Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold612
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28377
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Found at i:344 original size:174 final size:172
Alignment explanation
Indices: 1--361 Score: 514
Period size: 174 Copynumber: 2.1 Consensus size: 172
* * *
1 TCAGGGAGACAAGATCTGGAACTATTCGGTCTATCCACTGTAATCTCAGAGAATAGACCTGATGC
1 TCAGGGAGATAAGATCTGGAAATATTCGGTCTATCCACTATAATCTCAGAGAATAGACCTGATGC
* * * *
66 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTT
66 GATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACTGTAATCTC
*
131 AGGGAGATAGGATTACTAGCTTCAATCAGCTCCGCTGTAATC
131 AGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAATC
*
173 TCAGGGAGATAAGATCT-GAAAT-TCTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
1 TCAGGGAGATAAGATCTGGAAATAT-TCGGTCTA-TCCACTATAATCTCAGAGA-AT-AGACCTG
*
236 ATGCGATCTACTCTACTGTAACTTAAGAGATAGATAAGATCCTTTATTCTAATCCGTTCCACTGT
62 ATGCGATCTACTCTACTGTAACTTAAGAG--AGATAAGATCCTTTATTCTAATCCGCTCCACTGT
* * * *
301 AATCTCAGGGAAATA-GATTGCTGGC-TCAATCTGCTCTGCTGTAATC
125 AATCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAATC
347 TCAGGGAGATAAGAT
1 TCAGGGAGATAAGAT
362 TCCACCATTT
Statistics
Matches: 169, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
170 1 0.01
171 12 0.07
172 33 0.20
173 2 0.01
174 69 0.41
175 8 0.05
176 44 0.26
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (172 bp):
TCAGGGAGATAAGATCTGGAAATATTCGGTCTATCCACTATAATCTCAGAGAATAGACCTGATGC
GATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACTGTAATCTC
AGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAATC
Found at i:400 original size:174 final size:173
Alignment explanation
Indices: 30--405 Score: 462
Period size: 174 Copynumber: 2.2 Consensus size: 173
20 AACTATTCGG
* * *
30 TCTA-TCCACTGTAATCTCAGAGA-AT-AGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
1 TCTACTCCACTAT-ATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGA
* * * *
92 GATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAAT
65 GATAAGATCCTTTATTCTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAAT
* *
157 CAGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTCGG
130 CAGCTCCGCTGTAATCTCAGGGAGATAAGATCTCAAATTCTCGA
*
201 TCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGA
1 TCTACTCCACTAT-ATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAG-
* * *
266 TAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCTCAGGGAAATA-GATTGCTGGC-TCA
64 -AGATAAGATCCTTTATTCTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCA
* * * *
329 ATCTGCTCTGCTGTAATCTCAGGGAGATAAGAT-TCCACCATTTTCGA
128 ATCAGCTCCGCTGTAATCTCAGGGAGATAAGATCT-CA-AATTCTCGA
*
376 T-TAGCTCCACTAT-TGCTTAGGGAGATAAGA
1 TCTA-CTCCACTATAT-CTCAGGGAGATAAGA
406 ATCTGGAATT
Statistics
Matches: 178, Mismatches: 18, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
171 4 0.02
172 17 0.10
173 4 0.02
174 86 0.48
175 23 0.13
176 44 0.25
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (173 bp):
TCTACTCCACTATATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAG
ATAAGATCCTTTATTCTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATC
AGCTCCGCTGTAATCTCAGGGAGATAAGATCTCAAATTCTCGA
Found at i:444 original size:220 final size:217
Alignment explanation
Indices: 175--801 Score: 859
Period size: 219 Copynumber: 2.9 Consensus size: 217
165 CTGTAATCTC
* *
175 AGGGAGATAAGATCTGAAATTC-TCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
239 CGATCTACTCTACTGTAACTTAAGAGATAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAAT
66 CGATCTACTCTACTGTAACTT-AGAG--AGATAAGATCCTTTATTCTAATCCGTTCCACTGTAAT
* *
304 CTCAGGGAAATA-GATTGCTGGC-TCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCCAC
128 CTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT-CAC
*
367 CATTTTCGATTAGCTCCACTATTGCTT
192 AATTTTCG-TTAGCTCCACTATTGCTT
* * *
394 AGGGAGATAAGAATCTGGAATTCTTCGGTCTATT-CACTGGAATCTCAGGGAGTTTAGACCTGAT
1 AGGGAGATAAG-ATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGAT
* * * * * *
458 GCAATCTACTCTACTGTAATTTCAGAGAGATAAGATCCATTATTTTAATCTGTTCCACTATAATC
65 GCGATCTACTCTACTGTAACTT-AGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATC
* *
523 TAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAAGATTCACA
129 TCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA-TAAGATTCACA
*
588 ATTTTCGTTTGCTCCACTATTGCTT
193 ATTTTCGTTAGCTCCACTATTGCTT
* * *
613 AGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* *** * *
678 CGATCTACTCTACTATAACATTAGAGAGATAAGATCCTTTATTTCCCTTTCGCTCCACTGTAAT-
66 CGATCTACTCTACTGTAAC-TTAGAGAGATAAGATCCTTTA-TTCTAATCCGTTCCACTGTAATC
* * * *
742 TCAGGCAAATAGGATTACTGGCTTAAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATT
129 TCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
802 ACTGGCTTCA
Statistics
Matches: 358, Mismatches: 42, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
218 69 0.19
219 158 0.44
220 115 0.32
221 16 0.04
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (217 bp):
AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTGTAACTTAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCTC
AGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACAATT
TTCGTTAGCTCCACTATTGCTT
Found at i:800 original size:44 final size:44
Alignment explanation
Indices: 729--830 Score: 152
Period size: 44 Copynumber: 2.3 Consensus size: 44
719 TTTCCCTTTC
*
729 GCTCCACTGTAAT-TCAGGCAAATAGGATTACTGGCTTAAATTT
1 GCTCCGCTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTT
* * *
772 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTT
*
816 GCTCCGCTATAATCT
1 GCTCCGCTGTAATCT
831 TTTGGAGATA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
43 12 0.23
44 41 0.77
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTT
Found at i:844 original size:219 final size:220
Alignment explanation
Indices: 115--825 Score: 827
Period size: 219 Copynumber: 3.2 Consensus size: 220
105 ATTTTAATTC
* * * * * * *
115 GCTCCACTGTAATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGCTCCGCTGTAAT-CTCAGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCAC--TATTGCTTAGG
* *
178 GAGATAAGATCTGAAATTC-TCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGA
64 GAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGA
*
242 TCTACTCTACTGTAACTTAAGAGATAGATAAGATCCTTTA-TTCTAA-TCCGTTCCACTGTAATC
129 TCTACTCTACTGTAACTTAAGAG--AGATAAGATCCTTTATTTC-AATTTCGTTCCACTGTAATC
*
305 TCAGGGAAATA-GATTGCTGGC-TCAATCT
191 TCAGGGAAATAGGATTACTGGCTTCAATCT
* * ** *
333 GCTCTGCTGTAATCTCAGGGAGATAAGATTCCACCATTTTCGATTAGCTCCACTATTGCTTAGGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATT-CACTAGCTTCAATTAGCTCCACTATTGCTTAGGG
* * * *
398 AGATAAGAATCTGGAATTCTTCGGTCTATT-CACTGGAATCTCAGGGAGTTTAGACCTGATGCAA
65 AGATAAG-ATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGA
* * * * * * *
462 TCTACTCTACTGTAATTTCAGAGAGATAAGATCCATTATTTTAATCT-GTTCCACTATAATCTAA
129 TCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTCAATTTCGTTCCACTGTAATCTCA
526 GGGAAATAGGATTACTGGCTTCAATCT
194 GGGAAATAGGATTACTGGCTTCAATCT
* * ** * *
553 GCTCCGCTGTAATCTCAGGGAGAGAAAGATTCACAATTTTC-GTTTGCTCCACTATTGCTTAGGG
1 GCTCCGCTGTAATCTCAGGGAGA-TAAGATTCACTAGCTTCAATTAGCTCCACTATTGCTTAGGG
* * *
617 AGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCGAT
65 AGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGAT
* ** *
682 CTACTCTACTATAACATT-AGAGAGATAAGATCCTTTATTTCCCTTTCGCTCCACTGTAAT-TCA
130 CTACTCTACTGTAAC-TTAAGAGAGATAAGATCCTTTATTTCAATTTCGTTCCACTGTAATCTCA
* * *
745 GGCAAATAGGATTACTGGCTTAAATTT
194 GGGAAATAGGATTACTGGCTTCAATCT
* * * *
772 GCTCCGCTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATTTGCTCCGCTAT
1 GCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAT
826 AATCTTTTGG
Statistics
Matches: 419, Mismatches: 60, Indels: 28
0.83 0.12 0.06
Matches are distributed among these distances:
217 5 0.01
218 105 0.25
219 167 0.40
220 126 0.30
221 16 0.04
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (220 bp):
GCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTATTGCTTAGGGA
GATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATC
TACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTCAATTTCGTTCCACTGTAATCTCAGG
GAAATAGGATTACTGGCTTCAATCT
Found at i:1034 original size:480 final size:480
Alignment explanation
Indices: 297--1323 Score: 1355
Period size: 480 Copynumber: 2.1 Consensus size: 480
287 ATCCGTTCCA
* * *
297 CTGTAATCTCAGGGAAATA-GATTGCTGGCTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGA
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
* * * * *
361 TTCCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGAATCTGGAATTCTTCGGTCTA
66 TTCCACCATCTTCGATTAGCTCCACTATTGCTTAGGAAGACAAGAATCTGGAACTCTTCGGCCTA
* ** *
426 TTCACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAATTTCAGAGAGATAA
131 TTCACAGGAATCTCAGGGAGAATAGACCTGATGCAATCTACTCTACTGTAACTTCAGAGAGATAA
* *
491 GATCCATTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCT
196 GATCCATTATTTTAATCCGTTCCACTATAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCT
*
556 CCGCTGTAATCTCAGGGAGAGAAAGATTCACAATTTTCGT-TT-GCTCCACTATTGCTTAGGGAG
261 CCGCTATAATCTCAGGGAGA-AAAGATTCACAATTTT-GTATTAGCTCCACTATTGCTTAGGGAG
*
619 ATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCGATCT
324 ATAAGATCTGGATTTATTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCGATCT
* *
684 ACTCTACTATAACATTAGAGAGATAAGATCCTTTATTTCCCTTTC-GCTCCACTGTAAT-TCAGG
389 ACTCTACTATAACATTAGAGAGATAAGATCCTTTATTT---TATCTGCTCCACTATAATATCAGG
747 CAAATAGGATTACTGGCTTAAATTTGCTCCG
451 CAAATAGGATTACT-GCTTAAATTTGCTCCG
* * ***
778 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTATAATCTTTTGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGC-TCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
*
843 ATT-CACCATCTTCGATCT-GCTCCCCTATTG-TTCAGGAAGACAAG-ATCTGGAACTCTTCGGC
65 ATTCCACCATCTTCGAT-TAGCTCCACTATTGCTT-AGGAAGACAAGAATCTGGAACTCTTCGGC
* *
904 CTATTCCACAGTAATCTCAGGGA-AATAGAACCTGATGCGATCTACTC-ACTGTAACTTCAGAGA
128 CTATT-CACAGGAATCTCAGGGAGAATAG-ACCTGATGCAATCTACTCTACTGTAACTTCAGAGA
* * * * *
967 GAT-ATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AA
191 GATAAGATCCATTATTTTAATCCGTTCCACTATAATCTAAGGGAAATAGGATTACTAGC-TTCAA
* * ** * *
1030 TCTGCTCTGTTATAATCTCAGGGAGATTAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAG
255 TCTGCTCCGCTATAATCTCAGGGAGAAAAGATTCACAATTTTGTATTAGCTCCACTATTGCTTAG
* * * *
1095 GGAGATAAGATCTGGATTTATTCAGTTTATTCCGCTGTAATCTCATGGAGATAAGACCTGATGCG
320 GGAGATAAGATCTGGATTTATTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCG
* * *
1160 ATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTATCTGCTCTACTATAATATCAG
385 ATCTACTCTACTATAACATTAGAGAGATAAGATCCTTTATTTTATCTGCTCCACTATAATATCAG
* * * *
1225 GGAAATAGGATTACTTCTTCAATTTTCTCCG
450 GCAAATAGGATTACTGCTTAAATTTGCTCCG
* *
1256 CTGTAATATCTCAGAGAGATAGGATTACTGG-TCAATCTGCT-CGCTGTAATCCCAGGGAAGATA
1 CTGT-A-ATCTCAGGGAGATAGGATTACTGGCTCAATCTGCTCCGCTGTAATCTCAGGG-AGATA
*
1319 GGATT
63 AGATT
1324 ACTGGCTTCA
Statistics
Matches: 476, Mismatches: 56, Indels: 31
0.85 0.10 0.06
Matches are distributed among these distances:
477 14 0.03
478 47 0.10
479 34 0.07
480 213 0.45
481 63 0.13
482 73 0.15
483 32 0.07
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (480 bp):
CTGTAATCTCAGGGAGATAGGATTACTGGCTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
TTCCACCATCTTCGATTAGCTCCACTATTGCTTAGGAAGACAAGAATCTGGAACTCTTCGGCCTA
TTCACAGGAATCTCAGGGAGAATAGACCTGATGCAATCTACTCTACTGTAACTTCAGAGAGATAA
GATCCATTATTTTAATCCGTTCCACTATAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCT
CCGCTATAATCTCAGGGAGAAAAGATTCACAATTTTGTATTAGCTCCACTATTGCTTAGGGAGAT
AAGATCTGGATTTATTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCGATCTAC
TCTACTATAACATTAGAGAGATAAGATCCTTTATTTTATCTGCTCCACTATAATATCAGGCAAAT
AGGATTACTGCTTAAATTTGCTCCG
Found at i:1137 original size:217 final size:217
Alignment explanation
Indices: 772--1281 Score: 539
Period size: 217 Copynumber: 2.3 Consensus size: 217
762 GCTTAAATTT
* * * ***
772 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTATAATCTTTTGGA
1 GCTCCACTGTAATCTCAGGGA-ATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGA
* * *
837 GATAAGATTCACCATCTTCGATCTGCTCCCCTATTGTTCAGGAAGACAAGATCTGGAACTCTTCG
65 GATAAGATTCACCATCTTCGATCTGCTCCACTATTGTTCAGGAAGACAAGATCTGGAACTATTCA
902 GCCTATTCCACAGTAATCTCAGGGAAAT-AGAACCTGATGCGATCTACTC-ACTGTAACTTCAGA
130 GCCTATTCCACAGTAATCTCAGGGAAATAAG-ACCTGATGCGATCTACTCTACTGTAACTTCAGA
*
965 GAGAT-ATATCCTTTATTTTAATCC
194 GAGATAAGATCCTTTATTTT-ATCC
* * *
989 GTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGG
1 GCTCCACTGTAATCTCAGGG-AATAGGATTACTAGC-TTCAATCTGCTCCGCTATAATCTCAGGG
* * ** * * **
1053 AGATTAGATTCACCATTTTTTAT-TAGCTCCACTATTGCTT-AGGGAGATAAGATCTGGATTTAT
64 AGATAAGATTCACCATCTTCGATCT-GCTCCACTATTG-TTCAGGAAGACAAGATCTGGAACTAT
** * * * * *
1116 TCAGTTTATTCCGCTGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTA
127 TCAGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCA
*
1181 GAGAGATAAGATCCTTTATTTTATCT
192 GAGAGATAAGATCCTTTATTTTATCC
* * * * * * * *
1207 GCTCTACTATAATATCAGGGAAATAGGATTACT-TCTTCAATTTTCTCCGCTGTAATATCTCAGA
1 GCTCCACTGTAATCTCAGGG-AATAGGATTACTAGCTTCAATCTGCTCCGCTAT-A-ATCTCAGG
*
1271 GAGATAGGATT
63 GAGATAAGATT
1282 ACTGGTCAAT
Statistics
Matches: 240, Mismatches: 43, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
216 3 0.01
217 151 0.63
218 57 0.24
219 29 0.12
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (217 bp):
GCTCCACTGTAATCTCAGGGAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAG
ATAAGATTCACCATCTTCGATCTGCTCCACTATTGTTCAGGAAGACAAGATCTGGAACTATTCAG
CCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
GATAAGATCCTTTATTTTATCC
Found at i:1280 original size:45 final size:46
Alignment explanation
Indices: 1229--1350 Score: 137
Period size: 44 Copynumber: 2.7 Consensus size: 46
1219 TATCAGGGAA
* * *
