Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3338
Parameters: 2 7 7 80 10 50 1000
Length:  47620

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5480--5660
80
2.3
80
83
9
219
27
27
20
23
1.99
5477--5660
40
4.6
40
81
7
196
28
27
20
23
1.99
13278--13384
40
2.7
40
84
5
119
25
27
20
27
1.99
13284--13504
80
2.8
80
79
7
193
27
27
20
25
1.99
13324--13504
80
2.3
80
83
9
219
27
27
20
23
1.99
13321--13504
40
4.6
40
81
7
196
28
27
20
23
1.99
28855--28982
24
5.4
24
77
10
106
33
18
21
26
1.96
28855--28983
46
2.7
47
81
9
147
33
18
20
27
1.96
28868--28990
23
5.3
23
76
5
99
34
17
21
26
1.96
35204--35242
19
2.1
19
90
0
60
53
10
2
33
1.48
36561--36619
24
2.4
25
82
5
75
35
15
22
27
1.94
36626--36677
23
2.3
23
79
0
59
34
17
23
25
1.96
39524--39584
30
2.0
30
87
0
86
39
6
22
31
1.80
44705--44906
65
3.1
63
75
9
194
31
17
29
21
1.96

Tables:   1

The End!