Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2217
Parameters: 2 7 7 80 10 50 1000
Length:  161951

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3098--3128
12
2.5
13
94
5
55
22
6
22
48
1.73
8823--8866
22
2.0
22
95
0
79
25
36
4
34
1.76
11380--11422
20
2.2
20
86
0
59
53
2
30
13
1.53
13733--13776
22
2.0
22
95
0
79
25
36
4
34
1.76
16909--16952
11
3.7
12
90
9
72
77
6
2
13
1.07
16998--17063
28
2.3
28
87
7
89
77
3
7
12
1.09
16998--17063
27
2.3
29
84
7
82
77
3
7
12
1.09
16996--17066
29
2.4
30
81
13
94
76
2
9
11
1.13
25158--25234
30
2.6
30
77
4
84
29
25
16
27
1.97
33698--33741
22
2.0
22
95
0
79
25
36
4
34
1.76
41062--41109
20
2.4
20
71
0
51
31
16
29
22
1.96
42217--42256
19
2.1
19
85
0
53
25
35
17
22
1.95
43255--43302
15
3.3
15
73
5
53
31
0
25
43
1.55
46423--46478
30
1.9
28
85
7
76
12
30
3
53
1.55
47520--47554
11
3.1
11
84
8
52
17
2
8
71
1.23
47773--47820
15
3.3
15
73
5
53
31
0
25
43
1.55
51391--51473
30
2.7
30
81
9
89
12
21
1
65
1.33
51476--51506
12
2.6
12
94
0
53
25
12
16
45
1.83
51554--51610
5
11.0
5
75
20
55
3
17
1
77
1.00
51554--51610
16
3.7
14
82
15
60
3
17
1
77
1.00
51552--51621
20
3.3
20
73
18
63
4
18
1
75
1.04
52535--52573
11
3.7
10
90
10
60
15
2
7
74
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52522--52573
22
2.3
23
90
3
79
15
3
7
73
1.21
53997--54040
21
2.0
22
86
4
63
34
34
6
25
1.82
55826--55902
30
2.6
30
71
8
75
28
16
25
28
1.97
60471--60518
15
3.3
15
73
5
53
29
0
27
43
1.55
60465--60508
14
3.1
14
74
6
52
27
0
34
38
1.57
60465--60524
29
2.1
29
93
0
102
28
0
30
41
1.56
61506--61550
14
3.3
14
78
6
56
48
15
0
35
1.45
63726--63792
21
3.1
21
82
4
71
34
32
2
29
1.73
64109--64136
10
2.8
10
100
0
56
85
0
0
14
0.59
64090--64141
15
4.1
13
75
22
56
76
1
3
17
1.02
66264--66316
18
2.9
17
83
13
54
77
3
13
5
1.09
66285--66334
15
2.9
17
77
17
50
74
2
14
10
1.16
70565--70631
21
3.1
21
82
4
71
34
32
2
29
1.73
78192--78224
14
2.3
15
89
5
50
78
0
0
21
0.75
83366--83415
12
4.1
12
84
5
64
72
2
6
20
1.16
91947--92001
15
3.8
15
85
2
69
1
21
1
74
1.01
101620--101673
20
2.7
20
82
0
63
24
20
18
37
1.94
101620--101693
30
2.5
30
86
8
98
21
20
18
39
1.93
101620--101684
20
3.2
20
71
16
53
23
21
16
38
1.93
103318--103375
20
2.9
19
76
19
55
43
15
17
24
1.87
106711--106848
12
11.5
12
68
18
56
7
19
2
70
1.24
106691--106747
14
4.2
13
75
18
53
8
15
1
73
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106692--106749
15
4.1
15
70
18
52
8
17
1
72
1.18
106754--106812
18
3.3
18
75
0
64
5
13
6
74
1.19
106786--106816
11
2.7
11
95
5
53
0
12
6
80
0.89
106703--106816
6
18.5
6
66
13
54
6
16
4
72
1.21
109499--109563
20
3.3
19
73
16
51
38
16
21
23
1.93
110851--110905
15
3.8
14
80
7
65
74
1
21
1
1.01
130215--130275
31
2.0
31
100
0
122
39
18
3
39
1.67
134933--135019
30
2.9
30
89
0
129
28
12
22
35
1.91
138153--138334
37
4.9
37
91
0
274
25
32
18
23
1.97
138539--138826
47
6.1
47
89
0
425
27
28
11
32
1.91
138563--138827
141
1.9
141
97
0
503
27
28
11
32
1.91
138655--138727
22
3.2
22
66
17
58
28
24
10
35
1.90
154553--155280
356
2.0
359
91
2
1178
31
14
16
37
1.88
154916--161488
541
12.2
541
92
1
10762
33
11
18
37
1.86

Tables:   1

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