Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold550
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38331
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Found at i:6837 original size:27 final size:27
Alignment explanation
Indices: 6807--6929 Score: 147
Period size: 27 Copynumber: 4.5 Consensus size: 27
6797 ATATTGAGTC
* *
6807 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
6834 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
6861 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
6889 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
6916 CGCACACTTAGTGC
1 CGCACACTTAGTGC
6930 ATCATTCATT
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 61 0.73
28 23 0.27
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:6899 original size:55 final size:54
Alignment explanation
Indices: 6807--6929 Score: 156
Period size: 55 Copynumber: 2.3 Consensus size: 54
6797 ATATTGAGTC
* * * *
6807 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
* * ** *
6861 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCCACATAATCAAAT
6916 CGCACACTTAGTGC
1 CGCACACTTAGTGC
6930 ATCATTCATT
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
54 20 0.34
55 39 0.66
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
Found at i:6948 original size:25 final size:26
Alignment explanation
Indices: 6828--6949 Score: 97
Period size: 27 Copynumber: 4.6 Consensus size: 26
6818 TGCTATATAA
* * *
6828 TCAACTCGCACACTTAGTGCTA-CGTAA
1 TCAATTCGCACACTTAGTGC-AGCAT-G
*
6855 TCAAATCGCACACTTAGTGCTA-CATAG
1 TCAATTCGCACACTTAGTGC-AGCAT-G
* *
6882 TCAAACTCGCACACTTAGTGCCGCATGG
1 TC-AATTCGCACACTTAGTGCAGCAT-G
*
6910 TCAATTCGCACACTTAGTGCATCAT-
1 TCAATTCGCACACTTAGTGCAGCATG
*
6935 TCATTTCGCACACTT
1 TCAATTCGCACACTT
6950 CATTTCGCAC
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
25 14 0.17
27 46 0.55
28 23 0.28
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (26 bp):
TCAATTCGCACACTTAGTGCAGCATG
Found at i:6953 original size:14 final size:14
Alignment explanation
Indices: 6934--6963 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6924 TAGTGCATCA
6934 TTCATTTCGCACAC
1 TTCATTTCGCACAC
6948 TTCATTTCGCACAC
1 TTCATTTCGCACAC
6962 TT
1 TT
6964 AGTGCAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.33, G:0.07, T:0.40
Consensus pattern (14 bp):
TTCATTTCGCACAC
Found at i:9381 original size:8 final size:9
Alignment explanation
Indices: 9349--9382 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
9339 CTTAGGCCAT
9349 AATGGGCCG
1 AATGGGCCG
9358 AATGGGCCG
1 AATGGGCCG
9367 AATGGGCCG
1 AATGGGCCG
9376 -ATGGGCC
1 AATGGGCC
9383 CATGGGCCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.28
9 18 0.72
ACGTcount: A:0.21, C:0.24, G:0.44, T:0.12
Consensus pattern (9 bp):
AATGGGCCG
Found at i:17844 original size:30 final size:30
Alignment explanation
Indices: 17808--17865 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
17798 TATAATTTCA
* *
17808 TTTTATTTTTATTTTAATTTGGTCCTAACC
1 TTTTATTTTTATTTCAATTTAGTCCTAACC
*
17838 TTTTATTTTTGTTTCAATTTAGTCCTAA
1 TTTTATTTTTATTTCAATTTAGTCCTAA
17866 TGGCTATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.21, C:0.12, G:0.07, T:0.60
Consensus pattern (30 bp):
TTTTATTTTTATTTCAATTTAGTCCTAACC
Found at i:18052 original size:15 final size:15
Alignment explanation
Indices: 18028--18080 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
18018 ATCCTTTTTA
*
18028 AATTTTTTTATATAT
1 AATTTATTTATATAT
* *
18043 AATTTATTTATTTAA
1 AATTTATTTATATAT
*
18058 AATGT-TTTATATAT
1 AATTTATTTATATAT
*
18072 CATTTATTT
1 AATTTATTT
18081 TTATTATAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
14 10 0.34
15 19 0.66
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (15 bp):
AATTTATTTATATAT
Found at i:18085 original size:31 final size:29
Alignment explanation
Indices: 18024--18080 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
18014 TTTAATCCTT
* *
18024 TTTAAATTTTTTTATATATAATTTATTTA
1 TTTAAAATGTTTTATATATAATTTATTTA
*
18053 TTTAAAATGTTTTATATATCATTTATTT
1 TTTAAAATGTTTTATATATAATTTATTT
18081 TTATTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (29 bp):
TTTAAAATGTTTTATATATAATTTATTTA
Found at i:18124 original size:18 final size:19
Alignment explanation
Indices: 18082--18124 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
18072 CATTTATTTT
*
18082 TATTATAAACATTATTTATA
1 TATT-TAAAAATTATTTATA
*
18102 CATTTAAAAATTA-TTATA
1 TATTTAAAAATTATTTATA
18120 TATTT
1 TATTT
18125 TTTTATTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 9 0.45
19 8 0.40
20 3 0.15
