Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2029
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36857
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Found at i:3570 original size:40 final size:41
Alignment explanation
Indices: 3481--3599 Score: 149
Period size: 40 Copynumber: 3.0 Consensus size: 41
3471 TTTTTTCATT
*
3481 GTGCGAGTTACTAATTCCGGGCTAAG-CCCGAA-GCA-TTG
1 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
* *
3519 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTT
1 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
* *
3560 TTGCGA-TTACTATAA-CCGGGCTATGTCCCGAAGGCATTTG
1 GTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTG
3600 AACGAGTAGC
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
38 24 0.34
39 6 0.09
40 31 0.44
41 9 0.13
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (41 bp):
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
Found at i:7750 original size:7 final size:7
Alignment explanation
Indices: 7740--7770 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
7730 AATGATGAAT
7740 GATGAGG
1 GATGAGG
7747 GATGAGG
1 GATGAGG
7754 GATGAGG
1 GATGAGG
7761 GATGAGG
1 GATGAGG
7768 GAT
1 GAT
7771 AAGTGAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.55, T:0.16
Consensus pattern (7 bp):
GATGAGG
Found at i:10683 original size:12 final size:12
Alignment explanation
Indices: 10666--10690 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10656 AATAATGCAA
10666 TGTTGTATCATG
1 TGTTGTATCATG
10678 TGTTGTATCATG
1 TGTTGTATCATG
10690 T
1 T
10691 CTTAATGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.52
Consensus pattern (12 bp):
TGTTGTATCATG
Found at i:16463 original size:43 final size:43
Alignment explanation
Indices: 16397--16566 Score: 170
Period size: 43 Copynumber: 4.0 Consensus size: 43
16387 AGCTCATACA
* * * *
16397 ATGCCAATGTCTCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATCAAATATCG
* **
16440 ATGCCACTATCCCAGACAGGGTCTTACACAAAATCAAATA-CG
1 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATCAAATATCG
* * *
16482 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAAAT-T-G
1 ATGCCACTGTCCCAGACAGGGTCTTACATG-AA-ATCAAATATCG
*
16525 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATCACATATC
1 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGAAATCAAATATC
16567 AGAAATCCTA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
41 5 0.05
42 30 0.29
43 61 0.59
44 7 0.07
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACAGGGTCTTACATGAAATCAAATATCG
Found at i:16540 original size:85 final size:85
Alignment explanation
Indices: 16392--16552 Score: 231
Period size: 85 Copynumber: 1.9 Consensus size: 85
16382 CGAGAAGCTC
*
16392 ATACAATGCCAATGTCTCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGAC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGAC
16457 AG-GGTCTTACACAAAATCAA
66 -GTGGTCTTACACAAAATCAA
* *
16477 ATACGATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAAAT-T-GATGCCAAC-GTCCCA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAA--TCAAATATCGATGCC-ACTATCCCA
16539 GACGTGGTCTTACA
63 GACGTGGTCTTACA
16553 TGAAATCACA
Statistics
Matches: 69, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
84 1 0.01
85 59 0.86
86 3 0.04
87 6 0.09
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (85 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGAC
GTGGTCTTACACAAAATCAA
Found at i:18249 original size:27 final size:26
Alignment explanation
Indices: 18216--18276 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
18206 CCCCAGTTGC
*
18216 AAAATTACCAAAGTACCCCCGATTTAT
1 AAAATTACCAAAATACCCCCGA-TTAT
* ** *
18243 AAAATTACTAAAATACCGTCGATTGT
1 AAAATTACCAAAATACCCCCGATTAT
18269 AAAATTAC
1 AAAATTAC
18277 TGAAATGCCC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 11 0.38
27 18 0.62
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCCCGATTAT
Found at i:18303 original size:27 final size:26
Alignment explanation
Indices: 18191--18292 Score: 82
Period size: 26 Copynumber: 3.9 Consensus size: 26
18181 TCAGTTTACC
