genome.fa.s2843.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold765
Parameters: 2 7 7 80 10 50 1000
Length:  44580

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6322--6542	40	5.6	40	83	8	263	25	28	22	24	1.99
6324--6539	119	1.8	120	83	7	287	25	27	22	25	2.00
8871--8896	12	2.2	12	100	0	52	50	19	15	15	1.79
9589--10036	27	16.7	26	77	7	186	37	23	10	28	1.87
9589--9979	161	2.4	161	82	5	443	38	22	9	29	1.86
9589--10024	54	8.1	54	79	6	431	38	22	10	29	1.87
10017--10088	27	2.7	27	73	0	72	40	26	6	26	1.81
9589--10089	81	6.2	80	79	4	472	37	23	9	29	1.87
10096--10214	27	4.4	27	78	0	121	36	18	20	24	1.94
10073--10186	54	2.1	54	83	0	138	40	18	16	24	1.91
10103--10214	54	2.1	54	87	0	161	36	19	19	24	1.95
10642--10706	22	3.0	22	80	8	78	20	26	23	30	1.98
10865--10971	27	4.0	26	84	8	108	19	23	20	36	1.95
10865--10964	53	1.9	53	83	2	130	20	24	20	36	1.95
11089--11181	6	15.3	6	71	18	68	19	19	13	47	1.82
11092--11161	25	2.8	25	84	0	95	18	21	14	45	1.84
14750--14810	30	2.0	30	83	0	77	31	22	8	37	1.84
24958--25192	84	2.8	85	83	3	296	25	19	24	30	1.98
24961--25192	43	5.5	42	71	13	163	26	18	24	30	1.98
38780--38897	59	2.0	59	96	0	218	26	15	18	39	1.90
40121--40178	27	2.2	26	78	6	71	34	18	8	37	1.82
40134--40205	27	2.7	27	86	0	90	29	18	13	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40569--40618	18	2.8	18	84	0	64	24	20	12	44	1.85
41542--41646	27	3.8	27	80	10	106	35	21	23	19	1.96

Tables:   1

The End!