54
85
5
147
37
22
23
17
1.94
34705--34776
36
2.0
34
84
13
90
55
1
36
6
1.35
37860--38010
71
2.1
71
91
2
241
30
29
17
23
1.97
37930--38151
103
2.2
103
91
3
358
31
31
18
18
1.95
37860--38048
71
2.6
70
86
7
227
30
30
17
21
1.96
38023--38073
26
2.0
26
96
0
93
29
35
23
11
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38480--38543
30
2.2
29
81
10
76
29
28
6
35
1.82
38487--38543
30
1.9
30
85
3
80
29
24
7
38
1.82
45399--45450
26
2.0
26
92
0
86
28
34
21
15
1.94
45411--45594
68
2.6
70
86
7
228
30
30
16
21
1.95
45570--45620
26
2.0
26
96
0
93
29
35
23
11
1.90
45479--45697
102
2.2
102
92
4
363
31
31
18
18
1.95
46024--46087
30
2.2
29
81
10
76
29
28
6
35
1.82
46031--46087
30
1.9
30
85
3
80
29
24
7
38
1.82

Tables:   1

The End!