genome.fa.s2906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold565
Parameters: 2 7 7 80 10 50 1000
Length:  47589

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181--946	43	18.1	43	78	6	742	16	32	33	17	1.93
203--975	85	9.2	84	78	6	642	16	31	33	17	1.93
298--975	256	2.7	256	88	2	980	16	32	33	17	1.93
175--771	299	2.0	299	91	2	968	17	31	32	17	1.93
875--953	34	2.3	34	93	2	131	7	35	37	18	1.80
952--1000	25	2.0	25	91	0	80	12	22	46	18	1.82
988--1080	42	2.2	44	90	3	145	12	27	39	19	1.88
8977--9268	42	6.9	42	80	9	319	17	28	34	19	1.95
9477--9555	24	3.3	24	85	5	106	6	37	35	20	1.78
13213--14171	85	11.3	86	81	3	886	16	32	32	17	1.93
13210--14136	171	5.4	169	78	6	621	16	32	32	18	1.93
13300--14200	256	3.5	253	84	4	1031	16	32	33	18	1.93
13229--13966	299	2.5	299	91	2	1162	16	32	32	18	1.93
14100--14178	34	2.3	34	93	2	131	7	35	37	18	1.80
14177--14225	25	2.0	25	91	0	80	12	22	46	18	1.82
14213--14305	42	2.2	44	90	3	145	12	27	39	19	1.88
22205--22496	42	6.9	42	80	9	319	17	28	34	19	1.95
22705--22783	24	3.3	24	85	5	106	6	37	35	20	1.78
22788--23799	43	23.9	43	78	6	1003	16	32	33	17	1.93
22788--23799	85	12.0	84	82	4	739	16	32	33	17	1.93
22801--23828	256	4.1	254	84	5	1058	16	32	33	17	1.93
22859--23594	299	2.5	299	92	1	1210	16	32	33	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23728--23806	34	2.3	34	93	2	131	7	35	37	18	1.80
23805--23853	25	2.0	25	91	0	80	12	22	46	18	1.82
23841--23933	42	2.2	44	90	3	145	12	27	39	19	1.88
31836--32127	42	6.9	42	80	9	319	17	28	34	19	1.95
32336--32414	24	3.3	24	85	5	106	6	37	35	20	1.78
32419--33430	43	23.9	43	78	6	1003	16	32	33	17	1.93
32419--33430	85	12.0	84	82	4	739	16	32	33	17	1.93
32432--33459	256	4.1	254	84	5	1058	16	32	33	17	1.93
32490--33225	299	2.5	299	92	1	1210	16	32	33	17	1.93
33359--33437	34	2.3	34	93	2	131	7	35	37	18	1.80
33436--33484	25	2.0	25	91	0	80	12	22	46	18	1.82
33472--33564	42	2.2	44	90	3	145	12	27	39	19	1.88
41476--41574	43	2.3	42	87	5	137	17	25	36	21	1.94
41462--41683	42	5.2	42	71	15	147	18	28	32	20	1.96

Tables:   1

The End!