* *
18191 AAATTACTGAAATATCCC-C-AGTTGCA
1 AAATTACTAAAATA-CCCTCGA-TTGTA
* * * *
18217 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACTAAAATACCCTCGA-TTGTA
*
18244 AAATTACTAAAATACCGTCGATTGTA
1 AAATTACTAAAATACCCTCGATTGTA
* *
18270 AAATTACTGAAATGCCCTCGATT
1 AAATTACTAAAATACCCTCGATT
18293 TGTTGAATTA
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
25 3 0.05
26 36 0.60
27 21 0.35
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (26 bp):
AAATTACTAAAATACCCTCGATTGTA
Found at i:18314 original size:27 final size:27
Alignment explanation
Indices: 18298--18453 Score: 174
Period size: 27 Copynumber: 5.8 Consensus size: 27
18288 CGATTTGTTG
*
18298 AATTACCATTTTACCCTCGATTTA-TA
1 AATTACCATTTTACCCTCGATTTACAA
* * * *
18324 AATTATCGTTTCACCCTTGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* * * *
18351 AATTATCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
18378 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCATTTTACCCTCGA-TTTACAA
18405 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCATTTTACCCTCGA-TTTACAA
**
18432 AATTACTGTTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATT
18454 GTGAAATTAC
Statistics
Matches: 112, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 21 0.19
27 90 0.80
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.41
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAA
Found at i:18353 original size:80 final size:81
Alignment explanation
Indices: 18269--18453 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 81
18259 CGTCGATTGT
* * * * * *
18269 AAAATTACTGAAATGCCCTCGATTTGTTGAATTACCATTTTACCCTC-GATTTA-TAAATTATCG
1 AAAATTACTGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAG-TTTACAAAATTACCA
*
18332 TTTCACCCT-TGATTTAC
65 TTTCACCCTCAG-TTTAC
***
18349 AAAATTA-TCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAAAATTACCA
1 AAAATTACT-GAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAAAATTACCA
*
18413 TTTTACCCTCAGTTTAC
65 TTTCACCCTCAGTTTAC
***
18430 AAAATTACTGTTTTACCCTCGATT
1 AAAATTACTGAAATACCCTCGATT
18454 GTGAAATTAC
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
79 1 0.01
80 43 0.48
81 43 0.48
82 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (81 bp):
AAAATTACTGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAAAATTACCAT
TTCACCCTCAGTTTAC
Found at i:18444 original size:81 final size:80
Alignment explanation
Indices: 18284--18453 Score: 220
Period size: 81 Copynumber: 2.1 Consensus size: 80
18274 TACTGAAATG
* * * * * *
18284 CCCTCGATTTGTTGAATTACCATTTTACCCTCGATTTATAAATTATCGTTTCACCCTTGATTTAC
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAATTACCATTTCACCCTAGATTTAC
18349 AAAATTATCGTTTTA
66 AAAATTATCGTTTTA
*
18364 CCCTCGATTTATAGAATTACCATTTTACCCTC-AGTTTACAAAATTACCATTTTACCCTCAG-TT
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGA-TTTA-AAAATTACCATTTCACCCT-AGATT
18427 TACAAAATTA-CTGTTTTA
63 TACAAAATTATC-GTTTTA
18445 CCCTCGATT
1 CCCTCGATT
18454 GTGAAATTAC
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
79 1 0.01
80 35 0.44
81 42 0.53
82 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.41
Consensus pattern (80 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAATTACCATTTCACCCTAGATTTAC
AAAATTATCGTTTTA
Found at i:18569 original size:27 final size:27
Alignment explanation
Indices: 18458--18742 Score: 324
Period size: 27 Copynumber: 10.6 Consensus size: 27
18448 TCGATTGTGA
* * *
18458 AATTACTGAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
18485 AATTACCAAAATACCCCTG-ATTTGTAA
1 AATTACCGAAATACCCCTGTA-GGGTAG
* **
18512 AATTACCAAAATACCCCTG-ATTTGT-G
1 AATTACCGAAATACCCCTGTA-GGGTAG
**
18538 AAATTACCGAAATACCATTGTAGGGTAG
1 -AATTACCGAAATACCCCTGTAGGGTAG
*
18566 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
18593 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
18620 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
18647 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
18674 AATTATCGTAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
18701 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
