Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2789
Parameters: 2 7 7 80 10 50 1000
Length:  86403

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114--160
20
2.3
20
81
0
58
29
34
12
23
1.92
1617--1692
20
3.6
21
78
15
68
78
3
11
5
1.04
1635--1698
20
3.1
21
78
14
80
79
1
14
4
0.96
8613--8656
22
2.0
22
95
0
79
34
4
36
25
1.76
14479--14549
15
4.8
15
82
1
81
73
2
5
18
1.16
14585--14610
13
2.0
13
100
0
52
84
0
15
0
0.62
14589--14664
34
2.3
32
88
6
116
77
3
9
9
1.10
15551--15596
20
2.2
20
84
3
56
65
0
26
8
1.21
15603--15638
12
3.0
12
87
0
54
33
0
25
41
1.55
25413--25519
56
1.9
56
86
3
153
25
21
13
40
1.89
26112--26166
20
2.8
20
88
0
83
29
16
29
25
1.97
31848--31948
30
3.4
30
69
4
87
26
26
14
31
1.95
33551--33607
12
4.7
12
83
12
71
71
7
5
15
1.25
33550--33607
25
2.4
24
83
13
82
70
6
5
17
1.28
37508--37573
33
2.0
34
85
8
91
31
16
24
27
1.96
39528--39582
14
3.5
15
79
15
67
78
3
3
14
1.03
39528--39582
17
3.4
16
82
7
76
78
3
3
14
1.03
39528--39582
16
3.4
16
82
2
74
78
3
3
14
1.03
39620--39697
31
2.4
32
87
6
113
74
2
11
11
1.17
39620--39697
32
2.5
31
85
10
104
74
2
11
11
1.17
39660--39698
20
1.9
20
84
5
51
82
2
7
7
0.94
39660--39699
21
1.9
21
84
0
53
82
2
7
7
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40587--40645
21
2.8
21
87
5
75
71
0
22
6
1.09
40598--40645
15
3.3
14
82
5
60
77
0
18
4
0.93
46862--46914
23
2.4
22
76
20
56
9
18
1
69
1.25
49303--49349
20
2.3
20
85
0
67
21
12
36
29
1.91
51020--51125
48
2.2
48
85
9
137
14
24
1
59
1.45
52205--52229
11
2.3
11
100
0
50
16
0
8
76
1.02
53739--53785
20
2.3
20
85
0
67
21
12
36
29
1.91
56229--56303
11
7.0
10
71
28
57
76
1
17
5
1.05
56224--56303
21
3.7
21
75
19
76
76
2
16
5
1.07
56229--56303
6
14.0
5
78
20
57
76
1
17
5
1.05
56229--56303
10
6.5
11
73
20
64
76
1
17
5
1.05
56233--56301
18
3.8
17
80
16
68
76
1
15
5
1.04
56372--56396
12
2.1
12
100
0
50
76
0
16
8
1.02
56372--56451
29
2.7
30
73
11
83
66
1
21
11
1.30
58175--58221
20
2.3
20
81
0
58
29
34
12
23
1.92
62555--62600
19
2.3
20
81
3
58
30
34
13
21
1.91
66453--66501
18
2.8
18
84
3
64
57
0
28
14
1.38
73809--73840
15
2.0
17
88
11
50
9
18
3
68
1.30
78649--78703
19
2.9
18
86
7
74
72
1
16
9
1.18
78774--78859
33
2.5
33
79
9
84
66
2
19
11
1.34
83533--83565
16
2.1
16
88
11
50
63
0
27
9
1.24
85174--85220
20
2.3
20
81
0
58
29
34
12
23
1.92

Tables:   1

The End!