genome.fa.s294.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold997
Parameters: 2 7 7 80 10 50 1000
Length:  101379

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--119	40	3.1	38	82	9	116	27	26	21	25	1.99
44--136	38	2.3	40	82	12	111	24	27	21	25	1.99
7129--7297	39	4.3	38	83	9	132	27	27	20	24	1.99
7150--7297	39	3.8	39	82	12	155	25	29	21	23	1.99
14373--14550	40	4.6	38	80	12	166	26	28	21	24	1.99
22279--22348	27	2.6	27	95	2	113	31	28	12	27	1.93
22279--22376	28	3.5	28	90	2	135	31	28	13	26	1.94
30358--30427	27	2.6	27	95	2	113	31	28	12	27	1.93
30358--30455	28	3.5	28	90	2	135	31	28	13	26	1.94
32330--32438	40	2.7	40	83	5	114	30	27	15	26	1.96
35717--35880	40	4.1	40	93	3	269	22	23	28	25	1.99
49172--49230	10	5.9	10	87	0	91	20	10	0	69	1.17
49945--49973	6	4.8	6	100	0	58	17	0	0	82	0.66
50432--50464	15	2.1	17	88	11	52	42	6	21	30	1.77
52427--52488	24	2.5	26	77	15	69	58	4	1	35	1.29
52721--52759	17	2.3	17	86	0	51	2	20	7	69	1.26
52773--52808	18	2.0	18	94	0	63	0	63	0	36	0.94
52774--52811	12	3.1	12	92	3	58	0	57	0	42	0.98
52774--52808	6	5.7	6	89	3	52	0	62	0	37	0.95
53128--53181	19	3.0	17	89	8	63	37	1	1	59	1.19
53128--53181	18	2.9	19	86	8	67	37	1	1	59	1.19
53344--53399	21	2.7	21	88	0	76	28	33	7	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53748--53800	16	2.9	18	81	10	56	64	0	0	35	0.94
61384--61501	61	1.9	60	86	6	166	37	25	18	18	1.94
62650--62717	17	3.8	16	71	25	55	45	22	1	30	1.61
62644--62860	39	5.6	39	91	4	323	45	21	2	30	1.66
63600--63667	32	2.2	31	84	5	84	64	1	5	27	1.25
64012--64087	10	7.9	10	81	8	61	32	1	2	63	1.17
64022--64073	9	5.7	9	88	6	61	26	0	1	71	0.97
64261--64427	83	2.0	83	83	6	214	43	6	8	40	1.62
65373--65440	16	4.2	16	96	0	127	26	0	35	38	1.57
65656--65710	15	3.4	16	80	16	53	50	1	0	47	1.11
65676--65710	18	2.0	17	88	5	52	54	0	0	45	0.99
65796--65830	18	2.0	17	88	5	52	54	0	0	45	0.99
65691--65881	61	3.2	60	67	20	155	48	5	2	43	1.38
65654--65937	120	2.4	120	90	2	446	48	4	1	44	1.34
67846--67882	19	1.9	19	94	0	65	29	18	18	32	1.96
74963--74987	13	1.9	13	100	0	50	48	0	12	40	1.40
79027--79158	57	2.5	56	80	9	152	47	4	3	43	1.41
80467--80625	50	3.1	50	77	9	164	33	15	11	38	1.83
81197--81252	27	2.1	27	100	0	112	32	7	10	50	1.64
82037--82233	53	3.7	53	86	6	256	24	20	16	38	1.93
82037--82233	107	1.8	107	83	6	265	24	20	16	38	1.93
86547--86589	19	2.1	19	83	12	50	46	16	0	37	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87453--87486	17	2.0	17	94	0	59	17	14	41	26	1.88
89185--89344	43	3.7	42	81	5	169	23	18	26	32	1.97
89185--89350	85	1.9	85	82	8	203	22	18	25	33	1.97
96817--96900	27	3.2	26	89	5	114	35	22	23	17	1.95
98443--98626	79	2.3	81	83	8	227	25	27	22	24	2.00
98424--98626	39	5.1	40	81	9	229	24	27	22	25	2.00

Tables:   1

The End!