genome.fa.s2964.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2995
Parameters: 2 7 7 80 10 50 1000
Length:  46901

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2490--2716	38	6.0	38	85	8	286	23	21	29	25	1.99
2490--2728	78	3.1	79	86	7	316	23	21	29	25	1.99
10706--10936	40	5.8	39	87	4	295	21	22	29	25	1.99
10707--10936	120	1.9	119	88	4	347	21	22	29	26	1.99
13147--13353	40	5.2	40	91	4	314	23	22	27	26	2.00
16383--16578	42	4.7	40	83	6	205	30	14	24	30	1.95
16376--16578	85	2.4	82	82	6	255	31	14	24	30	1.94
17648--17682	18	2.0	17	88	5	52	31	0	25	42	1.55
23837--23862	13	2.0	13	100	0	52	15	0	15	69	1.20
25435--25468	17	2.0	17	100	0	68	41	0	5	52	1.25
25826--26008	41	4.5	41	88	2	129	39	21	21	17	1.92
25856--26034	41	4.4	41	90	2	247	37	21	22	17	1.94
26191--26288	7	13.4	7	70	8	52	27	1	25	45	1.60
26191--26288	14	6.7	14	72	9	70	27	1	25	45	1.60
26202--26283	21	3.7	21	76	12	92	26	1	28	43	1.62
26206--26299	46	2.0	46	97	0	179	28	2	26	42	1.67
28277--28347	32	2.5	27	76	22	81	19	14	9	56	1.66
32396--32436	19	2.2	19	86	4	57	21	2	4	70	1.18
33887--33920	10	3.4	10	87	0	50	55	5	0	38	1.24
38414--38523	26	4.2	26	97	0	184	33	5	24	36	1.79
40007--40059	26	2.0	26	85	7	72	37	22	15	24	1.92
44167--44272	26	4.2	26	93	4	175	34	5	23	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45751--45802	25	2.0	26	85	3	70	38	23	13	25	1.91

Tables:   1

The End!