1229 ATAGGATTACTTCTTCAATTTTCTCCGCTGTAATATCTCAGAG-AG
1 ATAGGATTACTTCTTCAATCTGCTCCGCTGTAATATCCCAGAGAAG
** *
1274 ATAGGATTAC-TGGTCAATCTGCT-CGCTGT-A-ATCCCAGGGAAG
1 ATAGGATTACTTCTTCAATCTGCTCCGCTGTAATATCCCAGAGAAG
*
1316 ATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
1 ATAGGATTACT-TCTTCAATCTGCTCCGCTGTAAT
1351 CTTATGGAGA
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
41 7 0.11
42 13 0.21
43 6 0.10
44 19 0.31
45 16 0.26
46 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (46 bp):
ATAGGATTACTTCTTCAATCTGCTCCGCTGTAATATCCCAGAGAAG
Found at i:1735 original size:173 final size:167
Alignment explanation
Indices: 1396--1751 Score: 457
Period size: 173 Copynumber: 2.1 Consensus size: 167
1386 CCACTATTCG
* * * *
1396 CTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCTGTAATCTCAGATATAAAGACCTGATG
1 CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCTATAATCTCAGAGATAAAGACCTGATG
* * *
1461 CGATCTACTCTCTAACTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTTAGG
66 CGATCTACTCTCTAACTAAGAGAGATAAGATCCTTTATTCTAATTCGCTCCACTGTAATCTCAGG
*
1526 GAGATAAGATTCTAGCTTCAATCAGCTCCGCTGTAAT
131 GAAATAAGATTCTAGCTTCAATCAGCTCCGCTGTAAT
* *
1563 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGAT-AAGACCT
1 CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATT-C-CTATAATCTCA--GAGATAAAGACCT
* *
1627 GATGCGATCTATCTACTGTAACTTAAGAGAGATAAGAT-CTTTATTCTAA-TCTGTTCCACTGTA
62 GATGCGATCTA-CT-CTCTAAC-TAAGAGAGATAAGATCCTTTATTCTAATTC-GCTCCACTGTA
* * * *
1690 ATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAAT
123 ATCTCAGGGAAATAAGATT-CTAGCTTCAATCAGCTCCGCTGTAAT
*
1736 CTCAGGCAGATAAGAT
1 CTCAGGGAGATAAGAT
1752 TCACCATTTT
Statistics
Matches: 163, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
167 32 0.20
168 1 0.01
169 10 0.06
170 18 0.11
171 8 0.05
172 42 0.26
173 52 0.32
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (167 bp):
CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCTATAATCTCAGAGATAAAGACCTGATG
CGATCTACTCTCTAACTAAGAGAGATAAGATCCTTTATTCTAATTCGCTCCACTGTAATCTCAGG
GAAATAAGATTCTAGCTTCAATCAGCTCCGCTGTAAT
Found at i:2081 original size:220 final size:218
Alignment explanation
Indices: 1566--2179 Score: 905
Period size: 220 Copynumber: 2.8 Consensus size: 218
1556 CTGTAATCTC
* *
1566 AGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* *
1631 CGATCTA-TCTACTGTAACTTAAGAGAGATAAGAT-CTTTATTCTAATCTGTTCCACTGTAATCT
66 CGATCTACTCTACTGTAAATT-AGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCT
* * * *
1694 CAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGCAGATAAGATTCACCAT
130 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGCAGAGAAGATTCACAAT
1759 TTTCGATTAGCTCCACTATTGCTT
195 TTTCGATTAGCTCCACTATTGCTT
* *
1783 -GGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTG-AATCTCAGGGAGTTTAGAACCTGAT
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAG-ACCTGAT
* * *
1846 GCAATCTACTCTACTGTAATTTCAGAGAGAT-AGATCCTTTATTTTAATCTGTTCCACTATAATC
65 GCGATCTACTCTACTGTAAATT-AGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATC
* *
1910 TAAGGGAAATAGGATTTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCAAC
129 TCAGGGAAATAGGA-TTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGCAGAGAAGATTC-AC
*
1975 AATTTTCGATTTGCTCCACTATTGCTT
192 AATTTTCGATTAGCTCCACTATTGCTT
* * *
2002 AGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* * *
2067 CGATCTACTCTACTGTAACATTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATCT
66 CGATCTACTCTACTGTAA-ATTAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCT
* * * *
2132 CAGGCAAATAGGATTACTGGCTTAAATTTGCTCCACTGTAATCTCAGG
130 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGG
2180 AGATAGGATT
Statistics
Matches: 356, Mismatches: 32, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
215 15 0.04
216 54 0.15
217 59 0.17
218 43 0.12
219 27 0.08
220 101 0.28
221 57 0.16
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (218 bp):
AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTGTAAATTAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTC
AGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGCAGAGAAGATTCACAATT
TTCGATTAGCTCCACTATTGCTT
Found at i:2203 original size:43 final size:44
Alignment explanation
Indices: 2117--2218 Score: 170
Period size: 43 Copynumber: 2.3 Consensus size: 44
2107 ATTTTCATCC
2117 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTT
1 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTT
* *
2161 GCTCCACTGTAATCTCAGG-AGATAGGATTACTGGCTTCAATTT
1 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTT
*
2204 GCTCCGCTGTAATCT
1 GCTCCACTGTAATCT
2219 TTTGGAGATA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 36 0.65
44 19 0.35
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (44 bp):
GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTT
Found at i:2666 original size:481 final size:481
Alignment explanation
Indices: 1681--2714 Score: 1435
Period size: 481 Copynumber: 2.1 Consensus size: 481
1671 TCTAATCTGT
* * *
1681 TCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGCAGA
1 TCCACTGTAATCTCA-GGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGCAGA
* * * * *
1746 TAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTGGGAGATAAGATCTGGAATTCTTCGGTC
65 TAAGATTCACCATCTTCGATTAGCTCCACTATTGCTTGGAAGACAAGATCTGGAACTCTTCGGCC
* ** * *
1811 TATTCCACTGAATCTCAGGGAGTTTAGAACCTGATGCAATCTACTCTACTGTAATTTCAGAGAGA
130 TATTCCACAGAATCTCAGGGAAATAAGAACCTGATGCAATCTACTCTACTGTAACTTCAGAGAGA
* * *
1876 TAGATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTTACTGGCTTCAATCT
195 TAGATCCTTTATTTTAATCCGTTCCACTATAATCTAAGGGAAATAGGATTTACTAGCTTCAATAT
*
1941 GCTCCGCTGTAATCTCAGGGAGAGAAGATTCAACAATTTTCGATTTGCTCCACTATTGCTTAGGG
260 GCTCCGCTGTAATCTCAGGGAGAGAAGATTCAACAATTTTCGATTAGCTCCACTATTGCTTAGGG
*
2006 AGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCGAT
325 AGATAAGATCTGGATTTATTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCGAT
* *
2071 CTACTCTACTGTAACATTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATCTCAGG
390 CTACTCTACTGTAACATTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTATAATATCAGG
2136 CAAATAGGATTACTGGCTTAAATTTGC
455 CAAATAGGATTACTGGCTTAAATTTGC
* **
2163 TCCACTGTAATCTCAGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGG-AGA
1 TCCACTGTAATCTCAGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC-TCAGGCAGA
2227 TAAGATTCACCATCTTCGATCT-GCTCCACTATTG-TTCAGGAAGACAAGATCTGGAACTCTTCG
65 TAAGATTCACCATCTTCGAT-TAGCTCCACTATTGCTT--GGAAGACAAGATCTGGAACTCTTCG
*
2290 GCCTATTCCACAGTAATCTCAGGGAAATAAG-ACCTGATGCGATCTACTCTAACTGTAACTTCAG
127 GCCTATTCCACAG-AATCTCAGGGAAATAAGAACCTGATGCAATCTACTCT-ACTGTAACTTCAG
* * * *
2354 AGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGA-TTACTAGCAT
190 AGAGAT-AGATCCTTTATTTTAATCCGTTCCACTATAATCTAAGGGAAATAGGATTTACTAGC-T
* * **
2418 T-AATATGCTCTG-T-TATATCTCAGGGAGA-ACAGATTC-ACCATTTTTTATTAGCTCCACTAT
253 TCAATATGCTCCGCTGTA-ATCTCAGGGAGAGA-AGATTCAACAATTTTCGATTAGCTCCACTAT
* * * *
2478 TGCTTAGGGAGATAAGATTCTGGATTTATTCAGTTTATTCCGCTGTAATCTCATGGAG-TAAGAC
316 TGCTTAGGGAGATAAGA-TCTGGATTTATTCAGTCTATTCCACTGTAATATCAGGGAGATAAGAC
* *
2542 CTGATGCGATCTACTCTACT-TAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTA
380 CTGATGCGATCTACTCTACTGTAACATTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTA
* * * *
2606 TAATATCAGGGAAATAGGATTACTTGCTTCAATTTTC
445 TAATATCAGGCAAATAGGATTACTGGCTTAAATTTGC
* * * * *
2643 TCCGCTGTAATCTCAGAGAGATAGGATTACTGGGTACAATCTGCTCCGCTGTAATCCCAGGGAGA
1 TCCACTGTAATCTCAG-GAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGCAGA
*
2708 TAGGATT
65 TAAGATT
2715 ACTGGCTTCA
Statistics
Matches: 489, Mismatches: 50, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
480 92 0.19
481 181 0.37
482 124 0.25
483 48 0.10
484 44 0.09
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (481 bp):
TCCACTGTAATCTCAGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGCAGAT
AAGATTCACCATCTTCGATTAGCTCCACTATTGCTTGGAAGACAAGATCTGGAACTCTTCGGCCT
ATTCCACAGAATCTCAGGGAAATAAGAACCTGATGCAATCTACTCTACTGTAACTTCAGAGAGAT
AGATCCTTTATTTTAATCCGTTCCACTATAATCTAAGGGAAATAGGATTTACTAGCTTCAATATG
CTCCGCTGTAATCTCAGGGAGAGAAGATTCAACAATTTTCGATTAGCTCCACTATTGCTTAGGGA
GATAAGATCTGGATTTATTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCGATC
TACTCTACTGTAACATTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTATAATATCAGGC
AAATAGGATTACTGGCTTAAATTTGC
Found at i:2690 original size:44 final size:44
Alignment explanation
Indices: 2593--2743 Score: 203
Period size: 44 Copynumber: 3.4 Consensus size: 44
2583 CTTTATTTTC
* * * * *
2593 ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTTGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
* * * * *
2637 ATTTTCTCCGCTGTAATCTCAGAGAGATAGGATTACTGGGTACA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
*
2681 ATCTGCTCCGCTGTAATCCCAGGGAGATAGGATTACTGGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
2725 ATCTGCTCCGCTGTAATCT
1 ATCTGCTCCGCTGTAATCT
2744 TATGGAGAAA
Statistics
Matches: 90, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 90 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
Found at i:2991 original size:174 final size:175
Alignment explanation
Indices: 2786--3150 Score: 561
Period size: 175 Copynumber: 2.1 Consensus size: 175
2776 TCCACTATTG
* ** *
2786 CTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTAAAACTATTCGGTCTATTCCACTATAATCTCAGAGAGATAAGACCTG
* * * *
2851 ATGCGATCTACTCTA-TGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTTTAA
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACTGTAA
* *
2915 TCTTAGGGAGATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
131 TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
* * *
2960 CTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTAAAACTATTCGGTCTATTCCACTATAATCTCAGAGAGATAAGACCTG
*
3025 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAA
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACTGTAA
* * * *
3090 TCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAAT
131 TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
3135 CTCAGGGAGATAAGAT
1 CTCAGGGAGATAAGAT
3151 TCACCATTTT
Statistics
Matches: 172, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
174 73 0.42
175 99 0.58
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (175 bp):
CTCAGGGAGATAAGATCTAAAACTATTCGGTCTATTCCACTATAATCTCAGAGAGATAAGACCTG
ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACTGTAA
TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
Found at i:3230 original size:217 final size:218
Alignment explanation
Indices: 2963--3584 Score: 905
Period size: 217 Copynumber: 2.9 Consensus size: 218
2953 CTGTAATCTC
* *
2963 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTAGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
*
3028 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTT-AGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* *
3093 CAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCAT
130 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACAAT
3158 TTTCGATTAGCTCCACTATTGCTT
195 TTTCGATTAGCTCCACTATTGCTT
* * *
3182 AGGGAGATAAGATCT-GAATTCTT-GGTCTATTCCACTGGAATCTCAGGGAGTTTAGACCTGATG
1 AGGGAGATAAGATCTAGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* * * *
3245 CAATCTACTCTACTGTAATTTTAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATCT
66 CGATCTACTCTACTGTAA-CTTAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* * * *
3310 AAGGGAAATAGGATTACTGGATTCAAATCTGCTCCGCTGT-ATCTCAGGGAGAGAAGATTCACAA
130 CAGGGAAATAGGATTACTGGCTTC-AATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACAA
*
3374 TTTTCGATTTGCTCCACTATTGCTT
194 TTTTCGATTAGCTCCACTATTGCTT
* * * *
3399 AGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGG-GATAAGACCTGAT-
1 AGGGAGATAAGATCTAGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* * *
3462 CGATCTACTCTACTGTAACATTAGAGAGATAAGATCCTTTATTTTCATGCGCTCCACTGTAAT-T
66 CGATCTACTCTACTGTAAC-TTAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* * * * *
3526 CAGGCAAATAGGATTACTGGCTTAAATTTGCTCTGCTGTAATCTCAAGGAGATAGGATT
130 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATT
3585 ACTGGCTTCA
Statistics
Matches: 358, Mismatches: 39, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
215 13 0.04
216 37 0.10
217 230 0.64
218 41 0.11
219 37 0.10
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (218 bp):
AGGGAGATAAGATCTAGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTGTAACTTAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTC
AGGGAAATAGGATTACTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACAATT
TTCGATTAGCTCCACTATTGCTT
Found at i:3623 original size:44 final size:44
Alignment explanation
Indices: 3512--3613 Score: 145
Period size: 44 Copynumber: 2.3 Consensus size: 44
3502 ATTTTCATGC
* *
3512 GCTCCACTGTAAT-TC-AGGCAAATAGGATTACTGGCTTAAATTT
1 GCTCCGCTGTAATCTCAAGG-AGATAGGATTACTGGCTTAAATTT
* *
3555 GCTCTGCTGTAATCTCAAGGAGATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAAGGAGATAGGATTACTGGCTTAAATTT
3599 GCTCCGCTGTAATCT
1 GCTCCGCTGTAATCT
3614 TTTGGAGATA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
43 11 0.21
44 38 0.73
45 3 0.06
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAAGGAGATAGGATTACTGGCTTAAATTT
Found at i:4077 original size:44 final size:44
Alignment explanation
Indices: 4014--4136 Score: 183
Period size: 44 Copynumber: 2.8 Consensus size: 44
4004 TATCAGGGAA
* * * * *
4014 ATAGGATTACTTGCTTCAATTTTCTCTGCTGTAATCTCAGAGAG
1 ATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCCCAGAGAG
* *
4058 ATAGGATTACTGGGTTCAATCTGCTCCGCTGTAATCCCAGGGAG
1 ATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCCCAGAGAG
4102 ATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
1 ATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
4137 TCTTATGGAG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (44 bp):
ATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCCCAGAGAG
Found at i:4171 original size:45 final size:44
Alignment explanation
Indices: 4018--4173 Score: 143
Period size: 44 Copynumber: 3.5 Consensus size: 44
4008 AGGGAAATAG
* * * * * * * *
4018 GATTACTTGCTTCAATTTTCTCTGCTGTAATCTCAGAGAGATAG
1 GATTACTGGCTTCAATCTGCTCCGCTGTAATCCCAGGGAGAAAA
* * *
4062 GATTACTGGGTTCAATCTGCTCCGCTGTAATCCCAGGGAGATAG
1 GATTACTGGCTTCAATCTGCTCCGCTGTAATCCCAGGGAGAAAA
** *
4106 GATTACTGGCTTCAATCTGCTCCGCTGTAATTCTTATGGAGAAAA
1 GATTACTGGCTTCAATCTGCTCCGCTGTAA-TCCCAGGGAGAAAA
* *
4151 GATTCACTGTCTT-GATCTGCTCC
1 GATT-ACTGGCTTCAATCTGCTCC
4174 ACTATTGCTC
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
44 66 0.69
45 22 0.23
46 7 0.07
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (44 bp):
GATTACTGGCTTCAATCTGCTCCGCTGTAATCCCAGGGAGAAAA
Found at i:4389 original size:175 final size:175
Alignment explanation
Indices: 4181--4546 Score: 570
Period size: 175 Copynumber: 2.1 Consensus size: 175
4171 TCCACTATTG
* * * *
4181 CTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTGAAACTATCCGGTCTATTCCACTATAATCTCAGAGAGATAAGACCTG
* * *
4246 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTCACTCCACTGTAA
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCACTCCACTGTAA
* *
4311 TCTTAGGGAGATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
131 TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
* * *
4356 CTCAGGGAGATAAGATCTGAAATTCTCCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTGAAACTATCCGGTCTATTCCACTATAATCTCAGAGAGATAAGACCTG
**
4421 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAA
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCACTCCACTGTAA
* * * *
4486 TCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAAT
131 TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
4531 CTCAGGGAGATAAGAT
1 CTCAGGGAGATAAGAT
4547 TCACCATTTT
Statistics
Matches: 173, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
175 173 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (175 bp):
CTCAGGGAGATAAGATCTGAAACTATCCGGTCTATTCCACTATAATCTCAGAGAGATAAGACCTG
ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCACTCCACTGTAA
TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
Found at i:4485 original size:219 final size:218
Alignment explanation
Indices: 4300--5004 Score: 864
Period size: 219 Copynumber: 3.2 Consensus size: 218
4290 TTTTAATTCA
* * * * * *
4300 CTCCACTGTAATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGCTCCGCTGTAAT-CTCAGGG
1 CTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCAC--TAATGCTTAGGG
* *
4363 AGATAAGATCTGAAATTCTCCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGAT
64 AGATAAGATCTGGAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGAT
* *
4428 CTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCTCAGG
129 CTACTCTACTGTAACTT-AGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGA
*
4493 GAAATAGGATTGCTGGCTTCAATCTG
193 GAAATAGGATTACTGGCTTCAATCTG
* * ** * *
4519 CTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAG
1 CTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATGCTTAGGGAG
* * * *
4584 ATAAGATCTGGAATTCTTCGGTCTATTCCACTAGAATCTCAGGGAGTTTAGACCTGATGCAATCT
66 ATAAGATCTGGAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCT
* * * * *
4649 ACTCTACTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTT-TACTATAATCTAAGAG-
131 ACTCTACTGTAACTT-AGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGAGA
4712 AATAGGATTACTGGCTTCAATCTG
195 AATAGGATTACTGGCTTCAATCTG
* * * ** * * *
4736 CTCCGCTGTATATCTTAGGGAGAGAAGATTCACAATTTTCGATTTGCTCCACTATTGCTTAGGGA
1 CTCCGCTGTA-ATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATGCTTAGGGA
* * * * *
4801 GATAAGATTCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACTTGATGCGAT
65 GATAAGA-TCTGGAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGAT
** * *
4866 CTACTCTACTGTAACATTAGAGAGATAAGATCCTTTATTTTCTTACGCTCCACTGTAATCTCAG-
129 CTACTCTACTGTAAC-TTAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGA
* *
4930 GCAAATAGGATTACTGGCTTAAATTTG
193 G-AAATAGGATTACTGGCTTCAATCTG
* * *
4957 CTCCGCTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATTTGCTCC
1 CTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCC
5005 GCTGTAATCT
Statistics
Matches: 418, Mismatches: 60, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
217 32 0.08
218 72 0.17
219 238 0.57
220 44 0.11
221 32 0.08
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (218 bp):
CTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATGCTTAGGGAG
ATAAGATCTGGAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCT
ACTCTACTGTAACTTAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGAGAA
ATAGGATTACTGGCTTCAATCTG
Found at i:5024 original size:44 final size:44
Alignment explanation
Indices: 4912--5014 Score: 170
Period size: 44 Copynumber: 2.3 Consensus size: 44
4902 ATTTTCTTAC
* * *
4912 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTAAATTT
*
4956 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTAAATTT
5000 GCTCCGCTGTAATCT
1 GCTCCGCTGTAATCT
5015 TTTGGAGATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTAAATTT
Found at i:5344 original size:219 final size:218
Alignment explanation
Indices: 4956--5435 Score: 554
Period size: 219 Copynumber: 2.2 Consensus size: 218
4946 GCTTAAATTT
* * * * ***
4956 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGA
1 GCTCCACTGTAATCTCAGGGA-ATAGGATTACTAGCTTCAATATGCTCCGCTATAATCTCAGGGA
* *
5021 GATAAGATTCACCATCTTCGATCTGCTCCACTATTGTTCAGGAAGACAAGATCTGGAACTCTTCG
65 GATAAGATTCACCATCTTCGATCTGCTCCACTATTGTTCAGGAAGACAAGATCTGGAACTATTCA
*
5086 GCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATACTACT-AACTGTAACTTTAGA
130 GCCTATTCCACAGTAATCTCAGGGAAATAAGAACTGATGCGAT-CTACTCAACTGTAACTTTAGA
*
5150 GAGATAATATCCTTTATTTTAATCC
194 GAGATAAGATCCTTTATTTTAATCC
* * *
5175 GTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATATGCTCTGTTATAATCTCAGGG
1 GCTCCACTGTAATCTCAGGG-AATAGGATTACTAGC-TTCAATATGCTCCGCTATAATCTCAGGG
* * ** * * * **
5239 AGATCAGATTCACCATTTTTTAT-TAGCTCCACTATTGCTT-AGGGAGATAAGATTTGGATTTAT
64 AGATAAGATTCACCATCTTCGATCT-GCTCCACTATTG-TTCAGGAAGACAAGATCTGGAACTAT
** * * * * *
5302 TCAGTTTATTCCGCTGTAATCTCATGGAGATAAGAACTGATGCGATCTACTCTACTGTAACTTTA
127 TCAGCCTATTCCACAGTAATCTCAGGGAAATAAGAACTGATGCGATCTACTCAACTGTAACTTTA
* *
5367 GAGAGATAAGATCCTTTATTTTCATCT
192 GAGAGATAAGATCCTTTATTTTAATCC
* * *
5394 GCTCCACTATAATATCAGGGAAATAGGATTACTTGCTTCAAT
1 GCTCCACTGTAATCTCAGGG-AATAGGATTACTAGCTTCAAT
5436 TTTCTCTGCG
Statistics
Matches: 218, Mismatches: 37, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
218 8 0.04
219 205 0.94
220 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (218 bp):
GCTCCACTGTAATCTCAGGGAATAGGATTACTAGCTTCAATATGCTCCGCTATAATCTCAGGGAG
ATAAGATTCACCATCTTCGATCTGCTCCACTATTGTTCAGGAAGACAAGATCTGGAACTATTCAG
CCTATTCCACAGTAATCTCAGGGAAATAAGAACTGATGCGATCTACTCAACTGTAACTTTAGAGA
GATAAGATCCTTTATTTTAATCC
Found at i:5345 original size:482 final size:482
Alignment explanation
Indices: 4480--5503 Score: 1390
Period size: 482 Copynumber: 2.1 Consensus size: 482
4470 ATCCGTTCCA
* * *
4480 CTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
* * * * *
4545 ATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTAT
66 ATTCACCATCTTCGATTAGCTCCACTATTGCTTAGGAAGACAAGATCTGGAACTCTTCGGCCTAT
** * *
4610 TCCACTAGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAA
131 TCCACTAGAATCTCAGGGAAATAAGACCTGATGCAATCTACTCAACTGTAAATTCAGAGAGATAA
* * * *
4675 GATCCTTTATTTTAATCTGTTTACTATAATCTAAGAGAATAGGATTACTGGCTTCAATCTGCTCC
196 GATCCTTTATTTTAATCCGTTCACTATAATCTAAGAGAATAGGATTACTAGCTTCAATATGCTCC
* *
4740 GCTGTATATCTTAGGGAGAGAAGATTCACAATTTTCGATTTGCTCCACTATTGCTTAGGGAGATA
261 GCTGTATATCTCAGGGAGAGAAGATTCACAATTTTCGATTAGCTCCACTATTGCTTAGGGAGATA
*
4805 AGATTCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACTTGATGCGATCTAC
326 AGATTCTGGATTTATTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACTTGATGCGATCTAC
* * *
4870 TCTACTGTAACATTAGAGAGATAAGATCCTTTATTTTCTTAC-GCTCCACTGTAATCTCAGGCAA
391 TCTACTGTAACATTAGAGAGATAAGATCCTTTATTTTCAT-CTGCTCCACTATAATATCAGGCAA
4934 ATAGGATTACTGGCTTAAATTTGCTCCG
455 ATAGGATTACTGGCTTAAATTTGCTCCG
* ***
4962 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
5027 ATTCACCATCTTCGATCT-GCTCCACTATTG-TTCAGGAAGACAAGATCTGGAACTCTTCGGCCT
66 ATTCACCATCTTCGAT-TAGCTCCACTATTGCTT-AGGAAGACAAGATCTGGAACTCTTCGGCCT
* * *
5090 ATTCCAC-AGTAATCTCAGGGAAATAAGACCTGATGCGATACTACT-AACTGTAACTTTAGAGAG
129 ATTCCACTAG-AATCTCAGGGAAATAAGACCTGATGCAAT-CTACTCAACTGTAAATTCAGAGAG
* * * *
5153 ATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AAT
192 ATAAGATCCTTTATTTTAATCCGTT-CACTATAATCTAAGAG-AATAGGATTACTAGC-TTCAAT
* ** * **
5217 ATGCTCTG-T-TATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTA
254 ATGCTCCGCTGTAT-ATCTCAGGGAGAGAAGATTCACAATTTTCGATTAGCTCCACTATTGCTTA
* * * *
5280 GGGAGATAAGATT-TGGATTTATTCAGTTTATTCCGCTGTAATCTCATGGAGATAAGAAC-TGAT
318 GGGAGATAAGATTCTGGATTTATTCAGTCTATTCCACTGTAATATCAGGGAGATAAG-ACTTGAT
*
5343 GCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATA
382 GCGATCTACTCTACTGTAACATTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATA
* * * * *
5408 TCAGGGAAATAGGATTACTTGCTTCAATTTTCTCTG
447 TCAGGCAAATAGGATTACTGGCTTAAATTTGCTCCG
* * * *
5444 C-GTAATCTCTGAGAGATAGGATTACTGG-GTCAATCTGCTCCGCTGTAATCCCA-GGAGATA
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATA
5504 GGATAACTGG
Statistics
Matches: 476, Mismatches: 56, Indels: 23
0.86 0.10 0.04
Matches are distributed among these distances:
479 7 0.01
480 20 0.04
481 30 0.06
482 317 0.67
483 77 0.16
484 23 0.05
485 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (482 bp):
CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
ATTCACCATCTTCGATTAGCTCCACTATTGCTTAGGAAGACAAGATCTGGAACTCTTCGGCCTAT
TCCACTAGAATCTCAGGGAAATAAGACCTGATGCAATCTACTCAACTGTAAATTCAGAGAGATAA
GATCCTTTATTTTAATCCGTTCACTATAATCTAAGAGAATAGGATTACTAGCTTCAATATGCTCC
GCTGTATATCTCAGGGAGAGAAGATTCACAATTTTCGATTAGCTCCACTATTGCTTAGGGAGATA
AGATTCTGGATTTATTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACTTGATGCGATCTAC
TCTACTGTAACATTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATATCAGGCAAA
TAGGATTACTGGCTTAAATTTGCTCCG
Found at i:5492 original size:43 final size:43
Alignment explanation
Indices: 5390--5537 Score: 138
Period size: 43 Copynumber: 3.4 Consensus size: 43
5380 CTTTATTTTC
* * * * * * *
5390 ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTTGCTTCA
1 ATCTGCTCCGCTGTAATCTCA-GGAGATAGGATAACTGGCGTCA
* * * * *
5434 ATTTTCTCTGC-GTAATCTCTGAGAGATAGGATTACTGG-GTCA
1 ATCTGCTCCGCTGTAATCTCAG-GAGATAGGATAACTGGCGTCA
* *
5476 ATCTGCTCCGCTGTAATCCCAGGAGATAGGATAACTGGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGAGATAGGATAACTGGCGTCA
5519 ATCTGCTCCGCTGTAATCT
1 ATCTGCTCCGCTGTAATCT
5538 TATGGAGAAA
Statistics
Matches: 83, Mismatches: 18, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 27 0.33
43 49 0.59
44 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (43 bp):
ATCTGCTCCGCTGTAATCTCAGGAGATAGGATAACTGGCGTCA
Found at i:5857 original size:173 final size:176
Alignment explanation
Indices: 5580--5944 Score: 513
Period size: 173 Copynumber: 2.1 Consensus size: 176
5570 TCCACTATTG
* * *
5580 CTCAGGGAGACAAGATCTGGAACTATCGGTCTATTCCACACTGTAATCTCAGAGAGATAAGACCT
1 CTCAGGGAGATAAGATCTGAAACTATCGGTCTATTCCACACTATAATCTCAGAGAGATAAGACCT
* * * *
5645 GATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTA
66 GATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACTATA
* * *
5710 ATCTTAGGGAGATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
131 ATCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCACTGTAAT
* * *
5756 CTCAGGGAGATAAGATCTGAAATTCTCCGGTCT-TT-C-CACTATAATCTCAGGGAGATAAGACC
1 CTCAGGGAGATAAGATCTGAAACTAT-CGGTCTATTCCACACTATAATCTCAGAGAGATAAGACC
* *
5818 TGATGC-ATCTACTCTACTGTAACTTAAGATAGATAAGATCCTTTATTCTAATCCGTTCCACTAT
65 TGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACTAT
* * * *
5882 AATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTACTGTAAT
130 AATCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCACTGTAAT
*
5929 CTCAGGGAGCTAAGAT
1 CTCAGGGAGATAAGAT
5945 TCACCATTTT
Statistics
Matches: 168, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
173 107 0.64
174 30 0.18
175 1 0.01
176 24 0.14
177 6 0.04
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (176 bp):
CTCAGGGAGATAAGATCTGAAACTATCGGTCTATTCCACACTATAATCTCAGAGAGATAAGACCT
GATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACTATA
ATCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCACTGTAAT
Found at i:6021 original size:216 final size:211
Alignment explanation
Indices: 5761--6365 Score: 785
Period size: 216 Copynumber: 2.8 Consensus size: 211
5751 GTAATCTCAG
* * *
5761 GGAGATAAGATCTGAAATTCTCCGGTCT-TTCCACTATAATCTCAGGGAGATAAGACCTGATGC-
1 GGAGATAAGATCTGGAATTCTTCGGTCTATTCCACT-GAATCTCAGGGAGATAAGACCTGATGCA
*
5824 ATCTACTCTACTGTAACTTAAGATAGATAAGATCCTTTATTCTAATCCGTTCCACTATAATCTCA
65 ATCTACTCTACTGTAACTT-AGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTATAATCTCA
* ** *
5889 GGGAAATAGGATTGCTGGCTTCAATCTGCTCTACTGTAATCTCAGGGAGCTAAGATTCACCATTT
129 GGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG--AAGATTCA--AATT
5954 TCGATAGCTCCACTATTGCTTA
190 TCGATAGCTCCACTATTGCTTA
* *
5976 GGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTTAGACCTGATGCA
1 GGAGATAAGATCTGGAATTCTTCGGTCTATTCCACT-GAATCTCAGGGAGATAAGACCTGATGCA
* * * * *
6041 ATCTACTCTACTGTAATTTCAGAGAGATAAGATCCATTATTTTAATCTGTTTCCACTATAATCTA
65 ATCTACTCTACTGTAACTT-AGAGAGATAAGATCCTTTATTCTAATCCG-TTCCACTATAATCTC
6106 AGGGAAAT--GATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGAGAGAAGATTCAAATTTC
128 AGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGG-GAGAAGATTCAAATTTC
* *
6169 GTTTGCTCCACTATTGCTTA
192 GATAGCTCCACTATTGCTTA
* * * * *
6189 GGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTATATCAGGGAGATAAGACCTGATGCGA