18728 AATTACCGAGATACC
1 AATTACCGAAATACC
18743 TTGTGTGGTA
Statistics
Matches: 221, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.00
27 218 0.99
28 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:19239 original size:22 final size:22
Alignment explanation
Indices: 19187--19251 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
19177 TTAAAGCCTT
* *
19187 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
19209 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
19231 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
19252 ATGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:19428 original size:27 final size:27
Alignment explanation
Indices: 19393--19492 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
19383 ATGGCACAAA
* *
19393 GGCTTTGCCACATTATCTGTTTCTGGT
1 GGCTATGCCACAATATCTGTTTCTGGT
19420 GGCTATGCCACAAATATCTG-TTCTGGT
1 GGCTATGCCAC-AATATCTGTTTCTGGT
* * *
19447 GGCTCTGCCACAATATCTATATCTGGT
1 GGCTATGCCACAATATCTGTTTCTGGT
* * **
19474 GACTCTATCACAATATCTG
1 GGCTATGCCACAATATCTG
19493 ATAACTGAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 48 0.77
28 7 0.11
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (27 bp):
GGCTATGCCACAATATCTGTTTCTGGT
Found at i:19667 original size:6 final size:6
Alignment explanation
Indices: 19652--19748 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
19642 ATTCTGTTAC
* * *
19652 CTGATA CTGATT CTGATT TTGATT CT-ATT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
19701 TTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
19749 AATGTTTCTT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 5 0.07
6 59 0.82
7 5 0.07
8 3 0.04
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:19675 original size:31 final size:31
Alignment explanation
Indices: 19637--19739 Score: 161
Period size: 31 Copynumber: 3.3 Consensus size: 31
19627 ACATTCTCAT
19637 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
*
19668 TTTTGATTCTATTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
* * *
19699 TTTTGATTCTGTCACCTAATTCTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
*
19730 TTCTGATTCT
1 TTTTGATTCT
19740 AGTTCTGATA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 66 1.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTCTGA
Found at i:21753 original size:27 final size:26
Alignment explanation
Indices: 21720--22059 Score: 104
Period size: 27 Copynumber: 12.7 Consensus size: 26
21710 CCCCAGTTGC
*
21720 AAAATTACCAAAGTACCCCCGATTTAT
1 AAAATTACCAAA-TACCCTCGATTTAT
* * *
21747 AAAATTACTAAAATACCGTCGA-TTGT
1 AAAATTAC-CAAATACCCTCGATTTAT
* * *
21773 AAAATTACTGAAATGCCCTCGATTTGT
1 AAAATTAC-CAAATACCCTCGATTTAT
* **
21800 AGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCA-AATACCCTCGATTTAT
*** * *
21827 -AAATTACCGTTTCACCCTTGATTTAC
1 AAAATTACCAAAT-ACCCTCGATTTAT
****
21853 AAAATTATCGTTTTACCCTCGATTTAT
1 AAAATTA-CCAAATACCCTCGATTTAT
* ** *
21880 AGAATTACCATTTTACCCTC-AGTTTAC
1 AAAATTACCA-AATACCCTCGA-TTTAT
**
21907 AAAATTACCATTTTACCCTC-AGTTTAT
1 AAAATTACCA-AATACCCTCGA-TTTAT
**** *
21934 AAAATTACTGTTTTACCCTCGA-TTGT
1 AAAATTAC-CAAATACCCTCGATTTAT
* * **
21960 GAAATTACTGAAATACCC-CTG-TAGGAT
1 AAAATTAC-CAAATACCCTC-GAT-TTAT
* *
21987 AGAATTACCAAAATACCC-CTGATTTGT
1 AAAATTACC-AAATACCCTC-GATTTAT
*
22014 AAAATTACCAAAATACCC-CTGATTTGT
1 AAAATTACC-AAATACCCTC-GATTTAT
*
22041 GAAATTACCGAAATACCCT
1 AAAATTACC-AAATACCCT
22060 TGTAGGGTAG
Statistics
Matches: 251, Mismatches: 46, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
25 4 0.02
26 61 0.24
27 177 0.71
28 9 0.04
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (26 bp):
AAAATTACCAAATACCCTCGATTTAT
Found at i:21781 original size:26 final size:27
Alignment explanation
Indices: 21695--21833 Score: 97
Period size: 27 Copynumber: 5.3 Consensus size: 27
21685 TCAGTTTACC
* * *
21695 AAATTACTGAAATATCCC-C-AGTTGCA
1 AAATTACTAAAATA-CCCTCGATTTGTA
* * * *
21721 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
*
21748 AAATTACTAAAATACCGTCGA-TTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
21774 AAATTACTGAAATGCCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *** *
21801 GAATTACCATTTTACCCTCGATTTAT-
1 AAATTACTAAAATACCCTCGATTTGTA
21827 AAATTAC
1 AAATTAC
21834 CGTTTCACCC
Statistics
Matches: 87, Mismatches: 23, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
25 3 0.03
26 40 0.46
27 44 0.51
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:21857 original size:80 final size:81
Alignment explanation
Indices: 21773--21957 Score: 198
Period size: 80 Copynumber: 2.3 Consensus size: 81
21763 CGTCGATTGT
* * * *
21773 AAAATTACTGAAATGCCCTCGATTTGTAGAATTACCATTTTACCCTC-GATTTA-TAAATTACCG
1 AAAATTACTGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAG-TTTACAAAATTACCA
*
21836 TTTCACCCT-TGATTTAC
65 TTTCACCCTCAG-TTTAC
***
21853 AAAATTA-TCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAAAATTACCA
1 AAAATTACT-GAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAAAATTACCA
* *
21917 TTTTACCCTCAGTTTAT
65 TTTCACCCTCAGTTTAC
***
21934 AAAATTACTGTTTTACCCTCGATT
1 AAAATTACTGAAATACCCTCGATT
21958 GTGAAATTAC
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
79 1 0.01
80 44 0.49
81 43 0.48
82 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (81 bp):
AAAATTACTGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAAAATTACCAT
TTCACCCTCAGTTTAC
Found at i:21910 original size:54 final size:54
Alignment explanation
Indices: 21802--21957 Score: 203
Period size: 54 Copynumber: 2.9 Consensus size: 54
21792 CGATTTGTAG
* *
21802 AATTACCATTTTACCCTCGATTTATAAATTACCGTTTCACCCT-TGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAAATTACCGTTTTACCCTCAGATTTACAA
* * *
21855 AATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAG-TTTACAA
1 AATTACCATTTTACCCTCGATTTATA-AATTACCGTTTTACCCTCAGATTTACAA
*
21909 AATTACCATTTTACCCTC-AGTTTATAAAATTACTGTTTTACCCTC-GATT
1 AATTACCATTTTACCCTCGA-TTTAT-AAATTACCGTTTTACCCTCAGATT
21958 GTGAAATTAC
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
53 26 0.29
54 61 0.69
55 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.41
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTATAAATTACCGTTTTACCCTCAGATTTACAA
Found at i:22073 original size:27 final size:27
Alignment explanation
Indices: 21962--22300 Score: 396
Period size: 27 Copynumber: 12.6 Consensus size: 27
21952 TCGATTGTGA
* *
21962 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
21989 AATTACCAAAATACCCCTG-ATTTGTAA
1 AATTACCGAAATACCCCTGTA-GGGTAG
* **
22016 AATTACCAAAATACCCCTG-ATTTGT-G
1 AATTACCGAAATACCCCTGTA-GGGTAG
*
22042 AAATTACCGAAATACCCTTGTAGGGTAG
1 -AATTACCGAAATACCCCTGTAGGGTAG
* *
22070 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
22097 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
22124 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
22151 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
22178 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
22205 AATTATCGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
22232 AATTCCCGAAATACCTTTTTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
22259 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
22286 AATTATCGAGATACC
1 AATTACCGAAATACC
22301 TTGTGTGGTA
Statistics
Matches: 267, Mismatches: 41, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.00
27 264 0.99
28 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:22797 original size:22 final size:22
Alignment explanation
Indices: 22745--22809 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
22735 TTAAAGCCTT
* *
22745 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
22767 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
22789 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
22810 ATGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:22998 original size:27 final size:27
Alignment explanation
Indices: 22968--23069 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
22958 ATTCTGTTAA
* *
22968 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
22995 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
