Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2776
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37934
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Found at i:837 original size:34 final size:33
Alignment explanation
Indices: 771--837 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 33
761 CTTTGTGCAT
*
771 TACTGATATTGTACTGTAATGGGTTAAGGCCCA
1 TACTGATATTGCACTGTAATGGGTTAAGGCCCA
804 TACTGATATTGCCACTG-ATATGGGCTTAA-GCCCA
1 TACTGATATTG-CACTGTA-ATGGG-TTAAGGCCCA
838 GATTGTTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 12 0.40
34 14 0.47
35 4 0.13
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (33 bp):
TACTGATATTGCACTGTAATGGGTTAAGGCCCA
Found at i:3352 original size:24 final size:23
Alignment explanation
Indices: 3325--3390 Score: 62
Period size: 24 Copynumber: 2.8 Consensus size: 23
3315 GAAATTGAAA
* *
3325 GAAAAAGTACAAGAAAAAAAGAGT
1 GAAAAAGAAAAAGAAAAAAA-AGT
* *
3349 GAAAAAGAAAAAGAGAAAAAATT
1 GAAAAAGAAAAAGAAAAAAAAGT
*
3372 GAAAAA-AAGAAAGGAAAAA
1 GAAAAAGAA-AAAGAAAAAA
3391 GTGAGAGAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
22 2 0.06
23 16 0.46
24 17 0.49
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.06
Consensus pattern (23 bp):
GAAAAAGAAAAAGAAAAAAAAGT
Found at i:3367 original size:23 final size:21
Alignment explanation
Indices: 3341--3394 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 21
3331 GTACAAGAAA
3341 AAAAGAGTGAAAAAGAA-AAAGAG
1 AAAA-AGTGAAAAA-AAGAAAG-G
*
3364 AAAAAATTGAAAAAAAGAAAGG
1 -AAAAAGTGAAAAAAAGAAAGG
3386 AAAAAGTGA
1 AAAAAGTGA
3395 GAGAGATGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 8 0.30
22 3 0.11
23 12 0.44
24 4 0.15
ACGTcount: A:0.70, C:0.00, G:0.22, T:0.07
Consensus pattern (21 bp):
AAAAAGTGAAAAAAAGAAAGG
Found at i:11671 original size:32 final size:32
Alignment explanation
Indices: 11630--11730 Score: 193
Period size: 32 Copynumber: 3.2 Consensus size: 32
11620 ATGTTAATAG
*
11630 TTAAGGTTAGTTTAGTAATTCGATAAACAAAC
1 TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
11662 TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
1 TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
11694 TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
1 TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
11726 TTAAG
1 TTAAG
11731 TAAAATAACA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 68 1.00
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.35
Consensus pattern (32 bp):
TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
Found at i:14324 original size:29 final size:29
Alignment explanation
Indices: 14285--14363 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
14275 CTTAATAATC
*
14285 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
14315 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
14344 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
14364 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:19460 original size:56 final size:56
Alignment explanation
Indices: 19374--19493 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
19364 ACAAGGGATG
19374 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
19430 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
19486 ATGGGCAA
1 ATGGGCAA
19494 TAAACTAAAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:21157 original size:47 final size:47
