Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold423

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11797
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36


Found at i:733 original size:22 final size:23

Alignment explanation


    Indices: 708--752  Score: 65
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        698 GTTTATTTTC

                                   
        708 TTAATTTAT-TAAATAATATATT
          1 TTAATTTATATAAATAATATATT

                         * *       
        730 TTAATTTATATAATTCATATATT
          1 TTAATTTATATAAATAATATATT

        753 ATTCGAATAC


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  22    9  0.45
  23   11  0.55

ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56


Consensus pattern (23 bp):   
TTAATTTATATAAATAATATATT
Done.