23022 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
23049 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
23070 ATAACTGAAC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.78
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:23245 original size:6 final size:6
Alignment explanation
Indices: 23228--23324 Score: 65
Period size: 6 Copynumber: 15.8 Consensus size: 6
23218 ATTTTGTTAC
* * * *
23228 CTGATA CTGATT CTGATT TTGATT CT-ATT ACCTAATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
23277 TTGATT CT-ATCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
23325 AATGTTTCTT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 6 0.08
6 57 0.79
7 5 0.07
8 4 0.06
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:23266 original size:31 final size:31
Alignment explanation
Indices: 23205--23316 Score: 152
Period size: 31 Copynumber: 3.6 Consensus size: 31
23195 TTGCATTCAC
* * * *
23205 ATTCTGATTTTTTATTTTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTATTACCTAATACTG
23237 ATTCTGATTTTGATTCTATTACCTAATACTG
1 ATTCTGATTTTGATTCTATTACCTAATACTG
* *
23268 ATTCTGATTTTGATTCTATCACCTAATTCTG
1 ATTCTGATTTTGATTCTATTACCTAATACTG
*
23299 ATTCTGATTCTGATTCTA
1 ATTCTGATTTTGATTCTA
23317 GTTCTGATAA
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 66 0.90
32 7 0.10
ACGTcount: A:0.22, C:0.16, G:0.11, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTATTACCTAATACTG
Found at i:25384 original size:27 final size:27
Alignment explanation
Indices: 25297--25410 Score: 88
Period size: 27 Copynumber: 4.3 Consensus size: 27
25287 CCCCTGTTGC
* * * *
25297 AAAATTACCAAAGTACCCCCGATTTAT
1 AAAATTACTAAAATACCCTCGATTTGT
* *
25324 AAAATTACTAAAATACCGTCGA-GTGT
1 AAAATTACTAAAATACCCTCGATTTGT
* *
25350 AAAATTACTGAAATGCCCTCGATTTGT
1 AAAATTACTAAAATACCCTCGATTTGT
* * *** *
25377 AGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACTAAAATACCCTCGATTTGT
25404 -AAATTAC
1 AAAATTAC
25411 CATTTCACCC
Statistics
Matches: 67, Mismatches: 19, Indels: 3
0.75 0.21 0.03
Matches are distributed among these distances:
26 27 0.40
27 40 0.60
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGATTTGT
Found at i:25434 original size:80 final size:82
Alignment explanation
Indices: 25350--25518 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 82
25340 CGTCGAGTGT
* * * *
25350 AAAATTACT-GAAATGCCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTA-TAAATTACCA
1 AAAATTACTCGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACCA
*
25413 TTTCACCCT-TGATTTAC
66 TTTCACCCTCAG-TTTAC
*** * *
25430 AAAATTA-TCGTTTTACCTTCGATTTATCGAATTACCATTTTACCCTCAATTTACAAAATTACCA
1 AAAATTACTCGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACCA
*
25494 TTTTACCCTCAGTTTAC
66 TTTCACCCTCAGTTTAC
25511 AAAATTAC
1 AAAATTAC
25519 CATTTTACCC
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 1 0.01
80 43 0.58
81 29 0.39
82 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (82 bp):
AAAATTACTCGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACCA
TTTCACCCTCAGTTTAC
Found at i:25453 original size:27 final size:27
Alignment explanation
Indices: 25365--25534 Score: 202
Period size: 27 Copynumber: 6.3 Consensus size: 27
25355 TACTGAAATG
** *
25365 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
25392 CCCTCGATTTA-TAAATTACCATTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
25418 CCCTTGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
25445 CCTTCGATTTATC-GAATTACCATTTTA
1 CCCTCGATTTA-CAAAATTACCATTTTA
*
25472 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
25499 CCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
25526 CCCTCGATT
1 CCCTCGATT
25535 ATGAAATTAC
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
26 24 0.20
27 95 0.79
28 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.06, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:25525 original size:81 final size:80
Alignment explanation
Indices: 25365--25534 Score: 234
Period size: 81 Copynumber: 2.1 Consensus size: 80
25355 TACTGAAATG
* * * *