Alignment explanation
Indices: 21103--21315 Score: 324
Period size: 47 Copynumber: 4.6 Consensus size: 47
21093 TATTTGAATA
* *
21103 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
21150 AATGTGAAAGTG--TATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
21195 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
21242 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
21289 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
21316 TCCCGAAGGG
Statistics
Matches: 152, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
45 40 0.26
46 2 0.01
47 110 0.72
ACGTcount: A:0.35, C:0.08, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:21193 original size:22 final size:22
Alignment explanation
Indices: 21166--21287 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
21156 AAAGTGTATG
21166 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
21188 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
21213 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
21235 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
21260 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
21282 TGTGAT
1 TGTGAT
21288 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:24087 original size:40 final size:40
Alignment explanation
Indices: 23575--24075 Score: 541
Period size: 40 Copynumber: 12.6 Consensus size: 40
23565 TCGAATGATG
* **
23575 TCCGGGCTAAG-TCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCT-AGTGA-TGTA
* * * * * *
23614 TCCGGACTAAGATCCGAAG-GCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TGTA
* * * * **
23653 TTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TGTA
* * * * * *
23693 TCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TGTA
* *
23733 ACCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
23773 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGTTGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
23813 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGTTGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
23853 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
23893 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* *
23933 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
23973 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
** *** * * *
24013 TCCGTACTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* *
24053 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTTCCGAAGAGCA
24076 ATCATGCTGG
Statistics
Matches: 416, Mismatches: 40, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
39 44 0.11
40 353 0.85
41 19 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:25413 original size:56 final size:56
Alignment explanation
Indices: 25348--25467 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
25338 ACAAGGGATG
25348 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
25404 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
25460 ATGGGCAA
1 ATGGGCAA
25468 TAAACTAAAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:27085 original size:38 final size:43
Alignment explanation
Indices: 27055--27222 Score: 173
Period size: 45 Copynumber: 3.7 Consensus size: 43
27045 TGAAAGTGTA
*
27055 TATATG-TGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TATATGTTGATAAGGCCGAATGGCCAATGTGA-GAATGTGAAAG
