Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1029
Parameters: 2 7 7 80 10 50 1000
Length:  106931

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4336--4396
30
2.0
30
100
0
122
27
19
19
32
1.96
5564--5608
21
2.1
21
84
8
56
17
22
20
40
1.92
22832--22894
16
3.4
18
73
16
58
65
1
1
31
1.12
22853--22895
21
2.1
20
82
4
50
69
2
2
25
1.12
22833--22903
10
7.5
10
75
15
62
64
1
1
32
1.11
24768--24810
17
2.5
17
92
0
68
79
2
4
13
1.00
26363--26463
41
2.5
41
90
1
168
36
13
25
23
1.92
37983--38012
15
2.0
15
93
0
51
56
6
6
30
1.51
38314--38628
24
13.2
24
76
3
242
33
36
9
20
1.85
38314--38628
72
4.4
71
82
4
323
33
36
9
20
1.85
50187--50223
19
1.9
19
89
10
58
40
2
2
54
1.29
56173--56278
53
2.0
53
98
0
203
38
5
19
35
1.76
56773--56799
13
2.1
13
100
0
54
55
7
22
14
1.64
57274--57320
24
2.0
24
91
0
76
55
4
2
38
1.31
58215--58258
21
2.1
21
91
0
70
11
9
29
50
1.69
58726--58793
31
2.2
31
84
7
86
26
11
16
45
1.81
62982--63148
45
3.9
44
80
6
175
20
19
28
31
1.97
62991--63107
43
2.6
45
85
4
148
23
19
29
28
1.98
62990--63189
84
2.3
89
77
10
211
22
19
29
29
1.98
64222--64255
14
2.4
14
85
5
50
41
0
14
44
1.45
78064--78384
48
6.7
46
77
9
236
27
19
28
24
1.99
78055--78387
96
3.4
96
78
8
275
27
19
28
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78055--78383
144
2.3
145
81
5
362
27
19
28
24
1.99
78928--78966
21
1.9
19
85
10
51
51
5
10
33
1.58
86832--86856
8
3.1
8
100
0
50
52
0
24
24
1.48
87220--87373
43
3.6
43
78
11
163
24
16
24
33
1.96
90405--90436
16
2.1
16
94
5
57
28
12
18
40
1.87
92711--92774
31
2.1
31
87
0
92
25
25
15
34
1.95
92968--93228
24
11.0
24
85
3
332
25
21
23
29
1.99
92989--93227
47
5.1
47
87
3
336
25
20
23
30
1.99
92968--93228
71
3.7
71
91
3
409
25
21
23
29
1.99
93278--93336
20
3.0
20
92
0
100
33
18
11
35
1.88
93381--93428
25
1.9
25
86
0
69
25
16
25
33
1.96
100938--101000
30
2.1
31
90
3
101
23
23
15
36
1.94
101193--101422
24
9.8
24
85
6
301
26
21
24
28
1.99
101207--101401
69
2.8
70
92
1
320
25
21
23
29
1.99
101193--101422
93
2.5
92
86
5
302
26
21
24
28
1.99
101476--101542
20
3.3
20
93
0
116
32
20
11
34
1.90
101476--101531
11
5.5
11
71
16
57
32
19
12
35
1.89

Tables:   1

The End!