genome.fa.s28.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold559_ERROPOS3517101
Parameters: 2 7 7 80 10 50 1000
Length:  170279

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732--872	40	3.6	40	94	2	250	22	21	29	25	1.99
2412--2490	37	2.1	37	90	0	122	25	31	18	24	1.98
2609--3110	47	10.6	47	96	1	880	29	29	8	32	1.87
2609--3110	96	5.3	94	95	3	880	29	29	8	32	1.87
2609--3110	143	3.5	141	95	3	880	29	29	8	32	1.87
3338--3436	40	2.5	40	86	3	128	27	27	22	23	1.99
13131--13232	34	3.0	34	80	7	100	24	21	27	26	1.99
18087--18182	24	3.8	24	73	15	95	40	14	19	25	1.90
18083--18196	52	2.2	52	92	3	185	36	14	21	27	1.92
18226--18376	52	3.0	52	80	3	200	31	14	27	27	1.95
18229--18408	51	3.5	50	78	5	200	29	14	28	27	1.95
23318--23686	27	13.7	27	79	4	323	40	19	8	31	1.82
26679--26780	28	3.6	28	87	0	150	21	12	34	31	1.91
27122--27449	27	12.3	27	76	7	201	37	22	10	30	1.87
27122--27449	53	6.2	53	74	7	152	37	22	10	30	1.87
27122--27449	54	6.1	54	77	6	310	37	22	10	30	1.87
27430--27491	27	2.3	27	94	0	106	41	11	12	33	1.79
27137--27480	81	4.3	81	77	5	225	37	20	9	31	1.86
27979--28004	11	2.4	11	100	0	52	26	0	19	53	1.45
31304--31347	15	3.0	14	80	9	52	27	0	4	68	1.09
32228--32273	23	2.0	24	83	12	60	17	10	2	69	1.27
32239--32278	19	2.1	19	95	0	71	15	12	0	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36487--36530	15	3.0	14	80	9	52	27	0	4	68	1.09
37410--37455	23	2.0	24	83	12	60	17	10	2	69	1.27
37421--37460	19	2.1	19	95	0	71	15	12	0	72	1.12
38088--38188	43	2.4	42	80	11	107	31	26	16	24	1.97
43809--43929	39	3.1	39	95	0	206	20	24	31	23	1.98
47197--47388	52	3.8	51	81	10	200	29	14	28	28	1.95
47197--47388	51	3.8	50	80	6	208	29	14	28	28	1.95
51188--51357	40	4.3	40	83	4	200	24	21	29	24	1.99
51210--51392	79	2.3	79	80	5	199	25	21	28	24	1.99
53361--53495	37	3.6	37	81	3	119	25	27	25	22	2.00
53390--53498	37	2.9	37	86	0	137	26	26	23	22	2.00
61719--61761	13	3.2	13	86	3	59	51	2	0	46	1.13
67184--67359	27	6.5	27	84	0	217	38	21	9	30	1.85
67184--67416	54	4.3	53	80	3	225	38	21	9	30	1.86
67204--67420	81	2.7	81	81	4	215	37	20	10	31	1.86
67184--67413	27	8.5	27	80	5	182	38	21	10	30	1.86
67460--67727	27	10.0	27	89	2	378	32	20	22	24	1.98
68369--68424	26	2.2	26	83	3	69	16	23	21	39	1.92
68377--68449	27	2.7	27	87	2	94	17	26	20	35	1.95
68581--68712	31	4.3	31	87	2	187	18	14	17	50	1.79
68581--68723	6	23.3	6	73	17	116	18	14	17	49	1.79
70746--70923	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70747--70902	82	1.9	81	88	3	233	26	15	28	29	1.96
70743--70923	82	2.2	81	83	2	229	27	15	27	29	1.96
83887--84062	46	3.8	46	79	14	209	21	19	28	30	1.98
83884--84055	93	1.8	93	95	2	310	21	20	29	29	1.98
85364--85405	22	2.0	22	90	4	68	45	28	11	14	1.80
85608--85672	22	3.0	22	75	8	69	30	21	26	21	1.98
85816--85936	41	3.0	41	88	0	161	27	27	22	23	1.99