*
27098 TGTATGTTTGATAAGGCCGAATGGCCAATGTGATG-ATGTGAACATG
1 TATATG-TTGATAAGGCCGAATGGCCAATGTGA-GAATGTGAA-A-G
*
27144 CATATATG-AGATAAGGCCGAAT-GCCAATGTGATGAATGTGAAAGTG
1 --TATATGTTGATAAGGCCGAATGGCCAATGTGA-GAATGTGAAA--G
*
27190 TATATATGTGATAAGGCCGAATGGCCAATGTGA
1 TATATGT-TGATAAGGCCGAATGGCCAATGTGA
27223 TGGATGTGGA
Statistics
Matches: 108, Mismatches: 6, Indels: 18
0.82 0.05 0.14
Matches are distributed among these distances:
43 5 0.05
44 12 0.11
45 40 0.37
46 36 0.33
47 10 0.09
48 5 0.05
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (43 bp):
TATATGTTGATAAGGCCGAATGGCCAATGTGAGAATGTGAAAG
Found at i:27183 original size:46 final size:47
Alignment explanation
Indices: 27041--27251 Score: 315
Period size: 47 Copynumber: 4.6 Consensus size: 47
27031 TATTTGAATA
*
27041 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
27088 AATGTGAAAGTGTATGT-T-TGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27133 -ATGTGAACA-TGCATATATGAGATAAGGCCGAAT-GCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
27178 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
27225 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
27252 TCCCGAAGGG
Statistics
Matches: 148, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
44 12 0.08
45 41 0.28
46 43 0.29
47 52 0.35
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:31381 original size:99 final size:97
Alignment explanation
Indices: 30825--31451 Score: 623
Period size: 100 Copynumber: 6.3 Consensus size: 97
30815 TATATATGTG
* * *
30825 TGTGGTAAAGCCGTAATGGCTACTATGAAATATGTATGAGATATGTATATGTT-GTAAAGCCGAA
1 TGTGGTAAAGCCG-AATGGCTAATGTGAAATATATATGAGATATGTATATGTTGGTAAAGCCG-A
*
30889 ATGGCTTAGAATG-GAAATATGTATGAGATATGTATA
64 ATGGC-T--AATGTGAAATATATATGAGATATGTATA
* * *
30925 T-TGGTAAAAGACGAATGGCTAATATAAAATATATATGAGATATGTATATG-TGGTAAA-CCGAA
1 TGTGGT-AAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTTGGTAAAGCCGAA
* *
30987 TGGCTATTG-GAAATATATATGA-ATATTTTATA
65 TGGCTAATGTGAAATATATATGAGATA-TGTATA
* * *
31019 TGTGGT-AAGCCGAATGGCTAATGTGAACTATATA-GATGTATATGTATATG-TGGTTAAGCTGA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA-G-ATATGTATATGTTGGTAAAGCCGA
31081 ATAGGCTAATGTGAAATATGATATGAGATACTGTA-A
64 AT-GGCTAATGTGAAATAT-ATATGAGATA-TGTATA
*
31117 TGTTGTTAAAGCCGAAT-GCTTAATGTG-AATAT-TATGAGATATGTATATGTTGGTACAAGTCC
1 TG-TGGTAAAGCCGAATGGC-TAATGTGAAATATATATGAGATATGTATATGTTGGTA-AAG-CC
* *
31179 GAGATGGCTCATGTGAAATATGTTATGAGATATGTACTA
62 GA-ATGGCTAATGTGAAATAT-ATATGAGATATGTA-TA
31218 TGTGGTAAAGTCCGCAATGGCTAATTGTGAGAATATTATATGAGATATGTATATGTT-GTAAAAG
1 TGTGGTAAAG-CCG-AATGGCTAA-TGTGA-AATA-TATATGAGATATGTATATGTTGGT-AAAG
31282 CCGAATGGCTAATGTGAAA-A-ATA-GAGATATGTATA
60 CCGAATGGCTAATGTGAAATATATATGAGATATGTATA
31317 TGTGGTTAAAGCCGGAATGGCTTTAATGGTGAAATATA-ATGAGATATGTATATGTTGGTTAAAG
1 TGTGG-TAAAGCC-GAATGGC--TAAT-GTGAAATATATATGAGATATGTATATGTTGG-TAAAG
* *
31381 CCGAAATGGC--ATGTGAAATAGTGTAT-AAATATGTATA
60 CCG-AATGGCTAATGTGAAATA-TATATGAGATATGTATA
*
31418 TGTGGTAAAGTCCGAATGGCCTAGTGTGAAATAT
1 TGTGGTAAAG-CCGAATGG-CTAATGTGAAATAT
31452 GTAGGGATGT
Statistics
Matches: 455, Mismatches: 28, Indels: 90
0.79 0.05 0.16
Matches are distributed among these distances:
92 2 0.00
93 28 0.06
94 38 0.08
95 9 0.02
96 8 0.02
97 24 0.05
98 55 0.12
99 96 0.21
100 97 0.21
