genome.fa.s2902.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1786
Parameters: 2 7 7 80 10 50 1000
Length:  41378

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42--118	39	1.9	41	84	10	106	25	23	23	27	2.00
41--171	40	3.3	39	76	11	104	23	25	26	23	2.00
3946--4151	48	4.3	48	81	15	248	31	8	29	31	1.87
6256--6327	28	2.6	27	82	10	83	25	16	33	25	1.96
6713--6866	39	3.9	39	84	8	181	24	23	27	24	2.00
10305--10616	47	6.6	47	95	2	565	31	8	29	30	1.87
10740--10817	36	2.1	37	88	2	113	24	17	33	24	1.97
17385--17436	18	2.9	18	81	13	54	51	15	11	21	1.74
17406--17519	6	18.3	6	68	20	65	48	14	16	21	1.81
17423--17490	25	2.7	25	88	0	100	47	14	19	19	1.83
17448--17519	31	2.3	32	95	2	128	50	13	15	20	1.78
17423--17508	25	3.2	25	73	17	73	46	13	18	20	1.83
17656--17757	27	3.8	26	83	5	105	37	18	22	21	1.94
17916--17980	22	3.0	22	82	8	87	35	23	21	20	1.96
18407--18754	27	12.9	27	89	0	475	24	24	20	30	1.99
18801--19141	27	12.7	27	78	6	158	31	8	19	40	1.82
18881--19141	54	4.8	54	86	2	357	32	8	18	40	1.80
18881--19141	27	9.7	27	82	5	305	32	8	18	40	1.80
21109--21176	25	2.7	25	83	0	82	45	13	19	22	1.84
21131--21205	6	12.0	6	71	18	55	49	14	16	20	1.80
21134--21205	31	2.3	32	95	2	128	50	13	15	20	1.78
21109--21194	25	3.2	25	73	17	73	45	13	18	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21342--21443	27	3.8	26	85	5	123	36	20	23	19	1.95
21602--21666	22	3.0	22	80	8	78	33	23	23	20	1.97
22093--22556	27	17.2	27	86	2	583	25	21	19	33	1.97
22576--22898	27	12.0	27	81	8	162	34	8	18	38	1.82
22637--22929	54	5.5	52	84	4	327	33	8	18	40	1.80
22662--22931	107	2.5	107	88	3	407	33	7	18	40	1.79
22637--22923	27	10.7	27	81	5	269	32	8	18	40	1.80
22589--22923	81	4.2	80	81	7	329	32	8	18	40	1.80
27399--27472	29	2.6	29	86	4	96	25	31	16	27	1.96
29204--29354	28	5.4	28	89	1	205	33	27	11	27	1.92
33470--33644	46	3.8	46	78	13	205	21	20	29	28	1.98

Tables:   1

The End!