1 GGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGAATCTCAGGGAGATAAGACCTGATGCAA
* * * *
6254 TCTACTCTACTAT-ACATTAGAGAGATAAGATCCTTTAGTTTCT--TTCGCTCCACTGTAATCTC
66 TCTACTCTACTGTAAC-TTAGAGAGATAAGATCCTTTA--TTCTAATCCGTTCCACTATAATCTC
* *
6316 AGGCAAATAGGATTACTGGCTT-AATTTGCTCCGCTGTAATCTCAGGGAGA
128 AGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
6366 TAGGATTACT
Statistics
Matches: 344, Mismatches: 37, Indels: 23
0.85 0.09 0.06
Matches are distributed among these distances:
210 23 0.07
211 44 0.13
212 50 0.15
213 60 0.17
215 34 0.10
216 65 0.19
217 46 0.13
218 22 0.06
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (211 bp):
GGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGAATCTCAGGGAGATAAGACCTGATGCAA
TCTACTCTACTGTAACTTAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTATAATCTCAGG
GAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAAGATTCAAATTTCGATA
GCTCCACTATTGCTTA
Found at i:6361 original size:43 final size:44
Alignment explanation
Indices: 6300--6401 Score: 170
Period size: 43 Copynumber: 2.3 Consensus size: 44
6290 AGTTTCTTTC
*
6300 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTT-AATTT
1 GCTCCGCTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTT
* *
6343 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTT
6387 GCTCCGCTGTAATCT
1 GCTCCGCTGTAATCT
6402 TTTGGAGAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 35 0.64
44 20 0.36
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTT
Found at i:6828 original size:44 final size:43
Alignment explanation
Indices: 6773--6877 Score: 129
Period size: 44 Copynumber: 2.4 Consensus size: 43
6763 TCTTTATTTT
*
6773 AATCCGCTCCACTGTAATATCAGGCAAATAGGATTACTGGCTTC
1 AATCTGCTCCACTGTAATATCAGGCAAATAGGA-TACTGGCTTC
* * * * * *
6817 AATTTGCTCCACTGTAATCTTAGGGAGATAGGATACTGGCTTT
1 AATCTGCTCCACTGTAATATCAGGCAAATAGGATACTGGCTTC
*
6860 AATCTGCTCCGCTGTAAT
1 AATCTGCTCCACTGTAAT
6878 CTTTTGGAGA
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
43 25 0.48
44 27 0.52
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (43 bp):
AATCTGCTCCACTGTAATATCAGGCAAATAGGATACTGGCTTC
Found at i:6844 original size:218 final size:218
Alignment explanation
Indices: 6343--6846 Score: 631
Period size: 219 Copynumber: 2.3 Consensus size: 218
6333 GGCTTAATTT
* * **
6343 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGA
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGA
* *
6408 GA-AAGATTCACCATCTTCGATCTGCTCCCTATTGTTCAGGAAGACAAGATCTGGAACTCTTCGG
66 GATAAGATTCACCATCTTCGATCTGCTCCCTATTGTTCAGGAAGACAAGATCTGGAACTATTCAG
*
6472 CCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
131 CCTATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
*
6537 GATAATATCCTTTATTTTAATCC
196 GATAAGATCCTTTATTTTAATCC
* * * * * * * *
6560 GTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGG
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATTTGCTCCGCTGTAATCTTAGGG
* * ** * * **
6624 AGATCAGATTCACCATTTTTTAT-TAGCTCCACTATTGCTT-AGGGAGATAAGATCTGGATTTAT
65 AGATAAGATTCACCATCTTCGATCT-GCTCC-CTATTG-TTCAGGAAGACAAGATCTGGAACTAT
** * * * * *
6687 TCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTA
127 TCAGCCTATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCA
6752 GAGAGATAAGAT-CTTTATTTTAATCC
192 GAGAGATAAGATCCTTTATTTTAATCC
* * *
6778 GCTCCACTGTAATATCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCACTGTAATCTTAGGGA
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGA
6843 GATA
66 GATA
6847 GGATACTGGC
Statistics
Matches: 238, Mismatches: 43, Indels: 11
0.82 0.15 0.04
Matches are distributed among these distances:
217 55 0.23
218 90 0.38
219 91 0.38
220 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (218 bp):
GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGA
GATAAGATTCACCATCTTCGATCTGCTCCCTATTGTTCAGGAAGACAAGATCTGGAACTATTCAG
CCTATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
GATAAGATCCTTTATTTTAATCC
Found at i:6868 original size:43 final size:44
Alignment explanation
Indices: 6770--6894 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 44
6760 AGATCTTTAT
* * * * *
6770 TTTAATCCGCTCCACTGTAATATCAGGCAAATAGGATTACTGGC
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
* *
6814 TTCAATTTGCTCCACTGTAATCTTAGGGAGATAGGA-TACTGGC
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
* ** *
6857 TTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAGATT
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATT
6895 CACCGTCTTC
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
43 37 0.55
44 30 0.45
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
Found at i:7133 original size:481 final size:483
Alignment explanation
Indices: 5874--7362 Score: 2178
Period size: 481 Copynumber: 3.1 Consensus size: 483
5864 TCTAATCCGT
* * * ** *** *
5874 TCCACTATAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTACTGTAATCTCAGGGAGC
1 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTTTGGAGA
* * * * *
5939 TAAGATTCACCATTTTCGAT-AGCTCCACTATTGCTTAGG-AGATAAGATCTGGAATTCTTCGGT
66 TAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGT
* * * * * *
6002 CTATTCCACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAATTTCAGAGAG
131 CTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
* * * * * * *
6067 ATAAGATCCA-TTATTTTAATCTGTTTCCACTATAATCTAAGGG-AA-ATGATTACTGGC-TTCA
196 ATAATATTCATTTATTTTAATCCG-TTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-A
* * * * **
6128 ATCTGCTCCGCTGTAATCTCAGGAGAGA--AGATTCA-AATTTCGT-TT-GCTCCACTATTGCTT
259 ATCTGCTCTGTTATAATCTCAGG-GAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTT
* * * *
6188 A-GGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTATAT--CAGGGAGATAAGACCTGAT
323 AGGGAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTA-ATCGCATGGAGATAAGACCTGAT
* * * * * *
6250 GCGATCTACTCTACTAT-ACATTAGAGAGATAAGATCCTTTAGTTTCTTTCGCTCCACTGTAATC
387 GCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATA
6314 TCAGGCAAATAGGATTACTGGCTT-AATTTGC
452 TCAGGCAAATAGGATTACTGGCTTCAATTTGC
* *
6345 TCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTTTGGAGA
* *
6410 -AAGATTCACCATCTTCGATCTGCTCC-CTATTGTTCAGGAAGACAAGATCTGGAACTCTTCGGC
66 TAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGT
*
6473 CTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
131 CTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
*
6538 ATAATA-TCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAAT
196 ATAATATTCATTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAAT
6602 CTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGG
261 CTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGG
6667 GAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGA
326 GAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGA
*
6732 TCTACTCTACTGTAACTTTAGAGAGATAAGAT-CTTTATTTTAATCCGCTCCACTGTAATATCAG
391 TCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATATCAG
6796 GCAAATAGGATTACTGGCTTCAATTTGC
456 GCAAATAGGATTACTGGCTTCAATTTGC
* *
6824 TCCACTGTAATCTTAGGGAGATAGGA-TACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTTTGGAGA
* *
6888 TAAGATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGT
66 TAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGT
*
6953 CTATTCCACAGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
131 CTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
*
7018 ATAATATTCATTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAAT
196 ATAATATTCATTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAAT
7083 CTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGG
261 CTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGG
7148 GAGATAAGATCTGGATTTATTCAGTGTATTTCCGCT-TAATCGCATGGAGATAAGACCTGATGCG
326 GAGATAAGATCTGGATTTATTCAGTGTA-TTCCGCTGTAATCGCATGGAGATAAGACCTGATGCG
* * *
7212 ATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATATTA
390 ATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATATCA
* * *
7277 GGGAAATAGGATTACTTGCTTCAATTTTC
455 GGCAAATAGGATTACTGGCTTCAATTTGC
* * *
7306 TCCGCTGTAATCTCAGGGAGAATAGG-TTACTGGGTTTAATCTGCTCCGCTGTAATCT
1 TCCACTGTAATCTCAGGGAG-ATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCT
7363 CACGGAGATA
Statistics
Matches: 923, Mismatches: 72, Indels: 34
0.90 0.07 0.03
Matches are distributed among these distances:
470 46 0.05
471 161 0.17
472 31 0.03
473 9 0.01
474 5 0.01
475 2 0.00
476 18 0.02
477 36 0.04
478 117 0.13
479 73 0.08
480 103 0.11
481 210 0.23
482 78 0.08
483 34 0.04
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (483 bp):
TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTTTGGAGA
TAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGT
CTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
ATAATATTCATTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAAT
CTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGG
GAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGA
TCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATATCAG
GCAAATAGGATTACTGGCTTCAATTTGC
Found at i:7159 original size:220 final size:218
Alignment explanation
Indices: 6822--7326 Score: 559
Period size: 220 Copynumber: 2.3 Consensus size: 218
6812 GCTTCAATTT
* * * * ***
6822 GCTCCACTGTAATCTTAGGGAGATAGGA-TACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGA
1 GCTCAACTGTAATCTTAGGGA-ATAGGATTACTAGCATTAATCTGCTCCGCTATAATCTCAGGGA
* * * *
6886 GATAAGATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCG
65 GATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTCA
*
6951 GTCTA-TTCCACAGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
130 GTCTATTTCCAC-GTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
*
7015 GAGATAATATTCATTTATTTTAATCC
194 GAGATAAGA-TCATTTATTTTAATCC
* * * *
7041 GTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCTCTGTTATAATCTCAGGGA
1 GCTCAACTGTAATCTTAGGG-AATAGGATTACTAGCATTAATCTGCTCCGCTATAATCTCAGGGA
* * ** * * * **
7106 GATCAGATTCACCATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTC
65 GATAAGATTCACCATCTTCGATCT-GCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTC
* * * *
7170 AGTGTATTTCCGCTTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGA
129 AGTCTATTTCCACGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
* * *
7235 GAGATAAGATCCTTTATTTTCATCT
194 GAGATAAGATCATTTATTTTAATCC
* * * * * * *
7260 GCTCCACTATAATATTAGGGAAATAGGATTACTTGC-TTCAATTTTCTCCGCTGTAATCTCAGGG
1 GCTCAACTGTAATCTTAGGG-AATAGGATTACTAGCATT-AATCTGCTCCGCTATAATCTCAGGG
7324 AGA
64 AGA
7327 ATAGGTTACT
Statistics
Matches: 236, Mismatches: 45, Indels: 10
0.81 0.15 0.03
Matches are distributed among these distances:
218 2 0.01
219 89 0.38
220 140 0.59
221 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (218 bp):
GCTCAACTGTAATCTTAGGGAATAGGATTACTAGCATTAATCTGCTCCGCTATAATCTCAGGGAG
ATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTCAG
TCTATTTCCACGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
GATAAGATCATTTATTTTAATCC
Found at i:7353 original size:44 final size:45
Alignment explanation
Indices: 7256--7399 Score: 177
Period size: 44 Copynumber: 3.3 Consensus size: 45
7246 CTTTATTTTC
* * * * *
7256 ATCTGCTCCACTATAATATTAGGGA-AATAGGATTACTTGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGAATAGGATTACTGGCTTCA
* * * *
7300 ATTTTCTCCGCTGTAATCTCAGGGAGAATAGG-TTACTGGGTTTA
1 ATCTGCTCCGCTGTAATCTCAGGGAGAATAGGATTACTGGCTTCA
*
7344 ATCTGCTCCGCTGTAATCTCACGGAG-ATAGGATTACTGGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGAATAGGATTACTGGCTTCA
7388 ATCTGCTCCGCT
1 ATCTGCTCCGCT
7400 AATCTTATGG
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
43 5 0.06
44 73 0.87
45 6 0.07
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (45 bp):
ATCTGCTCCGCTGTAATCTCAGGGAGAATAGGATTACTGGCTTCA
Found at i:7814 original size:174 final size:179
Alignment explanation
Indices: 7447--7815 Score: 532
Period size: 174 Copynumber: 2.1 Consensus size: 179
7437 TCCACTATTG
* * * *
7447 CTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAATCTGAGGGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTGAGGGAGATAAGACCAG
* * *
7512 ATGCGATCTACTCTACTGTAACTTCAGAGAGGTAAGATCCTTTATATTTAATAATTCGCTCCACC
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATATTTAATAATCCGCTCCACC
* * *
7577 GTAATCTTAGGGAGATAGGATTACTAGCTTCAATCAGCTCCGCTGTGAT
131 GTAATCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
* * *
7626 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCT-CGGGAGATAAGACCAG
1 CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTGAGGGAGATAAGACCAG
* * *
7690 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCC-TT-TA-TT-CTAATCCGTTCCACT
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATATTTAATAATCCGCTCCACC
* * *
7751 GTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAAT
131 GTAATCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
7800 CTCAGGGAGATAAGAT
1 CTCAGGGAGATAAGAT
7816 TCACCGTTTC
Statistics
Matches: 171, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
174 70 0.41
175 2 0.01
176 2 0.01
177 2 0.01
178 52 0.30
179 43 0.25
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (179 bp):
CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTGAGGGAGATAAGACCAG
ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATATTTAATAATCCGCTCCACC
GTAATCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
Found at i:7949 original size:701 final size:692
Alignment explanation
Indices: 175--10831 Score: 4338
Period size: 701 Copynumber: 15.3 Consensus size: 692
165 CTGTAATCTC
* * * * ** *
175 AGGGAGATAAGATCTGAAATT-CTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGATG
* * * * * *
239 CGATCTACTCTACTGTAACTTAAGAGATAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAAT
66 CAATCTACTCTACTGTAACTTCAGAG--AGATAAGATCCTTTATTTTAATCTGCTCCACTATAAT
* * * * *
304 CTCAGGGAAATA-GATTGCTGGC-TCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCCAC
129 ATAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATT-CAC
* * * *
367 CATTTTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGAATCTGGAATTCTTCGGTCTATTCAC
193 AATTTTCAATCT-GCTCCACTAATGCTTAGGGAGATAAG-ATCTGG---TCTTCAGTCTATTC-C
* * * * * *
431 TG-GAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAA-TTTCAGAGAGATAAGAT
252 -GCTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATT-AGAGAGATAAGAT
* * * * * * *
494 CCATTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCG
315 -CTTTA-TTTCATC-GCTCCACTGTAATCTCAGGCAAATAGGA-TACTGGCTTCAATTTGCTCCG
* * **** * * * **
559 CTGTAATCTCAGGGAGAGAAAGATTCACAATTTTC-GTTTGCTCCAC--TATTGCTTAGGGAGAT
376 CTGTAATCTCAGGGAGA-TAGGATT-ACTGGCTTCAATTTGCTCCGCTGTAAT-CTTTTGGAGAT
* ** ** * * * * * * *
621 AAGATCTGGA-TTTCTTC-AGTCTATTCCACTGTAATATCAGGGAGATAAGACCT-G-A---TGC
438 AAGAT-T-CACCATCTTCGA-TCTGCTCCACTAT-GTCTCAGGAAGACAAGATCTGGAACTCTTC
** * * * * * * * ** * * *
679 GATCTACTCTACTA-TAA-CATTAGAGAGATAAGATCCTTTATTTCCCTTTCGCTCCACTGTAA-
499 GGCCTATTCCAC-AGTAATC-TCAGGGAAATAAGA-CC-TGA-TGCGATCT-ACTCTACTGTAAC
* * *** * ** * * *
741 TTCAG-GCAAATAGGAT-TAC-TGGCTTAAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTA
558 TTCAGAG-AGATA--ATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTA
* * * *** *
803 CTGGC-TTCAATTTGCTCCGCTATAATCTTTTGGAGATAAGATTCACCATCTTCGATCT-GCTCC
620 CTAGCATT-AATCTGCTCTGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TAGCTCC
*
866 CCTATTG-TT
683 ACTATTGCTT
* * * * * * * * * * *
875 CAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAAT-AGAACCTGA
1 -AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAG-ACCTGA
* * * * *
939 TGCGATCTACTC-ACTGTAACTTCAGAGAGAT-ATATCCTTTATTTTAATCCGTTCCACTGTAAT
64 TGCAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAAT
* * * * * * * **
1002 CTCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGGAGATTAGATTCAC
129 ATAAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCAC
* ** * * *
1066 CATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTCAGTTTATTCCGC
193 AATTTTCAATCT-GCTCCACTAATGCTTAGGGAGATAAGATCTGG---TCTTCAGTCTATTCCGC
* * *
1130 TGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCC
254 --TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATTAGAGAGATAAGAT-C
* * * * * * *
1195 TTTATTTTATCTGCTCTACTATAATATCAGGGAAATAGGATTACT-TCTTCAATTTTCTCCGCTG
316 TTTATTTCATC-GCTCCACTGTAATCTCAGGCAAATAGGA-TACTGGCTTCAATTTGCTCCGCTG
* * **** *
1259 TAATATCTCAGAGAGATAGGATTACTGG--TCAATCTGCT-CGCTGTAATCCCAGGGAAGATAGG
379 T-A-ATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGG-AGATAAG
*** * * * * * * * **
1321 ATT-ACTGGCTTCAATCTGCTCCGCTGTAATCTTATGG-AGAAAAGAT-T--CACTGTCTTCGAT
441 ATTCACCATCTTCGATCTGCTCCACTAT-GTCTCA-GGAAGACAAGATCTGGAAC--TCTTCGGC
** * * * * * * *
1381 CTGCTCCAC--TATTCGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTA-T-TCCTGTAA-TC
502 CTATTCCACAGTAAT--CTCAGGGAAATAAGACCT-G----ATGCGATCTACTCTACTGTAACT-
* * * * *** * * * * * * *
1441 TCAGATATA-AAGA-CC-TGA-TGCGAT-C--TACTCTCTAA-CTCAGAGAGATAAGATCCT-TT
559 TCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGAT--TACT
** ** * * * * * *
1497 A-TTTTAAT-TCGCTCCACTGTAATCTTAGGGAGATAAGATTCTAGC---TTCAATCAGCTCCGC
622 AGCATTAATCT-GCTCTGCTATAATCTCAGGGAGATAAGATTC-ACCATTTTCGATTAGCTCCAC
* *
1557 TGTAAT-CTC
685 --TATTGCTT
* * * * ** *
1566 AGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGATG
* * * * * *
1631 CGATCTA-TCTACTGTAACTTAAGAGAGATAAGAT-CTTTATTCTAATCTGTTCCACTGTAATCT
66 CAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATAT
* * * * * *
1694 CAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGCAGATAAGATTCACCAT
131 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAAT
* * * *
1759 TTTCGAT-TAGCTCCACTATTGCTT-GGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGA
196 TTTCAATCT-GCTCCACTAATGCTTAGGGAGATAAGATCTGG---TCTTCAGTCTATTCCGCT-A
* * * * *
1822 ATCTCAGGGAGTTTAGAACCTGATGCAATCTACTCTACTGTAA-TTTCAGAGAGAT-AGATCCTT
256 ATCTCAGGGAGATAAG-ACCTGATGCGATCTACTCTACTATAACATT-AGAGAGATAAGAT-CTT
* * * * * *
1885 TATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTTACTGGCTTCAATCTGCTCCGCTG
318 TA-TTTCATC-GCTCCACTGTAATCTCAGGCAAATAGGA--TACTGGCTTCAATTTGCTCCGCTG
* * **** * * * **
1950 TAATCTCAGGGAGAGAAGATTCAACAATTTTCGATTTGCTCCAC--TATTGCTTAGGGAGATAAG
379 TAATCTCAGGGAGATAGGATT--ACTGGCTTCAATTTGCTCCGCTGTAAT-CTTTTGGAGATAAG
* ** ** * * * * * * * **
2013 ATCTGGA-TTTCTTC-AGTCTATTCCACTGTAATATCAGGGAGATAAGACCT-G-A---TGCGAT
441 AT-T-CACCATCTTCGA-TCTGCTCCACTAT-GTCTCAGGAAGACAAGATCTGGAACTCTTCGGC
* * * * * * * * ** *
2071 CTACTCTACTGTAA-CATTAGAGAGATAAGATCCTTTATTTTC-ATCCGCTCCACTGTAA-TCTC
502 CTATTCCACAGTAATC-TCAGGGAAATAAGA-CC-TGA--TGCGATCTACTCTACTGTAACT-TC
* * *** * ** * * *
2133 AG-GCAAATAGGAT-TAC-TGGCTTAAATTTGCTCCACTGTAATCTCA-GGAGATAGGATTACTG
561 AGAG-AGATA--ATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTA
* * * *** *
2194 GC-TTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTCACCATCTTCGATCT-GCTCCACT
623 GCATT-AATCTGCTCTGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TAGCTCCACT
2257 ATTG-TT
686 ATTGCTT
* * * * * * * * * * *
2263 CAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGAT
1 -AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGAT
* * * * *
2328 GCGATCTACTCTAACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAAT
65 GCAATCTACTCT-ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAAT
* * * * * *
2393 CTCAGGGTAATAGGATTACTAGCATT-AATATGCTCTG-T-TATATCTCAGGGAGA-ACAGATTC
129 ATAAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTGTA-ATCTCAGGGAGAGA-AGATTC
* ** * * *
2454 ACCATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATTCTGGATTTATTCAGTTTATTC
191 ACAATTTTCAATCT-GCTCCACTAATGCTTAGGGAGATAAGA-TCTGG---TCTTCAGTCTATTC
* *
2518 CGCTGTAATCTCATGGAG-TAAGACCTGATGCGATCTACTCTACT-TAACTTTAGAGAGATAAGA
251 CGC--TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATTAGAGAGATAAGA
* * * * *
2581 TCCTTTATTTTCATCTGCTCCACTATAATATCAGGGAAATAGGATTACTTGCTTCAATTTTCTCC
314 T-CTTTA-TTTCATC-GCTCCACTGTAATCTCAGGCAAATAGGA-TACTGGCTTCAATTTGCTCC
* * * * **** *
2646 GCTGTAATCTCAGAGAGATAGGATTACTGGGTACAATCTGCTCCGCTGTAATCCCAGGGAGATAG
375 GCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAA
*** * * * * * * ** *
2711 GATT-ACTGGCTTCAATCTGCTCCGCTGTAATCTTATGG-AGAAAAG-T-T-TCACTGTCTTCGA
440 GATTCACCATCTTCGATCTGCTCCACTAT-GTCTCA-GGAAGACAAGATCTGGAAC--TCTTCGG
* ** * * * * * * * *
2771 TCTGCTCCAC--TATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAA-TC
501 CCTATTCCACAGTAAT-CTCAGGGAAATAAGACCT-G----ATGCGATCTACTCTACTGTAACT-
* * *** *** * * * * *
2833 TCAGAGAGATAAGA-CC-TGA-TGCGATCTACTCTA-TGTAA-CTTCAGAGAGATAAGATCCT-T
559 TCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATC-TCAGGGAAATAGGAT--TAC
** ** * * * * ** * * *
2892 TA-TTTTAAT-TCGCTCCACTTTAATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGCTCCGC
621 TAGCATTAATCT-GCTCTGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCAC
* *
2954 TGTAAT-CTC
685 --TATTGCTT
** * * * ** *
2963 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGATG
* * * * * * *
3028 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCT
66 CAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATAT
* * * * *
3093 CAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCAT
131 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAAT
* * * * *
3158 TTTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGAATTCTT-GGTCTATTCCACTGGA
196 TTTCAATCT-GCTCCACTAATGCTTAGGGAGATAAGATCTG--GTCTTCAGTCTATTCCGCT--A
* * * * **
3221 ATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAATTTTAGAGAGATAAGATCCTTTA
256 ATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATTAGAGAGATAAGAT-CTTTA
* * * * * * *
3286 TTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGATTCAAATCTGCTCCGCTGT-
320 -TTTCATC-GCTCCACTGTAATCTCAGGCAAATAGGA-TACTGGCTTC-AATTTGCTCCGCTGTA
* * **** * * * **
3350 ATCTCAGGGAGAGAAGATTCACAATTTTCGATTTGCTCCAC--TATTGCTTAGGGAGATAAGATC
381 ATCTCAGGGAGATAGGATT-ACTGGCTTCAATTTGCTCCGCTGTAAT-CTTTTGGAGATAAGAT-
* ** ** * * * * * * **
3413 TGGA-TTTCTTC-AGTCTATTCCACTGTAATATCAGG-GGATAAGACCT-G-A----TCGATCTA
443 T-CACCATCTTCGA-TCTGCTCCACTAT-GTCTCAGGAAGACAAGATCTGGAACTCTTCGGCCTA
* * * * * * * * * *
3469 CTCTACTGTAA-CATTAGAGAGATAAGATCCTTTATTTTC-ATGC-GCTCCACTGTAA-TTCAG-
505 TTCCACAGTAATC-TCAGGGAAATAAGA-CC-TGA--TGCGAT-CTACTCTACTGTAACTTCAGA
* * *** * ** * ** * * *
3529 GCAAATAGGAT-TAC-TGGCTTAAATTTGCTCTGCTGTAATCTCAAGGAGATAGGATTACTGGC-
564 G-AGATA--ATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCA
* * * *** *
3591 TTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTCACCATCTTCGATCT-GCTCCACTATT
626 TT-AATCTGCTCTGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TAGCTCCACTATT
3655 G-TT
689 GCTT
* * * * * * * * * * *
3658 CAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGAT
1 -AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGAT
* * * * * *
3723 GCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTA-TTTAATCCGTTCCACTGTAATC
65 GCAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATA
* * * * * * * ** *
3787 TCAGGGTAATAGGATTACTAGCATT-AATATGCTCTGTTATAATCTCAGGGAGATCAGATTCACC
130 TAAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACA
** * * * *
3851 ATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTCAATTTATTCCGCT
194 ATTTTCAATCT-GCTCCACTAATGCTTAGGGAGATAAGATCTGG---TCTTCAGTCTATTCCGC-
* * * *
3915 GTAATCTCATGGAGATAGGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCT
254 -TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATTAGAGAGATAAGAT-CT
* * * * * *
3980 TTATTTTCATCTGCTCCACTATAATATCAGGGAAATAGGATTACTTGCTTCAATTTTCTCTGCTG
317 TTA-TTTCATC-GCTCCACTGTAATCTCAGGCAAATAGGA-TACTGGCTTCAATTTGCTCCGCTG
* * * **** *
4045 TAATCTCAGAGAGATAGGATTACTGGGTTCAATCTGCTCCGCTGTAATCCCAGGGAGATAGGATT
379 TAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATT
*** * * * * * **
4110 -ACTGGCTTCAATCTGCTCCGCTGTAAT-TCTTATGG-AGAAAAGAT-T--CACTGTCTT-GATC
444 CACCATCTTCGATCTGCTCCAC--T-ATGTCTCA-GGAAGACAAGATCTGGAAC--TCTTCGGCC
** * * * * * * * *
4168 TGCTCCAC--TATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAA-TCTC
503 TATTCCACAGTAAT-CTCAGGGAAATAAGACCT-G----ATGCGATCTACTCTACTGTAACT-TC
* * *** *** * * * * *
4230 AGAGAGATAAGA-CC-TGA-TGCGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA
561 AGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATC-TCAGGGAAATAGGAT--TACTA
** * ** * * * * ** * * *
4290 -TTTTAAT-TCACTCCACTGTAATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGCTCCGCTG
623 GCATTAATCT-GCTCTGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCAC--
* *
4352 TAAT-CTC
685 TATTGCTT
* * * * * ** *
4359 AGGGAGATAAGATCTGAAATTCTCCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGATG
* * * * * * *
4424 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCT
66 CAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATAT
* * * * *
4489 CAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCAT
131 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAAT
* * * *
4554 TTTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTAG
196 TTTCAATCT-GCTCCACTAATGCTTAGGGAGATAAGATCTGG---TCTTCAGTCTATTCCGCT--
* * * *
4618 AATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAA-ATTCAGAGAGATAAGATCCTT
255 AATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATT-AGAGAGATAAGAT-CTT
* ** * * *
4682 TATTTTAATCTG-TTTACTATAATCT-AAG-AGAATAGGATTACTGGCTTCAATCTGCTCCGCTG
318 TA-TTTCATC-GCTCCACTGTAATCTCAGGCA-AATAGGA-TACTGGCTTCAATTTGCTCCGCTG
* * * **** * * * **
4744 TATATCTTAGGGAGAGAAGATTCACAATTTTCGATTTGCTCCAC--TATTGCTTAGGGAGATAAG
379 TA-ATCTCAGGGAGATAGGATT-ACTGGCTTCAATTTGCTCCGCTGTAAT-CTTTTGGAGATAAG
*** ** * * * * * * * **
4807 ATTCTGGATTTCTTC-AGTCTATTCCACTGTAATATCAGGGAGATAAGA-CTTG-A---TGCGAT
441 ATTCACCA--TCTTCGA-TCTGCTCCACTAT-GTCTCAGGAAGACAAGATCTGGAACTCTTCGGC
* * * * * * * ** *
4866 CTACTCTACTGTAA-CATTAGAGAGATAAGATCCTTTAT--TTTCTTACGCTCCACTGTAA-TCT
502 CTATTCCACAGTAATC-TCAGGGAAATAAGA-CC-TGATGCGATC-TA--CTCTACTGTAACT-T
* * *** * ** * * *
4927 CAG-GCAAATAGGAT-TAC-TGGCTTAAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACT
560 CAGAG-AGATA--ATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACT
* * * * *** *
4989 GGC-TTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTCACCATCTTCGATCT-GCTCCAC
622 AGCATT-AATCTGCTCTGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TAGCTCCAC
5052 TATTG-TT
685 TATTGCTT
* * * * * * * * * * *
5059 CAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGAT
1 -AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGAT
* * * * * * *
5124 GCGATACTACT-AACTGTAACTTTAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAAT
65 GCAAT-CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAAT
* * * * * * * * **
5188 CTCAGGGTAATAGGATTACTAGCATT-AATATGCTCTGTTATAATCTCAGGGAGATCAGATTCAC
129 ATAAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCAC
* ** * * * *
5252 CATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATTTGGATTTATTCAGTTTATTCCGC
193 AATTTTCAATCT-GCTCCACTAATGCTTAGGGAGATAAGATCTGG---TCTTCAGTCTATTCCGC
* * * *
5316 TGTAATCTCATGGAGATAAGAACTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCC
254 --TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATTAGAGAGATAAGAT-C
* * * * * *
5381 TTTATTTTCATCTGCTCCACTATAATATCAGGGAAATAGGATTACTTGCTTCAATTTTCTCTGC-
316 TTTA-TTTCATC-GCTCCACTGTAATCTCAGGCAAATAGGA-TACTGGCTTCAATTTGCTCCGCT
* * * * *** *
5445 GTAATCTCTGAGAGATAGGATTACTGG-GTCAATCTGCTCCGCTGTAATC-CCAGGAGATAGGA-
378 GTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGAT
* *** * * * * * * * * **
5507 TAACTGGCTTCAATCTGCTCCGCTGTAATCTTATGG-AGAAAAGAT-T--CACTGTCTTTGATCT
443 TCACCATCTTCGATCTGCTCCACTAT-GTCTCA-GGAAGACAAGATCTGGAAC--TCTTCGGCCT
** * * * * * * * *
5568 GCTCCAC--TATTGCTCAGGGAGACAAGATCTGGAACTATCGGTCTATTCCACACTGTAA-TCTC
504 ATTCCACAGTAAT-CTCAGGGAAATAAGACCT-G-A-T-GCGATCTACT-C-TACTGTAACT-TC
* * *** *** * * * * *