25365 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAAATTACCATTTCACCCTTGATTTAC
1 CCCTCGATTTATAGAATTACCATTTTACCCTCAATTTAAAAATTACCATTTCACCCTAGATTTAC
* *
25430 AAAATTATCGTTTTA
66 AAAATTACCATTTTA
* * *
25445 CCTTCGATTTATCGAATTACCATTTTACCCTCAATTTACAAAATTACCATTTTACCCTCAG-TTT
1 CCCTCGATTTATAGAATTACCATTTTACCCTCAATTTA-AAAATTACCATTTCACCCT-AGATTT
25509 ACAAAATTACCATTTTA
64 ACAAAATTACCATTTTA
25526 CCCTCGATT
1 CCCTCGATT
25535 ATGAAATTAC
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 34 0.44
81 43 0.55
82 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.06, T:0.40
Consensus pattern (80 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCAATTTAAAAATTACCATTTCACCCTAGATTTAC
AAAATTACCATTTTA
Found at i:25556 original size:27 final size:26
Alignment explanation
Indices: 25526--25635 Score: 98
Period size: 27 Copynumber: 4.1 Consensus size: 26
25516 TACCATTTTA
*
25526 CCCTCGATTATGAAATTACTAAAATAC
1 CCCT-GATTATGAAATTACCAAAATAC
**
25553 CCCTGTAGGAT-AGAATTACCAAAATAC
1 CCCTG-ATTATGA-AATTACCAAAATAC
25580 CCCTGATT-TGTAAAATTACCAAAATAC
1 CCCTGATTATG--AAATTACCAAAATAC
* * *
25607 CCCTAATTTGTGAAATTACCGAAATAC
1 CCCTGA-TTATGAAATTACCAAAATAC
25634 CC
1 CC
25636 TTGTAGGGTA
Statistics
Matches: 69, Mismatches: 7, Indels: 14
0.77 0.08 0.16
Matches are distributed among these distances:
25 1 0.01
26 3 0.04
27 60 0.87
28 3 0.04
29 2 0.03
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (26 bp):
CCCTGATTATGAAATTACCAAAATAC
Found at i:25650 original size:27 final size:27
Alignment explanation
Indices: 25547--25867 Score: 346
Period size: 27 Copynumber: 11.9 Consensus size: 27
25537 GAAATTACTA
* *
25547 AAATACCCCTGTAGGATAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
** * *
25574 AAATACCCCTG-ATTTGTAAAATTACCA
1 AAATACCCCTGTA-GGGTAGAATTACCG
* **
25601 AAATACCCCT-AATTTGT-GAAATTACCG
1 AAATACCCCTGTA-GGGTAG-AATTACCG
* *
25628 AAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
25655 AAATACCCCTGCAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
25682 AAATACCCCTGTAGGGTAGAGTTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
25709 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
25736 -GATACCCTTGTAGGGTAGAATTTCCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
25762 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
25789 CAATACCCCTGTAGGGTAGAATT-CCTG
1 AAATACCCCTGTAGGGTAGAATTACC-G
* **
25816 AAATACCCTTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
25843 AAATACCCCTGTAGGGTGGAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
25868 TGTAACACCC
Statistics
Matches: 250, Mismatches: 36, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
26 24 0.10
27 223 0.89
28 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:25794 original size:134 final size:134
Alignment explanation
Indices: 25547--25867 Score: 391
Period size: 134 Copynumber: 2.4 Consensus size: 134
25537 GAAATTACTA
* ** * **
25547 AAATACCCCTGTAGGATAGAATTACCAAAATACCCCTG-ATTTGTAAAATTACCAAAATACCCCT
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTA-AGGTAGAATTACC-GGATA-CCCT
* * *
25611 AAT-TTGTG-A-AATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGCAGGGTA
63 --TGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGCAGGGTA
*
25673 GAATT-ATCG
126 GAATTCCT-G
*
25682 AAATACCCCTGTAGGGTAGAGTTACCAAAATACCCCTGTAAGGTAGAATTACCGGATACCCTTGT
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAAGGTAGAATTACCGGATACCCTTGT
* * *
25747 AGGGTAGAATTTCCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATT
66 AGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGCAGGGTAGAATT
25812 CCTG
131 CCTG
* * * *
25816 AAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTAC
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAAGGTAGAATTAC
25868 TGTAACACCC
Statistics
Matches: 162, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
131 1 0.01
132 3 0.02
133 5 0.03
134 105 0.65
135 47 0.29
136 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (134 bp):
AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAAGGTAGAATTACCGGATACCCTTGT
AGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGCAGGGTAGAATT
CCTG
Found at i:27281 original size:40 final size:41
Alignment explanation
Indices: 27234--27416 Score: 234
Period size: 40 Copynumber: 4.6 Consensus size: 41
27224 CTCGCACAAG
* * * * * *
27234 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
27274 GCCTTCGGGACTTAGCCCGGATATAGTC-C-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
27313 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
27354 GCCTTC-GGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
27394 GCCTTC-GGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
27417 CATTCGAGTA
Statistics
Matches: 131, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 3 0.02
39 32 0.24
40 78 0.60
41 18 0.14
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:27333 original size:79 final size:81
Alignment explanation
Indices: 27234--27416 Score: 248
Period size: 79 Copynumber: 2.3 Consensus size: 81
27224 CTCGCACAAG
* * * * *
27234 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGATCTTAGCCCGGATATAGTCACTTAGCACAAAAGCCTTC-GGACTTAGCCCGGATAT
*
27298 AGTC-C-TAGCACAAAT
65 AGTCGCTTAGCACAAAA
* * *
27313 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGACTTAGCCCGGATATA
1 GCCTTCGGATCTTAGCCCGGATATAGTCACTTAGCACAAAAGCCTTCGGACTTAGCCCGGATATA
27378 GTCGCTTAGCACAAAA
66 GTCGCTTAGCACAAAA
27394 GCCTTCGGA-CTTAGCCCGGATAT
1 GCCTTCGGATCTTAGCCCGGATAT
27417 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 45 0.50
80 27 0.30
81 18 0.20
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
GCCTTCGGATCTTAGCCCGGATATAGTCACTTAGCACAAAAGCCTTCGGACTTAGCCCGGATATA
GTCGCTTAGCACAAAA
Found at i:35290 original size:39 final size:40
Alignment explanation
Indices: 35232--35331 Score: 98
Period size: 40 Copynumber: 2.6 Consensus size: 40
35222 AATCAAGCAT
* * *
35232 CTTCGGGT-TT-AGCCGGATATAACCACTCGCA-CAAGGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
*** *
35269 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
* *
35309 CTTCGGGACTTAGCCCGGATATA
1 CTTCGGGTCTTAACCCGGATATA
35332 GTCGCAGCAC
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
37 8 0.16
38 2 0.04
39 16 0.32
40 24 0.48
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
Found at i:35360 original size:39 final size:39
Alignment explanation
Indices: 35267--35446 Score: 233
Period size: 40 Copynumber: 4.6 Consensus size: 39
35257 CTCGCACAAG
* * * * *
35267 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTC-GGACTTAGCCCGGATATAGTCGCTAGCACAAAT
35307 GCCTTCGGGACTTAGCCCGGATATAGTCGC-AGCACAAAT
1 GCCTTC-GGACTTAGCCCGGATATAGTCGCTAGCACAAAT
35346 GCCTTCGGATCTTAG-CCGGAT-TAGTCGCTAGCACAAAT
1 GCCTTCGGA-CTTAGCCCGGATATAGTCGCTAGCACAAAT
*
35384 GCCTTCGGACTTAGCCC-GATATAGTCGCTTAGCACAAAA
1 GCCTTCGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
35423 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTC-GGACTTAGCCCGGATAT
35447 CATTCGAGTA
Statistics
Matches: 127, Mismatches: 6, Indels: 13
0.87 0.04 0.09
Matches are distributed among these distances:
37 15 0.12
38 36 0.28
39 34 0.27
40 37 0.29
41 5 0.04
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (39 bp):
GCCTTCGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:35388 original size:77 final size:77
Alignment explanation
Indices: 35267--35446 Score: 231
Period size: 77 Copynumber: 2.3 Consensus size: 77
35257 CTCGCACAAG
* * * *
35267 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGATCTT-AGCCGGATATAGTCACTAGCACAAATGCCTTC-GGACTTAGCCC-GATATA
*
35332 GTCGC-AGCACAAAT
63 GTCGCTAGCACAAAA
*
35346 GCCTTCGGATCTTAGCCGGAT-TAGTCGCTAGCACAAATGCCTTCGGACTTAGCCCGATATAGTC
1 GCCTTCGGATCTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGACTTAGCCCGATATAGTC
35410 GCTTAGCACAAAA
66 GC-TAGCACAAAA
35423 GCCTTCGGGA-CTTAGCCCGGATAT
1 GCCTTC-GGATCTTAG-CCGGATAT
35447 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
75 11 0.12
76 11 0.12
77 39 0.43
78 16 0.18
79 13 0.14
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (77 bp):
GCCTTCGGATCTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGACTTAGCCCGATATAGTC
GCTAGCACAAAA
Done.