86193--86405	27	7.9	26	79	7	160	30	8	18	41	1.81
86193--86405	54	3.9	53	79	6	212	30	8	18	41	1.81
86191--86405	81	2.7	81	80	8	242	30	8	18	41	1.81
86394--86497	27	3.9	27	89	0	145	29	23	14	32	1.94
92847--92968	46	2.9	43	75	18	139	39	9	13	37	1.77
93188--93321	58	2.3	58	83	6	182	43	0	3	52	1.24
93487--93538	16	3.2	16	75	0	50	32	21	3	42	1.71
96675--96715	19	2.1	19	86	9	55	58	2	7	31	1.38
97776--97886	19	5.9	19	75	1	80	18	27	27	26	1.98
99614--99669	21	2.7	21	94	0	103	14	35	35	14	1.86
99785--99865	42	1.9	42	82	5	101	20	32	28	18	1.97
104709--105064	46	7.7	46	88	1	471	41	14	23	20	1.88
104712--105064	93	3.8	93	89	1	539	41	14	23	20	1.88
104709--105064	185	1.9	185	92	1	597	41	14	23	20	1.88
109229--109299	35	2.0	35	100	0	142	25	25	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118941--119075	49	2.8	47	84	6	146	26	17	30	25	1.97
118940--119076	24	5.6	24	75	6	98	27	16	30	25	1.97
121103--121196	46	2.0	46	100	0	188	23	18	19	39	1.92
122177--122255	20	4.0	20	80	4	81	32	10	12	44	1.76
122168--122255	40	2.2	40	82	8	99	30	11	13	44	1.79
126650--126777	28	4.5	28	88	2	175	28	12	25	32	1.92
126650--126777	57	2.2	57	88	2	186	28	12	25	32	1.92
128396--128579	27	6.8	27	86	0	260	30	23	6	39	1.80
128377--128579	81	2.5	81	87	1	291	32	22	6	38	1.81
128377--128607	81	2.8	79	84	2	264	33	22	6	37	1.81
128702--128783	29	2.9	28	80	10	96	45	15	7	31	1.74
128558--128787	27	8.4	27	77	8	144	41	19	7	31	1.79
128828--128909	26	3.2	26	73	13	71	39	20	19	20	1.93
129224--129268	17	2.4	19	85	14	58	17	28	33	20	1.95
129714--129783	25	2.8	24	85	8	86	27	22	22	27	1.99
129739--129810	25	3.0	24	78	13	67	29	20	22	27	1.99
130004--130084	31	2.7	31	92	3	130	29	18	23	28	1.98
133440--133472	15	2.1	17	88	11	52	27	18	30	24	1.98
137097--137271	47	3.8	46	79	9	151	31	19	25	23	1.98
138962--138992	9	3.4	9	90	0	53	12	64	0	22	1.27
147294--147551	56	4.6	56	85	3	358	26	15	23	34	1.95
149626--149668	23	1.9	22	90	4	68	34	0	9	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153942--154196	109	2.3	111	86	4	347	26	14	24	35	1.93
153942--154196	56	4.6	56	85	4	329	26	14	24	35	1.93
158578--158846	46	5.7	47	76	9	230	29	19	27	23	1.98
158583--158846	140	1.9	141	82	7	331	29	19	27	23	1.98
160350--160387	19	2.0	19	100	0	76	36	5	26	31	1.79
163718--163972	40	6.2	40	77	8	190	30	26	16	27	1.96
163718--163909	82	2.3	82	88	1	278	29	27	16	26	1.97
163781--163954	42	4.2	42	82	3	183	28	25	16	29	1.96
165240--165431	39	4.9	39	95	0	339	20	20	30	27	1.98
165243--165468	39	5.8	39	91	1	184	20	22	31	25	1.98
165240--165459	117	1.9	117	87	1	325	20	21	30	26	1.98
165240--165511	117	2.3	117	83	5	291	20	20	30	28	1.98
167511--167688	27	6.6	27	84	3	205	29	28	15	26	1.96
167532--167687	82	1.9	81	88	3	233	29	28	15	26	1.96
169830--169861	12	2.7	12	100	0	64	46	18	6	28	1.73

Tables:   1

The End!