5630 AGAGAGATAAGA-CC-TGA-TGCGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA
561 AGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATC-TCAGGGAAATAGGAT--TACTA
** ** * * * * ** * * *
5690 -TTTTAAT-TCGCTCCACTGTAATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGCTCCGCTG
623 GCATTAATCT-GCTCTGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCAC--
* *
5752 TAAT-CTC
685 TATTGCTT
* * * * * ** *
5759 AGGGAGATAAGATCTGAAATTCTCCGGTCT-TTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGATG
* * * * * *
5823 C-ATCTACTCTACTGTAACTTAAGATAGATAAGATCCTTTATTCTAATCCGTTCCACTATAATCT
66 CAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATAT
* * ** ** *
5887 CAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTACTGTAATCTCAGGGAGCTAAGATTCACCAT
131 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAAT
* * * * *
5952 TTTCGAT-AGCTCCACTATTGCTTA-GGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGGA
196 TTTCAATCTGCTCCACTAATGCTTAGGGAGATAAGATCTGG---TCTTCAGTCTATTCCGCT--A
* * * * * *
6015 ATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAA-TTTCAGAGAGATAAGATCCATT
256 ATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATT-AGAGAGATAAGAT-CTTT
* * * * * *
6079 ATTTTAATCTGTTTCCACTATAATCTAAGGGAAAT--GATTACTGGCTTCAATCTGCTCCGCTGT
319 A-TTTCATC-G-CTCCACTGTAATCTCAGGCAAATAGGA-TACTGGCTTCAATTTGCTCCGCTGT
**** * * * *
6142 AATCTCAGGAGAGA-A-GATT-CAAATTTC-GTTTGCTCCAC--TATTGC-TTAGGAGATAAGAT
380 AATCTCAGG-GAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAAT-CTTTTGGAGATAAGAT
* ** ** * * * * * * * **
6200 CTGGA-TTTCTTC-AGTCTATTCCACTGTATATCAGGGAGATAAGACCT-G-A---TGCGATCTA
443 -T-CACCATCTTCGA-TCTGCTCCACTATGTCTCAGGAAGACAAGATCTGGAACTCTTCGGCCTA
* * * * * * ** * *
6258 CTCTACTA-TACAT-T-AGAGAGATAAGATCCTTTAGTTTCTTTC-GCTCCACTGTAA-TCTCAG
505 TTCCAC-AGTA-ATCTCAGGGAAATAAGA-CC--T-GATGCGATCTACTCTACTGTAACT-TCAG
* * *** ** * * * *
6318 -GCAAATAGGAT-TAC--TGGCTTAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGC
563 AG-AGATA--ATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGC
* * * *** *
6379 -TTCAATTTGCTCCGCTGTAATCTTTTGGAGA-AAGATTCACCATCTTCGATCT-GCTCC-CTAT
625 ATT-AATCTGCTCTGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TAGCTCCACTAT
6440 TG-TT
688 TGCTT
* * * * * * * * * * *
6444 CAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGAT
1 -AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGAT
* * * * * *
6509 GCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATC
65 GCAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATA
* * * * * * ** *
6574 TCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGGAGATCAGATTCACC
130 TAAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACA
** * * *
6638 ATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTCAGTGTATTCCGCT
194 ATTTTCAATCT-GCTCCACTAATGCTTAGGGAGATAAGATCTGG---TCTTCAGTCTATTCCGC-
* * * *
6702 GTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTT
254 -TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATTAGAGAGATAAGATCTT
* * *
6767 TATTTTAATCCGCTCCACTGTAATATCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCACTGT
318 TA-TTTCAT-CGCTCCACTGTAATCTCAGGCAAATAGGA-TACTGGCTTCAATTTGCTCCGCTGT
* * *
6832 AATCTTAGGGAGATAGGA-TACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAGATTC
380 AATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTC
* * *
6896 ACCGTCTTCGATCTGCTCCATTAT-TGCTCAGGAAGACAAGATCTGGAACTCTTCGGTCTATTCC
445 ACCATCTTCGATCTGCTCCACTATGT-CTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCC
* *
6960 ACAGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATAT
509 ACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATA-
* * *
7025 TCATTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCTCT
573 TCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCATTAATCTGCTCT
* * **
7090 GTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTT
638 GCTATAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
* * * *
7145 AGGGAGATAAGATCTGGATTTATTCAGTGTATTTCCGCT-TAATCGCATGGAGATAAGACCTGAT
1 AGGGAGATAAGATCTGGAATTATTCAGTCTA-TTCCGCTGGAATCGCAGGGAGATAAGACCTGAT
* * *
7209 GCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATA
65 GCAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATA
* * * * *
7274 TTAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCAGGGAGA-ATAGGTT-ACT
130 TAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGA-AGATTCAC-
*** * * * * * **
7337 GGGTTT-AATCTGCTCCGCTGTAAT-CTCACGGAGATAGGATTACTGG-CTTCAATCTGCTCCGC
193 AATTTTCAATCTGCTCCAC--TAATGCTTAGGGAGATAAGA-T-CTGGTCTTCAGTCTATTCCGC
* * * * * * * ** * * *
7399 TAATCTTATGGAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGC-TCAGGGAGACAAGAT
254 TAATCTCAGGGAGATAAGA--C-CTG-ATGCGATCTACTCTACTATAACATTAGAGAGATAAGAT
** * ** * * * * * * * * * * *
7463 CTGGAACTATTCGGTCTATTCCACTGTAATCTGAGGGAGATAAGA-CCT-GATGCGATCTACTCT
315 CT-TTA-T-TTC-ATC-GCTCCACTGTAATCTCAGGCAAATAGGATACTGGCTTCAATTTGCTCC
* * * * * *** * * * **
7526 ACTGTAA-CTTCAGAGAGGTAAGATCCT-TTATATTTAATAATTCGCTCCACCGTAATCTTAGGG
375 GCTGTAATC-TCAGGGAGATAGGAT--TACTGGCTTCAAT--TT-GCTCCGCTGTAATCTTTTGG
* * * * * * * * * * *
7589 AGATAGGATT-ACTAGCTTCAATCAGCTCCGCTGTGATCTCAGGGAGATAAGATCTGAAATTCTT
434 AGATAAGATTCACCATCTTCGATCTGCTCCACTATG-TCTCAGGAAGACAAGATCTGGAACTCTT
* * * *
7653 CGGTCTATTCCACTA-TAATCTC-GGGAGATAAGACCAGATGCGATCTACTCTACTGTAACTTAA
498 CGGCCTATTCCAC-AGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCA
* * * *
7716 GAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGC-T
562 GAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCAT
* * *
7780 TCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACC-GTTTCGATTAGCTCCACTATTGC
627 T-AATCTGCTCTGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGC
7844 TT
691 TT
* * * * * *
7846 AGGGAGATAAGATCTAGAATTCTTCGGTCTATTCCAG-TGGAATCTCAGGGAGTTTAGACCTGAT
1 AGGGAGATAAGATCTGGAATTATTCAGTCTATTCC-GCTGGAATCGCAGGGAGATAAGACCTGAT
* * *
7910 GCAATCTACTCTACTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATC
65 GCAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATA
7975 TAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAA
130 TAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAA
* * *
8040 TTTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCATTG-
195 TTTTCAATCTGCTCCACTAATGCTTAGGGAGATAAGATCTGG---TCTTCAGTCTATTCC---GC
*
8104 TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTTAGAGAGATAAGATCATT
254 TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATTAGAGAGATAAGATC-TT
8169 TATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCGCTGT
318 TA-TTTCAT-CGCTCCACTGTAATCTCAGGCAAATAGGA-TACTGGCTTCAATTTGCTCCGCTGT
*
8234 AATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCTGCTGTAATCTTTTGGAGATAAGATTC
380 AATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTC
8299 ACCATCTTCGATCTGCTCCACTAT-TGCTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCC
445 ACCATCTTCGATCTGCTCCACTATGT-CTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCC
8363 ACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATAT
509 ACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATAT
* *
8428 CCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGC-TTCAATCTGCTCT
574 CCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCATT-AATCTGCTCT
*
8492 GCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
638 GCTATAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
* * * * * *
8547 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTTAGACCTGATG
1 AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGATG
* * * *
8612 CAATCTACTCTACTGTAATTTCAGAGAGATAAGATCCATTATTTTAATCTGTTCCACTATAATCT
66 CAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATAT
8677 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAAT
131 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAAT
** * * *
8742 TTTCGTTTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTA
196 TTTCAATCTGCTCCACTAATGCTTAGGGAGATAAGATCTGG---TCTTCAGTCTATTCCGC--TA
*
8807 ATATCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATTAGAGAGATAAGATCCTTTA
256 ATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATTAGAGAGATAAGAT-CTTTA
* *
8872 GTTTCTTTCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTTGCTCCGCTGTAA
320 -TTTC-ATCGCTCCACTGTAATCTCAGGCAAATAGGA-TACTGGCTTCAATTTGCTCCGCTGTAA
8937 TCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTCAC
382 TCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTCAC
*
9002 CATCTTCGATCTGCTCCCCTATTGT-TCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCAC
447 CATCTTCGATCTGCTCCACTA-TGTCTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCAC
9066 AGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCC
511 AGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCC
* *
9131 TTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCTCTGTT
576 TTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCATTAATCTGCTCTGCT
* **
9196 ATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTT
641 ATAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
* * * *
9248 AGGGAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGATG
* * * *
9313 CGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATAT
66 CAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATAT
* * * * * * * **
9378 CAGGCAAATAGGATTACTGGCTTCAATTTGCTCCACTGTAATCTTAGGGAGATAGGATT-ACTGG
131 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCAC-AA
* * ** ** ** **
9442 CTTT-AATCTGCTCCGCTGTAAT-CTTTTGGAGATAAGATTCACCGTCTTC-GATCTGCTCCATT
195 TTTTCAATCTGCTCCAC--TAATGCTTAGGGAGATAAGA-TC-TGGTCTTCAG-TCTATTCCGCT
* * * * * * * * *
9504 ATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGTCTATTCCAC-AGTAATC-TCATG-GAGATA
255 AAT-CTCAGGGAGATAAGACCT-G-A---TGCGATCTACTCTACTA-TAA-CATTA-GAGAGATA
* * * * * * ** * *** * **
9566 AGA-CCTGA-TGCGATCTACTCTACTGTAA-CTTCAGAG-AGATAATATCATTTATTTTAATCCG
311 AGATCTTTATTTC-ATC-GCTCCACTGTAATC-TCAG-GCAAATAGGAT-ACTGGCTTCAATTTG
* ** * * * * * * * ***
9627 TTCAACTGTAATCTCAGAGTA-ATAGGATTACTAGCATT-AATCTGCTCTGTTATAATATCAGGG
371 CTCCGCTGTAATCTCAG-GGAGATAGGATTACTGGC-TTCAATTTGCTCCGCTGTAATCTTTTGG
* * * ** * * * ** *
9690 AGATCAGATTCACGATTTTTTAT-TAGCTCCACTAT-TGCTTAGGGAGATAAGATCTGGATTTAT
434 AGATAAGATTCACCATCTTCGATCT-GCTCCACTATGT-CTCAGGAAGACAAGATCTGGAACTCT
* ** * * * * * *
9753 TCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTA
497 TCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCA
* * * * * * * *
9818 GAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATATTAGGGAAATAGGATTACTTGC-T
562 GAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCAT
* * * * * * *** * *
9882 TCAATTTTCTCCGCTGTAATCTCAGGGAGAT-AGGTTTACTGGGTTT-AATCT-GCTCCGCTGTA
627 T-AATCTGCTCTGCTATAATCTCAGGGAGATAAGATTCAC-CATTTTCGAT-TAGCTCCAC--TA
* *
9944 AT-CTC
687 TTGCTT
* * * ** * ** *
9949 AGGGAGATAGGATTACTGG----CTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCAC
1 AGGGAGATAAGA-T-CTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGA--C-C
* * * * * * * ** * * ** *** **
10010 CGTCTTCGATCTGCTCCACTATTGC-TCAGGGAGACAAGAT-CTGGAACTATTCGGTCTATTCCA
61 TG-ATGCAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTA-T-TTTAATCTGCTCCA
* * * * * * * * * * ** *
10073 CTGTAATCTGAGGGAGATAAGA--CCT-GATGCGATCTACTCTACTGTAA-CTTCAGAGAG-GTA
122 CTATAATATAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC-TCAGGGAGAG-A
* *** * * *
10133 AGATCCTTTATTTT-AAT-TCGCTCCACCGTAAT-CTTAGGGAGATAGGATTACTAG-CTTCAAT
185 AGATTCACAATTTTCAATCT-GCTCCA-C-TAATGCTTAGGGAGATAAGA-T-CTGGTCTTCAGT
* * * * * * *
10194 C-AGCTCCGCTGTGATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATC-T
245 CTA-TTCCGC--TAATCTCAGGGAGATAAGACCTG--A---TGCGATCTACTCTACTATAA-CAT
* * * * * * * * * * * ***
10257 CAGGGAGATAAGA-CCTGA-TGCGATCTACTCTACTGTAA-CTTAAGAG-AGATAAGATCCTTTA
301 TAGAGAGATAAGATCTTTATTTC-ATC-GCTCCACTGTAATC-TCAG-GCAAATAGGATACTGGC
* * * * * *
10318 TTCTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAA
362 TTC-AATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAA
*** * * * * *
10383 TCTCAGGGAGATAAGATTCACCGTTTTCGAT-TAGCTCCACTAT-TGCTTAGGGAGATAAGATCT
426 TCTTTTGGAGATAAGATTCACCATCTTCGATCT-GCTCCACTATGT-CTCAGGAAGACAAGATCT
* * * ** * ** * *
10446 GGAATTTTTCGGTCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTG
489 GGAACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTG
* * * * *
10511 TAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATT
554 TAACTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATT
* * * * * * *
10576 ACTGGC-TTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTTGATTTGCTCC
619 ACTAGCATT-AATCTGCTCTGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCC
10640 ACTATTGCTT
683 ACTATTGCTT
* * ** * *
10650 AGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGATG
* * * * * * * *
10715 CGATCTACTCTACTATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCT
66 CAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATAT
* * *
10780 CAGGCAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTCAGGGAGA
131 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
10832 TAGGATTACT
Statistics
Matches: 7981, Mismatches: 1458, Indels: 1033
0.76 0.14 0.10
Matches are distributed among these distances:
685 5 0.00
686 43 0.01
687 44 0.01
688 229 0.03
689 192 0.02
690 348 0.04
691 88 0.01
692 62 0.01
693 86 0.01
694 127 0.02
695 306 0.04
696 340 0.04
697 431 0.05
698 599 0.08
699 790 0.10
700 929 0.12
701 2611 0.33
702 383 0.05
703 224 0.03
704 122 0.02
705 21 0.00
706 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (692 bp):
AGGGAGATAAGATCTGGAATTATTCAGTCTATTCCGCTGGAATCGCAGGGAGATAAGACCTGATG
CAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTATAATAT
AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAAT
TTTCAATCTGCTCCACTAATGCTTAGGGAGATAAGATCTGGTCTTCAGTCTATTCCGCTAATCTC
AGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATTAGAGAGATAAGATCTTTATTTCAT
