Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold831

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11816
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31


Found at i:3116 original size:40 final size:40

Alignment explanation


    Indices: 3061--3327  Score: 480
    Period size: 40  Copynumber: 6.7  Consensus size: 40

       3051 AACATTGGAT

                                                    
       3061 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
          1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA

                                                    
       3101 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
          1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA

                                                    
       3141 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
          1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA

            *                                       
       3181 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
          1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA

                         *                    * *   
       3221 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
          1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA

                                                    
       3261 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
          1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA

               *      *                
       3301 TATGTCCGGGTTAAGACCCGAAGGCAA
          1 TATATCCGGGCTAAGACCCGAAGGCAA

       3328 ATGTGTTTGC


Statistics
Matches: 217,  Mismatches: 10, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  40  217  1.00

ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22


Consensus pattern (40 bp):   
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA

Done.