genome.fa.s2845.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold784
Parameters: 2 7 7 80 10 50 1000
Length:  40313

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6621--6758	27	5.1	26	82	10	170	18	24	23	34	1.96
6621--6758	54	2.6	54	92	2	224	18	24	23	34	1.96
6621--6776	81	1.9	80	82	8	192	19	24	21	33	1.97
7994--8036	21	2.0	21	100	0	86	46	18	4	30	1.69
14427--14602	40	4.5	40	86	7	220	25	23	28	22	1.99
14427--14602	79	2.2	79	84	8	218	25	23	28	22	1.99
23924--23965	20	2.2	19	87	12	59	16	21	4	57	1.58
26421--26480	27	2.3	26	82	2	66	35	18	23	23	1.96
26697--26782	27	3.2	27	83	6	111	37	9	23	30	1.86
26803--26928	27	4.7	27	74	15	100	29	9	23	37	1.87
26776--26928	54	2.8	55	75	6	152	29	9	22	37	1.87
26776--26928	27	5.7	26	72	15	89	29	9	22	37	1.87
29261--29319	27	2.2	27	87	6	84	37	8	23	30	1.85
29271--29386	27	4.3	27	75	10	94	31	7	19	40	1.80
29311--29465	27	5.8	27	76	11	113	29	9	21	40	1.83
29281--29465	54	3.5	53	77	6	167	31	8	21	38	1.83
31516--31575	27	2.3	26	82	2	66	38	20	20	21	1.94
31831--32006	54	3.3	53	75	12	173	30	11	18	39	1.87
31831--31912	27	3.0	27	71	18	80	26	13	19	40	1.89
33762--33813	27	1.9	27	96	0	95	13	25	32	28	1.93
33686--33907	103	2.2	104	90	3	351	18	19	30	31	1.96
33826--33977	71	2.1	72	90	1	234	23	17	28	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38845--38889	22	2.0	22	100	0	90	33	13	17	35	1.89

Tables:   1

The End!