genome.fa.s293.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1236
Parameters: 2 7 7 80 10 50 1000
Length:  102558

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2356--2449	26	3.6	26	88	7	136	30	5	26	37	1.79
2356--2453	27	3.7	27	84	13	114	30	6	25	37	1.80
6118--6224	26	4.2	26	93	1	189	35	24	7	32	1.83
11509--11561	26	2.0	26	82	7	63	24	15	20	39	1.91
13055--13136	26	3.2	26	96	0	155	34	26	8	30	1.86
15494--15536	22	2.0	23	81	9	54	23	11	6	58	1.57
17302--17332	15	2.1	14	94	5	53	35	16	9	38	1.81
19156--19199	17	2.4	19	74	18	56	40	20	11	27	1.86
19164--19199	17	2.1	17	94	0	63	47	16	11	25	1.79
21206--21233	6	4.7	6	100	0	56	53	0	0	46	1.00
21917--21955	18	2.2	18	85	0	51	35	0	33	30	1.58
22876--22913	19	2.1	18	95	5	67	63	0	0	36	0.95
22871--22914	13	3.2	14	84	15	65	61	0	0	38	0.96
28725--28760	18	1.9	19	88	5	56	33	2	2	61	1.25
32857--32890	14	2.4	15	85	14	54	55	11	5	26	1.58
34306--34348	21	2.0	20	86	8	59	34	2	0	62	1.08
34452--34515	23	2.8	24	82	15	66	23	6	4	65	1.35
34512--34553	14	2.9	14	80	19	50	33	0	4	61	1.17
43938--43987	8	6.1	8	79	4	55	12	4	4	80	1.00
52216--52245	7	4.3	7	100	0	60	60	13	0	26	1.34
52689--52739	25	2.1	24	86	13	70	47	0	9	43	1.36
57040--57406	43	8.6	43	87	1	468	30	28	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57040--57406	128	2.9	128	85	1	466	30	28	17	24	1.97
57679--57716	18	2.2	18	85	4	51	71	2	0	26	1.00
59173--59584	48	8.7	47	72	14	218	27	17	29	24	1.98
63334--63511	46	3.7	45	71	20	146	20	20	28	30	1.98
70068--70129	32	1.9	32	81	12	74	22	24	24	29	1.99
70807--70849	22	2.0	22	95	0	77	30	16	32	20	1.95
74577--74672	40	2.4	40	89	1	140	21	18	27	32	1.97
77347--77451	43	2.5	42	78	4	111	27	10	24	37	1.88
81180--81423	27	9.2	26	76	4	227	39	20	9	30	1.85
81184--81424	53	4.5	54	84	3	290	40	18	9	31	1.84
81180--81425	80	3.1	79	76	7	237	39	19	10	30	1.85
81403--81488	27	3.2	27	90	3	129	39	19	17	23	1.92
81403--81475	26	2.8	26	93	2	119	38	21	17	21	1.93
81633--81727	27	3.6	27	78	2	84	18	21	23	36	1.95
87592--88141	47	11.6	47	91	3	870	33	8	29	29	1.87
87592--88147	96	5.9	96	94	1	899	33	8	28	28	1.88
91057--91303	27	8.8	26	69	15	102	38	19	10	31	1.85
97470--98026	49	11.7	49	82	12	671	33	8	28	29	1.86
97470--98026	142	3.9	142	82	12	669	33	8	28	29	1.86
97470--98026	238	2.3	237	83	10	697	33	8	28	29	1.86
99941--99965	13	1.9	13	100	0	50	8	8	32	52	1.60
100307--100660	41	8.8	39	75	15	226	24	20	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100308--100544	76	2.9	80	81	13	238	24	21	29	24	1.99
101159--101277	44	2.9	40	79	15	127	26	29	17	26	1.98
101159--101320	43	3.9	40	78	15	136	25	30	18	25	1.98
101369--101454	45	1.9	46	90	4	140	25	30	17	26	1.97

Tables:   1

The End!