Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2990
Parameters: 2 7 7 80 10 50 1000
Length:  34678

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10681--10718
18
2.2
18
90
9
62
52
5
5
36
1.47
11963--12027
30
2.2
30
91
2
105
9
1
47
41
1.45
11973--12027
15
3.7
15
100
0
110
7
0
49
43
1.30
11973--12027
7
7.4
7
76
11
56
7
0
49
43
1.30
11979--12021
8
5.6
8
78
10
54
4
0
48
46
1.22
15984--16017
17
2.0
17
100
0
68
41
17
11
29
1.85
16607--16992
45
8.6
45
81
4
465
11
18
28
41
1.85
16607--16992
90
4.3
90
96
0
691
11
18
28
41
1.85
17005--17095
45
2.0
45
100
0
182
27
10
30
30
1.91
19656--19695
20
2.0
20
85
0
53
62
5
0
32
1.17
19881--19916
3
12.0
3
87
0
54
66
0
2
30
1.06
20012--20066
22
2.5
23
85
8
71
56
7
3
32
1.44
20015--20084
3
23.3
3
71
11
54
60
5
2
31
1.35
20545--20582
18
2.1
18
90
0
58
50
0
50
0
1.00
20546--20578
11
2.9
12
91
8
52
48
0
51
0
1.00
21613--21847
75
3.2
75
90
1
359
31
20
17
29
1.96
21760--22168
173
2.3
177
80
6
458
35
17
17
29
1.93
22110--22264
86
1.8
83
81
4
193
40
18
15
25
1.89
22285--22859
74
7.8
73
84
8
682
33
20
16
29
1.95
22481--22841
73
4.9
73
89
4
530
31
21
17
30
1.96
22285--22855
145
3.9
147
85
6
767
32
20
16
29
1.95
22859--23031
68
2.5
70
85
4
219
32
21
14
31
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22661--23031
190
1.9
195
84
6
495
33
20
15
30
1.93
31260--31297
12
2.9
13
84
11
51
36
7
26
28
1.84

Tables:   1

The End!