101 37 0.08
102 6 0.01
103 7 0.02
104 14 0.03
105 8 0.02
106 6 0.01
107 20 0.04
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (97 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTTGGTAAAGCCGAAT
GGCTAATGTGAAATATATATGAGATATGTATA
Found at i:31448 original size:252 final size:239
Alignment explanation
Indices: 30850--31453 Score: 673
Period size: 252 Copynumber: 2.4 Consensus size: 239
30840 ATGGCTACTA
* *
30850 TGAAATATGTATGAGATATGTATATGTTG-TAAAGCCGAAATGGCTTAGAATGGAAATATGTATG
1 TGAAATATGAATGAGATATGTATATGTTGTTAAAGCCGAAATGGCAT-G--T-GAAATATGTATG
* * * *
30914 AGATATGTATAT-TGGTAAAAG-ACGAATGGCTAATATAAAATAT-ATATGAGATATGTATATGT
62 AGATATGTATATGTGGT-AAAGTCCGAATGGCT-ATGTGAAATATGTTATGAGATATGTATATGT
*
30976 GGTAAACCGAATGGCTATTGGAAATATATATGAATATTTTATATGTGGTAAGCCGAATGGCTAAT
125 GGTAAACCGAATGGCTATTGGAAATATATATGAATATTGTATATGTGGTAAGCCGAATGGCTAAT
* *
31041 GTGAACTATATAGATGTATATGTATATGTGGTTAAGCTGAATAGGCTAATG
190 GTGAAC-AAATAGATGTATATGTATATGTGGTTAAGCGGAATAGGCTAATG
31092 TGAAATATGATATGAGATACTGTA-ATGTTGTTAAAGCCG-AAT-GCTTAATGTG-AATAT-TAT
1 TGAAATATGA-ATGAGATA-TGTATATGTTGTTAAAGCCGAAATGGC---ATGTGAAATATGTAT
31152 GAGATATGTATATGTTGGTACAAGTCCGAGATGGCTCATGTGAAATATGTTATGAGATATGTACT
61 GAGATATGTATATG-TGGTA-AAGTCCGA-ATGGCT-ATGTGAAATATGTTATGAGATATGTA-T
*
31217 ATGTGGTAAAGTCCGCAATGGCTAATTGTGAGAATATTATATGAGATA-TGTATATGTTGTAAAA
121 ATGTGGTAAA--CCG-AATGGCT-ATTG-GA-AATA-TATATGA-ATATTGTATATGTGGT--AA
31281 GCCGAATGGCTAATGTGAA-AAATAGA-G-ATATGTATATGTGGTTAAAGCCGGAAT-GGCTTTA
176 GCCGAATGGCTAATGTGAACAAATAGATGTATATGTATATGTGGTT-AAG-CGGAATAGGC--TA
31342 ATGG
237 AT-G
*
31346 TGAAATAT-AATGAGATATGTATATGTTGGTTAAAGCCGAAATGGCATGTGAAATAGTGTAT-AA
1 TGAAATATGAATGAGATATGTATATGTT-GTTAAAGCCGAAATGGCATGTGAAATA-TGTATGAG
31409 ATATGTATATGTGGTAAAGTCCGAATGGCCTAGTGTGAAATATGT
64 ATATGTATATGTGGTAAAGTCCGAATGG-CTA-TGTGAAATATGT
31454 AGGGATGTGG
Statistics
Matches: 313, Mismatches: 12, Indels: 64
0.80 0.03 0.16
Matches are distributed among these distances:
239 16 0.05
240 6 0.02
241 8 0.03
242 15 0.05
243 32 0.10
244 26 0.08
245 12 0.04
247 3 0.01
248 7 0.02
249 4 0.01
250 18 0.06
251 20 0.06
252 68 0.22
253 27 0.09
254 46 0.15
255 5 0.02
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (239 bp):
TGAAATATGAATGAGATATGTATATGTTGTTAAAGCCGAAATGGCATGTGAAATATGTATGAGAT
ATGTATATGTGGTAAAGTCCGAATGGCTATGTGAAATATGTTATGAGATATGTATATGTGGTAAA
CCGAATGGCTATTGGAAATATATATGAATATTGTATATGTGGTAAGCCGAATGGCTAATGTGAAC
AAATAGATGTATATGTATATGTGGTTAAGCGGAATAGGCTAATG
Found at i:31679 original size:36 final size:36
Alignment explanation
Indices: 31616--31774 Score: 193
Period size: 35 Copynumber: 4.5 Consensus size: 36
31606 CTGGGTAGGA
31616 CCGATGACTACGTGTGGAGATTATGTCCGGTAA-AC
1 CCGATGACTACGTGTGGAGATTATGTCCGGTAAGAC
* *
31651 CCAATGACTACGTGTTGGAGATTTTGTCCGTGTAAGAC
1 CCGATGACTACGTG-TGGAGATTATGTCCG-GTAAGAC
*
31689 CCGATGACTACGTGT-GAGATTATG-CCGGGAAGAC
1 CCGATGACTACGTGTGGAGATTATGTCCGGTAAGAC
* *
31723 CCGATGACTACATGTGGAGATTTTGTCCGGGT-AGA-
1 CCGATGACTACGTGTGGAGATTATGTCC-GGTAAGAC
* *
31758 CCGATAACTACGGGTGG
1 CCGATGACTACGTGTGG
31775 GGACTATTCG
Statistics
Matches: 107, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
34 20 0.19
35 38 0.36
36 27 0.25
37 7 0.07
38 15 0.14
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (36 bp):
CCGATGACTACGTGTGGAGATTATGTCCGGTAAGAC
Done.