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTTAAAAATTATTTATA
Found at i:18139 original size:16 final size:19
Alignment explanation
Indices: 18113--18153 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 19
18103 ATTTAAAAAT
18113 TATTATATATT-TTT-TTA
1 TATTATATATTATTTGTTA
*
18130 T-TTATGTATTATTTGTTA
1 TATTATATATTATTTGTTA
18148 TATTAT
1 TATTAT
18154 TTACATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 8 0.40
17 4 0.20
18 4 0.20
19 4 0.20
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (19 bp):
TATTATATATTATTTGTTA
Found at i:18153 original size:19 final size:17
Alignment explanation
Indices: 18113--18218 Score: 50
Period size: 18 Copynumber: 6.5 Consensus size: 17
18103 ATTTAAAAAT
18113 TATTATATATTTTTTTA
1 TATTATATATTTTTTTA
*
18130 T-TTATGTATTATTTGTTA
1 TATTATATATT-TTT-TTA
***
18148 TATTAT-T-TACATTT-
1 TATTATATATTTTTTTA
18162 TATTATATA---TTTTA
1 TATTATATATTTTTTTA
18176 T-TTATATATTTTGTTATA
1 TATTATATATTTT-TT-TA
* *
18194 TATTAAATCATTTTATTA
1 TATTATAT-ATTTTTTTA
18212 TA-TATAT
1 TATTATAT
18219 TATTCATTTC
Statistics
Matches: 68, Mismatches: 8, Indels: 26
0.67 0.08 0.25
Matches are distributed among these distances:
13 10 0.15
14 7 0.10
15 3 0.04
16 10 0.15
17 11 0.16
18 12 0.18
19 10 0.15
20 5 0.07
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (17 bp):
TATTATATATTTTTTTA
Found at i:18173 original size:12 final size:12
Alignment explanation
Indices: 18112--18197 Score: 68
Period size: 12 Copynumber: 7.0 Consensus size: 12
18102 CATTTAAAAA
18112 TTATTATATATT
1 TTATTATATATT
* *
18124 TTTTTATTTATGT
1 TTATTATATAT-T
* *
18137 ATTATT-TGTTATA
1 -TTATTAT-ATATT
*
18150 TTATT-TACATT
1 TTATTATATATT
18161 TTATTATATATT
1 TTATTATATATT
18173 TTATTTATATATT
1 TTA-TTATATATT
*
18186 TTGTTATATATT
1 TTATTATATATT
18198 AAATCATTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
11 7 0.12
12 32 0.53
13 13 0.22
14 8 0.13
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (12 bp):
TTATTATATATT
Found at i:18222 original size:25 final size:24
Alignment explanation
Indices: 18146--18222 Score: 67
Period size: 23 Copynumber: 3.4 Consensus size: 24
18136 TATTATTTGT
*
18146 TATATTATTTA-CATTTTATTATA
1 TATATTATTAATCATTTTATTATA
* *
18169 TATTTTATTTATAT-ATTTT-GT-TA
1 TATATTA-TTA-ATCATTTTATTATA
18192 TATATTA--AATCATTTTATTATA
1 TATATTATTAATCATTTTATTATA
18214 TATATTATT
1 TATATTATT
18223 CATTTCTTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 15
0.67 0.08 0.25
Matches are distributed among these distances:
19 2 0.05
20 6 0.15
21 1 0.02
22 9 0.22
23 14 0.34
24 3 0.07
25 6 0.15
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (24 bp):
TATATTATTAATCATTTTATTATA
Found at i:18238 original size:28 final size:30
Alignment explanation
Indices: 18203--18275 Score: 82
Period size: 28 Copynumber: 2.5 Consensus size: 30
18193 ATATTAAATC
*
18203 ATTTTATTATATATATTAT-TCAT-TTCTT
1 ATTTTATTATATATATTATGTCATCTTATT
*
18231 ATTTTATTATA-A-ATTATGTTATCTTATT
1 ATTTTATTATATATATTATGTCATCTTATT
18259 ATTTATTATTATATATA
1 A-TT-TTATTATATATA
18276 ATTTTAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
26 5 0.14
27 4 0.11
28 16 0.43
29 2 0.05
30 8 0.22
31 1 0.03
32 1 0.03
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (30 bp):
ATTTTATTATATATATTATGTCATCTTATT
Found at i:18266 original size:20 final size:20
Alignment explanation
Indices: 18216--18267 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
18206 TTATTATATA
* *
18216 TATTATTCATT-TCTTATTT
1 TATTATTAATTATCTTATCT
* *
18235 TATTATAAATTATGTTATCT
1 TATTATTAATTATCTTATCT
*
18255 TATTATTTATTAT
1 TATTATTAATTAT
18268 TATATATAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (20 bp):
TATTATTAATTATCTTATCT
Found at i:30266 original size:45 final size:45
Alignment explanation
Indices: 30175--30276 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 45
30165 GTAGATCACT
*
30175 GATAG-CAGATTTGGCATCTCTGTATTGACAGGGAACAAATCAAA
1 GATAGACAGATTTGGCATCTCTATATTGACAGGGAACAAATCAAA
* * **
30219 GAT-GACAGATTTGGCATCTCTATATTAGACAGGGACCAGATTGAA
1 GATAGACAGATTTGGCATCTCTATATT-GACAGGGAACAAATCAAA
30264 GATAGA-AGATTTG
1 GATAGACAGATTTG
30277 ACATTCGTGT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 23 0.46
45 24 0.48
46 2 0.04
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (45 bp):
GATAGACAGATTTGGCATCTCTATATTGACAGGGAACAAATCAAA
Found at i:30393 original size:45 final size:44
Alignment explanation
Indices: 30343--30768 Score: 282
Period size: 45 Copynumber: 9.5 Consensus size: 44
30333 TTAGACGGGG
30343 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * *
30388 AGCAGATCGAAGAT-GACAGATTTGGCGTCTCTGT-ATTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCTGTGTTTACATC--GA
*
30433 AGCAGATCGAAGATAGCAGATCTGACATTCATGTGTTTATATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * * *
30478 AGCAGATCGAAGAT-GATAGATTTGGCGTCTCTGT-ATTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCTGTGTTTACATC--GA
* *
30523 AGCAGATCGGAGATAGTAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * *
30568 AGCAGATCGAAGAT-GACAGATTTGGCGTCTCTGT-ATTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCTGTGTTTACATC--GA
* *
30613 AGCAGATCCAAGATAGCAGATCTGACATTCGTGTGTTTACATTGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * * *
30658 AGCAGATCGAAGAT-GACATATTTGGCGTCTCTGT-ATTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCTGTGTTTACATC--GA
*
30703 AGCAGATCGAAGATAGCATATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
*
30748 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAGCAGAT
30769 TTGGCGTCTC
Statistics
Matches: 290, Mismatches: 59, Indels: 64
0.70 0.14 0.15
Matches are distributed among these distances:
43 3 0.01
44 28 0.10
45 228 0.79
46 28 0.10
47 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (44 bp):
AGCAGATCGAAGATAGCAGATCTGACATTCTGTGTTTACATCGA
Found at i:30807 original size:90 final size:90
Alignment explanation
Indices: 30217--30794 Score: 933
Period size: 90 Copynumber: 6.4 Consensus size: 90
30207 GAACAAATCA
* * * * * * *
30217 AAGATGACAGATTTGGCATCTCTATATTAGACAGGGACCAGATTGAAGATAGAAGATTTGACATT
1 AAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATT
* *
30282 CGTGTGTTTACATCGAAGAAAATCG
66 CGTGTGTTTACATCGAAGCAGATCG
* *
30307 AAAATGACAGGTTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATT
1 AAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATT
30372 CGTGTGTTTACATCGAAGCAGATCG
66 CGTGTGTTTACATCGAAGCAGATCG
30397 AAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATT
1 AAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATT
* *
30462 CATGTGTTTATATCGAAGCAGATCG
66 CGTGTGTTTACATCGAAGCAGATCG
* * *
30487 AAGATGATAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGGAGATAGTAGATCTGACATT
1 AAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATT
30552 CGTGTGTTTACATCGAAGCAGATCG
66 CGTGTGTTTACATCGAAGCAGATCG
*
30577 AAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCCAAGATAGCAGATCTGACATT
1 AAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATT
*
30642 CGTGTGTTTACATTGAAGCAGATCG
66 CGTGTGTTTACATCGAAGCAGATCG
* *
30667 AAGATGACATATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCATATCTGACATT
1 AAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATT
*
30732 CGTGTGTTTACATCGAAGCAGATCA
66 CGTGTGTTTACATCGAAGCAGATCG
* *
30757 AAGAT-AGCAGATTTGGCGTCTCTATATTTGACGGGGAG
1 AAGATGA-CAGATTTGGCGTCTCTGTATTAGACGGGGAG
30795 TAGCTCAAAG
Statistics
Matches: 454, Mismatches: 33, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
89 1 0.00
90 453 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (90 bp):
AAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATT
CGTGTGTTTACATCGAAGCAGATCG
Found at i:32944 original size:79 final size:80
Alignment explanation
Indices: 32841--33063 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 80
32831 GCTCCTCGTT
*
32841 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
32906 ATTTA-TAACTCGCA
66 AATTAGTAACTCGCA
* * *
32920 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTT-AGCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
32982 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * * *
32998 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC
33061 GGA
64 GGA
33064 CATCATTCAA
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
77 13 0.11
78 44 0.36
79 58 0.48
80 7 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:33063 original size:40 final size:40
Alignment explanation
Indices: 32841--33063 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
32831 GCTCCTCGTT
* *
32841 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32881 CAAATGCCTTCGGGACTTAACCCGGATTTA-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32920 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32960 CCAATGCCTTCGGG-CTTAG-CCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
32998 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
33039 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33064 CATCATTCAA
Statistics
Matches: 161, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
37 2 0.01
38 26 0.16
39 48 0.30
40 73 0.45
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Done.