genome.fa.s297.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3534
Parameters: 2 7 7 80 10 50 1000
Length:  86058

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12255--12375	37	3.3	38	77	16	112	24	21	26	27	1.99
12343--12416	37	2.0	38	86	7	107	28	18	27	25	1.98
19970--20153	40	4.6	40	82	6	196	23	20	27	28	1.99
19970--20150	80	2.3	81	83	9	221	23	20	27	27	1.99
20038--20200	40	4.1	39	82	7	141	26	20	26	26	1.99
26017--26075	24	2.6	24	84	7	79	37	16	16	28	1.92
27459--27510	17	3.1	17	80	8	61	46	15	7	30	1.74
28359--28452	27	3.2	28	80	11	100	46	18	4	30	1.68
30632--30739	26	4.2	26	89	0	171	33	6	23	37	1.80
37563--37670	26	4.2	26	91	0	180	33	7	23	36	1.83
40326--40366	20	2.0	20	95	0	73	34	7	29	29	1.84
42830--42896	32	2.1	31	83	8	82	38	5	0	55	1.25
45241--45311	25	2.6	26	82	10	81	63	15	8	12	1.51
45254--45311	29	1.9	31	86	10	84	65	13	10	10	1.47
54816--54925	56	2.0	56	85	0	148	30	12	12	44	1.80
59248--59286	19	2.1	19	100	0	78	46	0	10	43	1.37
60270--60345	38	2.0	38	97	0	143	40	5	15	38	1.70
62131--62155	13	1.9	13	100	0	50	20	40	24	16	1.91
77377--77570	47	4.1	47	89	0	280	32	10	29	26	1.90
77540--77818	48	5.8	48	91	3	463	35	6	26	31	1.82
77540--77858	144	2.2	143	86	5	387	34	7	26	30	1.85
77967--78078	37	3.0	37	93	0	188	22	16	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79364--79392	15	1.9	15	100	0	58	31	20	27	20	1.98
79379--79736	40	9.2	40	90	5	558	24	22	27	25	2.00
79379--79736	77	4.6	77	90	7	557	24	22	27	25	2.00
80863--80892	13	2.3	13	100	0	60	33	6	23	36	1.81
83776--83969	47	4.1	47	88	0	271	33	11	28	26	1.91
83805--83876	22	3.1	22	64	24	58	33	13	29	23	1.93
83776--84017	94	2.6	94	79	3	281	33	10	28	27	1.89
83940--84123	98	1.9	96	92	4	307	35	6	26	30	1.82
83939--84123	48	3.8	48	89	5	300	35	6	26	31	1.82
84269--84377	37	2.9	37	93	0	173	23	19	29	27	1.98
85362--85423	31	2.0	31	90	0	97	20	8	25	45	1.79

Tables:   1

The End!