CGCTCCACTGTAATCTCAGGCAAATAGGATACTGGCTTCAATTTGCTCCGCTGTAATCTCAGGGA
GATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTCACCATCTTCGA
TCTGCTCCACTATGTCTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCACAGTAATCTCA
GGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAA
TCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCATTAATCTGCTCTGCTATAATCTCAG
GGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
Found at i:8158 original size:219 final size:218
Alignment explanation
Indices: 7629--8246 Score: 950
Period size: 219 Copynumber: 2.8 Consensus size: 218
7619 CTGTGATCTC
* * *
7629 AGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTC-GGGAGATAAGACCAGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
*
7693 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* * *
7758 CAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCGT
131 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAGT
7823 TTCGATTAGCTCCACTATTGCTT
196 TTCGATTAGCTCCACTATTGCTT
* * * * *
7846 AGGGAGATAAGATCTAGAATTCTTCGGTCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* * * * *
7911 CAATCTACTCTACTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATCT
66 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* *
7976 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAAT
131 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCAC-AG
*
8041 TTTCGATTTGCTCCACTATTGCTT
195 TTTCGATTAGCTCCACTATTGCTT
* * *
8065 AGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* * * * *
8130 CGATCTACTCTACTATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* *
8195 CAGGCAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTCAGGGAGA
131 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
8247 TAGGATTACT
Statistics
Matches: 360, Mismatches: 39, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
217 41 0.11
218 133 0.37
219 186 0.52
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (218 bp):
AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAGT
TTCGATTAGCTCCACTATTGCTT
Found at i:8292 original size:44 final size:44
Alignment explanation
Indices: 8180--8282 Score: 170
Period size: 44 Copynumber: 2.3 Consensus size: 44
8170 ATTTTCATCC
* * *
8180 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
8224 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
*
8268 GCTCTGCTGTAATCT
1 GCTCCGCTGTAATCT
8283 TTTGGAGATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
Found at i:8296 original size:219 final size:219
Alignment explanation
Indices: 7577--8271 Score: 923
Period size: 219 Copynumber: 3.2 Consensus size: 219
7567 TCGCTCCACC
* * * * * *
7577 GTAATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGCTCCGCT-GTGATCTCAGGGAGATAAG
1 GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATG--CTTAGGGAGATAAG
* * *
7640 ATCTGAAATTCTTCGGTCTATTCCACTATAATCTC-GGGAGATAAGACCAGATGCGATCTACTCT
64 ATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
*
7704 ACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCTCAGGGAAATAG
129 ACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAG
*
7769 GATTGCTGGCTTCAATCTGCTCCGCT
194 GATTACTGGCTTCAATCTGCTCCGCT
* * * *
7795 GTAATCTCAGGGAGATAAGATTCAC-CGTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGAT
1 GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATGCTTAGGGAGATAAGAT
* * * * * *
7859 CTAGAATTCTTCGGTCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTAC
66 CTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
* * * * *
7924 TGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGA
131 TGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGA
7989 TTACTGGCTTCAATCTGCTCCGCT
196 TTACTGGCTTCAATCTGCTCCGCT
* * ** * * *
8013 GTAATCTCAGGGAGAGAAGATTCACAATTTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGAT
1 GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATGCTTAGGGAGATAAGAT
* * *
8078 CTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
66 CTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
* * * * * *
8143 TATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGA
131 TGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGA
*
8208 TTACTGGCTTCAATTTGCTCCGCT
196 TTACTGGCTTCAATCTGCTCCGCT
* * *
8232 GTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATTTGCTC
1 GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTC
8272 TGCTGTAATC
Statistics
Matches: 418, Mismatches: 55, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
217 43 0.10
218 180 0.43
219 195 0.47
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (219 bp):
GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATGCTTAGGGAGATAAGAT
CTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
TGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGA
TTACTGGCTTCAATCTGCTCCGCT
Found at i:8389 original size:263 final size:263
Alignment explanation
Indices: 7956--8516 Score: 807
Period size: 263 Copynumber: 2.1 Consensus size: 263
7946 CCTTTATTTT
* * * * *
7956 AATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
* * * * * **
8021 AGGGAGAGAAGATTCACAATTTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTT
66 AGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACT
* ** *
8086 CTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTT
131 CTTCAGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAACTT
* *
8151 TAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGC
196 CAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGC
8216 TTC
261 TTC
* * * *
8219 AATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCTGCTGTAATCTT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
** * *
8284 TTGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACT
66 AGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACT
* *
8349 CTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTT
131 CTTCAGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAACTT
* * * * *
8414 CAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGC
196 CAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGC
8479 TTC
261 TTC
* *
8482 AATCTGCTCTGCTGTAATCTCAGGGAGATAAGATT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATT
8517 CACCATTTTC
Statistics
Matches: 262, Mismatches: 36, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
263 262 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (263 bp):
AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
AGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACT
CTTCAGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAACTT
CAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGC
TTC
Found at i:8774 original size:482 final size:477
Alignment explanation
Indices: 7803--9742 Score: 1734
Period size: 482 Copynumber: 4.0 Consensus size: 477
7793 CTGTAATCTC
* *
7803 AGGGAGATAAGATTCACCGT-TTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTAGAAT
1 AGGGAGATAAGATTCACCATCTTCGATCT-GCTCCACTATTGCTCAGGGAGATAAGATCT-GAA-
** * * *
7866 TCTTCGGTCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAAT
63 TCTTCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGT-AAT
* * *
7931 TCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGG
127 TCAGAGAGATAATATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATTACTGG
* *
7996 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTCGATTTGCTCCACTATT
192 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGA-TTGCTCCACTATT
* * *
8061 GCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCT
256 GCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCT
* * *
8126 GATGCGATCTACTCTACTATAACTTT-AGAGAGATAAGAT-CATTTATTTTCATCCGCTCCACTG
321 GATGCGATCTACTCTACTGTAA-TTTCAGAGAGATAAGATCCA-TTATTTTAATCCGTTCCACTG
* * *
8189 TAATCTCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATT
384 TAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
**** * ** *
8254 -ACTGGCTTCAATTTGCTCTGCTGTAAT-CTT
449 CACAATTTTC-TTTTGCTC--CACTATTGCTT
** * *
8284 TTGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACT
1 AGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAAGATCT-GAA-T
* * *
8349 CTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTT
64 CTTCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAA-TT
* *
8414 CAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGC
128 CAGAGAGATAATATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGC
*
8479 TTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTG
193 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATT-GCTCCACTATTG
* * *
8544 CTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTTAGACCTG
257 CTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTG
* * *
8609 ATGCAATCTACTCTACTGTAATTTCAGAGAGATAAGATCCATTATTTTAATCTGTTCCACTATAA
322 ATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCATTATTTTAATCCGTTCCACTGTAA
* *
8674 TCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCAC
387 TCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCAC
8739 AATTTTCGTTTTGCTCCACTATTGCTT
452 AATTTTC-TTTTGCTCCACTATTGCTT
* ** ** * * *
8766 AGGGAGATAAGATCTGGA-TTTCTTC-AGTCTATTCCACTGTAAT-ATCAGGGAGATAAGACCTG
1 AGGGAGATAAGAT-T-CACCATCTTCGA-TCTGCTCCAC--TATTGCTCAGGGAGATAAGATCTG
* * * * * * * * ** * *
8828 -A--TGCGATCTACTCTACTA-TAA-CATTAGAGAGATAAGATCCTTTAGTTTCTTTC-GCTCCA
61 AATCTTCGGTCTATTCCAC-AGTAATC-TCAGGGAGATAAGA-CC--T-GATGCAATCTACTCTA
* * *** * * * * *
8887 CTGTAATCTCAG-GCAAATAGGAT-TAC-TGGCTTAAATTTGCTCCGCTGTAATCTCAGGGAGAT
120 CTGTAAT-TCAGAG-AGATA--ATATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGAAAT
* *** *
8949 AGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTCACCATCTTCGATCT
181 AGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGAT-T
* * * * * *
9014 GCTCCCCTATTG-TTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCACAGTAATCTCAGG
245 GCTCCACTATTGCTT-AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGG
* * * *
9078 GAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATC
309 GAGATAAGACCTGATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCATTATTTTAATC
* * * * *
9143 CGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGG
374 CGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTGTAATCTCAGG
* *
9207 GAGATCAGATTCACCATTTT-TTATTAGCTCCACTATTGCTT
438 GAGATAAGATTCACAATTTTCTT-TT-GCTCCACTATTGCTT
* ** * * ** * * * * *
9248 AGGGAGATAAGATCTGGA-TTTATTC-AGTGTATTCCGCTGTAAT-CGCATGGAGATAAGACCTG
1 AGGGAGATAAGAT-T-CACCATCTTCGA-TCTGCTCCAC--TATTGCTCAGGGAGATAAGATCTG
* * * * * * * * ** ** *
9310 -A--TGCGATCTACTCTACTGTAA-CTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACT
61 AATCTTCGGTCTATTCCACAGTAATC-TCAGGGAGATAAGA-CC-TGA-TGCAATCTACTCTACT
* * *** * * * * *
9371 GTAATATCAG-GCAAATAGGAT-TAC-TGGCTTCAATTTGCTCCACTGTAATCTTAGGGAGATAG
122 GTAAT-TCAGAG-AGATA--ATATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGAAATAG
* *** * *
9433 GATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAGATTCACCGTCTTCGATCTGC
183 GATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TGC
* * * * * * *
9498 TCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGTCTATTCCACAGTAATCTCATGGAG
247 TCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAG
* *
9563 ATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATAT-CATTTATTTTAATCCG
312 ATAAGACCTGATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCA-TTATTTTAATCCG
* * * * * * * *
9627 TTCAACTGTAATCTCAGAGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATATCAGGGA
376 TTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTGTAATCTCAGGGA
* *
9691 GATCAGATTCACGATTTT-TTATTAGCTCCACTATTGCTT
440 GATAAGATTCACAATTTTCTT-TT-GCTCCACTATTGCTT
9730 AGGGAGATAAGAT
1 AGGGAGATAAGAT
9743 CTGGATTTAT
Statistics
Matches: 1276, Mismatches: 150, Indels: 65
0.86 0.10 0.04
Matches are distributed among these distances:
478 1 0.00
479 24 0.02
480 5 0.00
481 41 0.03
482 1144 0.90
483 41 0.03
484 17 0.01
485 3 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (477 bp):
AGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAAGATCTGAATCT
TCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAATTCAG
AGAGATAATATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTC
AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTGCTCCACTATTGCTTA
GGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
GATCTACTCTACTGTAATTTCAGAGAGATAAGATCCATTATTTTAATCCGTTCCACTGTAATCTC
AGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACAATT
TTCTTTTGCTCCACTATTGCTT
Found at i:8981 original size:263 final size:263
Alignment explanation
Indices: 8655--9211 Score: 733
Period size: 263 Copynumber: 2.1 Consensus size: 263
8645 ATCCATTATT
* * * *
8655 TTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC
1 TTAATCTGCTCCGCTATAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC
* * * * *
8720 TCAGGGAGAGAAGATTCACAATTTTCGTTTTGCTCCACTATTGCTT-AGGGAGATAAGATCTGGA
66 TCAGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTG-TTCAGGAAGACAAGATCTGGA
** * * *
8784 TTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAA
130 ACTCTTCAGCCTATTCCACAGTAATATCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAA
** *
8849 CATT-AGAGAGATAAGATCCTTTAGTTTCTTTCGCTCCACTGTAATCTCAGGCAAATAGGATTAC
195 C-TTCAGAGAGATAAGATCCTTTAGTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTAC
*
8913 TGGC-
259 TAGCA
* * *
8917 TTAAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAAT
1 TT-AATCTGCTCCGCTATAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
*** * * *
8982 CTTTTGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTATTGTTCAGGAAGACAAGATCTGGA
65 CTCAGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTGTTCAGGAAGACAAGATCTGGA
* * *
9047 ACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAA
130 ACTCTTCAGCCTATTCCACAGTAATATCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAA
* * * **
9112 CTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACT
195 CTTCAGAGAGATAAGATCCTTTAGTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACT
9177 AGCA
260 AGCA
* *
9181 TTAATCTGCTCTGTTATAATCTCAGGGAGAT
1 TTAATCTGCTCCGCTATAATCTCAGGGAGAT
9212 CAGATTCACC
Statistics
Matches: 252, Mismatches: 39, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
262 6 0.02
263 244 0.97
264 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (263 bp):
TTAATCTGCTCCGCTATAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC
TCAGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTGTTCAGGAAGACAAGATCTGGAA
CTCTTCAGCCTATTCCACAGTAATATCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAAC
TTCAGAGAGATAAGATCCTTTAGTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTA
GCA
Found at i:8993 original size:44 final size:44
Alignment explanation
Indices: 8881--8983 Score: 170
Period size: 44 Copynumber: 2.3 Consensus size: 44
8871 AGTTTCTTTC
* * *
8881 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTAAATTT
*
8925 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTAAATTT
8969 GCTCCGCTGTAATCT
1 GCTCCGCTGTAATCT
8984 TTTGGAGATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTAAATTT
Found at i:8997 original size:219 final size:217
Alignment explanation
Indices: 8224--8954 Score: 996
Period size: 219 Copynumber: 3.3 Consensus size: 217
8214 GCTTCAATTT
* * * * ***
8224 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCTGCTGTAATCTTTTGGA
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
* * * * *
8289 GATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCG
66 GATAAGATTCACCATCTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCG
* * *
8354 GCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
131 GTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
* *
8419 AGATAATATCCTTTATTTTAATCC
196 AGATAAGATCCTTTATTTT--TTC
* * *
8443 GTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
* *
8508 GATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCG
66 GATAAGATTCACCATCTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCG
* * * * *
8573 GTCTATTCCACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAATTTCAGAG
131 GTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
* *
8638 AGATAAGATCCATTATTTTAATC
196 AGATAAGATCCTTTATTTT-TTC
* * *
8661 TGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGG
1 -GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGG
* * * * *
8726 AGAGAAGATTCACAATTTTCGTTTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTC
65 AGATAAGATTCACCATCTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTC
* * *
8791 AGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATT-AG
130 GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAAC-TTCAG
8855 AGAGATAAGATCCTTTAGTTTCTTTC
194 AGAGATAAGATCCTTTA-TTT-TTTC
* * *
8881 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
*
8946 GATAGGATT
66 GATAAGATT
8955 ACTGGCTTCA
Statistics
Matches: 454, Mismatches: 54, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
218 2 0.00
219 444 0.98
220 7 0.02
221 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (217 bp):
GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
GATAAGATTCACCATCTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCG
GTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
AGATAAGATCCTTTATTTTTTC
Found at i:9464 original size:44 final size:44
Alignment explanation
Indices: 9355--9480 Score: 153
Period size: 44 Copynumber: 2.9 Consensus size: 44
9345 GATCCTTTAT
* * * * *
9355 TTTAATCCGCTCCACTGTAATATCAGGCAAATAGGATTACTGGC
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
* *
9399 TTCAATTTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
* ** *
9443 TTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAGATT
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATT
9481 CACCGTCTTC
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 69 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
Found at i:9479 original size:219 final size:216
Alignment explanation
Indices: 8925--9455 Score: 609
Period size: 219 Copynumber: 2.4 Consensus size: 216
8915 GCTTAAATTT
* * **
8925 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGA
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGA
** * * * * *
8990 GATAAGATTCACCATCTTCGATCTGCTCCCCTATTGTTCAGGAAGACAAGATCTGGAACTCTTCG
66 GAT-AGATTCACCATCTTTAATCTGCT-CCCTATTCTTAAGG-AGATAAGATCTGGAACTATTCA
*
9055 GCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
128 GCCTATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
*
9120 AGATAATATCCTTTATTTTAATCC
193 AGATAAGATCCTTTATTTTAATCC
* * * * * * * *
9144 GTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGG
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATTTGCTCCGCTGTAATCTTAGGG
* * * **
9208 AGATCAGATTCACCATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATT
65 AGAT-AGATTCACCATCTTTAATCT-GCTCC-CTATT-CTTAAGGAGATAAGATCTGGAACTATT
** * * * * *
9272 CAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAG
126 CAGCCTATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAG
9337 AGAGATAAGATCCTTTATTTTAATCC
191 AGAGATAAGATCCTTTATTTTAATCC
* * *
9363 GCTCCACTGTAATATCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCACTGTAATCTTAGGGA
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGA
***
9428 GATAGGATT-ACTGGCTTTAATCTGCTCC
66 GATA-GATTCACCATCTTTAATCTGCTCC
9456 GCTGTAATCT
Statistics
Matches: 256, Mismatches: 49, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
218 18 0.07
219 232 0.91
220 6 0.02
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (216 bp):
GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGA
GATAGATTCACCATCTTTAATCTGCTCCCTATTCTTAAGGAGATAAGATCTGGAACTATTCAGCC
TATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGA
TAAGATCCTTTATTTTAATCC
Found at i:9743 original size:482 final size:482
Alignment explanation
Indices: 8445--9947 Score: 2305
Period size: 482 Copynumber: 3.1 Consensus size: 482
8435 TTTAATCCGT
* * * ***
8445 TCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTTTGGAGA
* * * * *
8510 TAAGATTCACCATTTTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGG
66 TAAGATTCACCATCTTCGATCT-GCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGG
* * * * * *
8574 TCTATTCCACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAATTTCAGAGA
130 TCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
* * * * * *
8639 GATAAGATCCA-TTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGC-TTCA
195 GATAATAT-CATTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-A
* * * **
8702 ATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTCGTT-TT-GCTCCACTATTGCT
258 ATCTGCTCTGTTATAATCTCAGGGAGATCAGATTCACAATTTT--TTATTAGCTCCACTATTGCT
* * * ** *
8765 TAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGAT
321 TAGGGAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGAT
* * * * * *
8830 GCGATCTACTCTACTATAACATTAGAGAGATAAGATCCTTTAGTTTCTTTCGCTCCACTGTAATC
386 GCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATA
*
8895 TCAGGCAAATAGGATTACTGGCTTAAATTTGC
451 TCAGGCAAATAGGATTACTGGCTTCAATTTGC
* *
8927 TCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTTTGGAGA
* * *
8992 TAAGATTCACCATCTTCGATCTGCTCCCCTATTGTTCAGGAAGACAAGATCTGGAACTCTTCGGC
66 TAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGT
*
9057 CTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
131 CTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
*
9122 ATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATC
196 ATAATATCATTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATC
*
9187 TGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGG
261 TGCTCTGTTATAATCTCAGGGAGATCAGATTCACAATTTTTTATTAGCTCCACTATTGCTTAGGG
9252 AGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGAT
326 AGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGAT
*
9317 CTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGG
391 CTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATATCAGG
9382 CAAATAGGATTACTGGCTTCAATTTGC
456 CAAATAGGATTACTGGCTTCAATTTGC
* *
9409 TCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTTTGGAGA
* *
9474 TAAGATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGT
66 TAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGT
*
9539 CTATTCCACAGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
131 CTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
* *
9604 ATAATATCATTTATTTTAATCCGTTCAACTGTAATCTCAGAGTAATAGGATTACTAGCATTAATC
196 ATAATATCATTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATC
* *
9669 TGCTCTGTTATAATATCAGGGAGATCAGATTCACGATTTTTTATTAGCTCCACTATTGCTTAGGG
261 TGCTCTGTTATAATCTCAGGGAGATCAGATTCACAATTTTTTATTAGCTCCACTATTGCTTAGGG
9734 AGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGAT
326 AGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGAT
* * *
9799 CTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATATTAGG
391 CTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATATCAGG
* * *
9864 GAAATAGGATTACTTGCTTCAATTTTC
456 CAAATAGGATTACTGGCTTCAATTTGC
* * * *
9891 TCCGCTGTAATCTCAGGGAGATAGGTTTACTGGGTTTAATCTGCTCCGCTGTAATCT
1 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCT
9948 CAGGGAGATA
Statistics
Matches: 939, Mismatches: 77, Indels: 10
0.92 0.08 0.01
Matches are distributed among these distances:
480 2 0.00
481 3 0.00
482 931 0.99
483 3 0.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (482 bp):
TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTTTGGAGA
TAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGT
CTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
ATAATATCATTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATC
TGCTCTGTTATAATCTCAGGGAGATCAGATTCACAATTTTTTATTAGCTCCACTATTGCTTAGGG
AGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGAT
CTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATATCAGG
CAAATAGGATTACTGGCTTCAATTTGC
Found at i:9872 original size:219 final size:219
Alignment explanation
Indices: 9406--9913 Score: 581
Period size: 219 Copynumber: 2.3 Consensus size: 219
9396 GGCTTCAATT
* * * * * ***
9406 TGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGG
1 TGCTCCACTGTAATCTTAGGGAAATAGGATTACTAGCATTAATCTGCTCCGCTATAATATCAGGG
* *
9471 AGATAAGATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTC
66 AGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTC
* *
9536 GGTCTATTCCACAGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
131 AGTCTATTCCACAGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
*
9601 GAGATAATATCATTTATTTTAATC
196 GAGATAAGATCATTTATTTTAATC
* * * * * * * *
9625 CGTTCAACTGTAATCTCAGAGTAATAGGATTACTAGCATTAATCTGCTCTGTTATAATATCAGGG
1 TGCTCCACTGTAATCTTAGGGAAATAGGATTACTAGCATTAATCTGCTCCGCTATAATATCAGGG
* * ** * * * **
9690 AGATCAGATTCA-CGATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTAT
66 AGATAAGATTCACCG-TCTTCGATCT-GCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTAT
* * * *
9753 TCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTA
129 TCAGTCTATTCCACAGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCA
* *
9818 GAGAGATAAGATCCTTTATTTTCATC
194 GAGAGATAAGATCATTTATTTTAATC
* * * * * * *
9844 TGCTCCACTATAATATTAGGGAAATAGGATTACTTGC-TTCAATTTTCTCCGCTGTAATCTCAGG
1 TGCTCCACTGTAATCTTAGGGAAATAGGATTACTAGCATT-AATCTGCTCCGCTATAATATCAGG
9908 GAGATA
65 GAGATA
9914 GGTTTACTGG
Statistics
Matches: 234, Mismatches: 52, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
218 5 0.02
219 229 0.98
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (219 bp):
TGCTCCACTGTAATCTTAGGGAAATAGGATTACTAGCATTAATCTGCTCCGCTATAATATCAGGG
AGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTC
AGTCTATTCCACAGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
GAGATAAGATCATTTATTTTAATC
Found at i:9938 original size:44 final size:44
Alignment explanation
Indices: 9841--10026 Score: 210
Period size: 44 Copynumber: 4.2 Consensus size: 44
9831 CTTTATTTTC
* * * * * *
9841 ATCTGCTCCACTATAATATTAGGGAAATAGGATTACTTGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
* * * * *
9885 ATTTTCTCCGCTGTAATCTCAGGGAGATAGGTTTACTGGGTTTA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
9929 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
* * * * * *
9973 ATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGTCTTCG
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCA
10018 ATCTGCTCC
1 ATCTGCTCC
10027 ACTATTGCTC
Statistics
Matches: 119, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 103 0.87
45 16 0.13
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.34
Consensus pattern (44 bp):
ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
Found at i:9961 original size:88 final size:88
Alignment explanation
Indices: 9841--10001 Score: 232
Period size: 88 Copynumber: 1.8 Consensus size: 88
9831 CTTTATTTTC
* * * *
9841 ATCTGCTCCACTATAATATTAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCA
1 ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCA
9906 GGGAGATAGGTTTACTGGGTTTA
66 GGGAGATAGGTTTACTGGGTTTA
* * * * *
9929 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTA
1 ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCA
*
9994 TGGAGATA
66 GGGAGATA
10002 AGATTCACCG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 63 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (88 bp):
ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCA
GGGAGATAGGTTTACTGGGTTTA
Found at i:10119 original size:482 final size:479
Alignment explanation
Indices: 8449--10400 Score: 2188
Period size: 482 Copynumber: 4.1 Consensus size: 479
8439 ATCCGTTCCA
* * * * ***
8449 CTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* * * * *
8514 ATTCACCATTTTCGAT-TAGCTCCAC-TATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCT
66 ATTCACCGTCTTCGATCT-GCTCC-CTTATT-CTTAGGAAGACAAGATCTGGAACTCTTCGGTCT
* * * *
8577 ATTCCAC-TGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAATTTCAGAGAGA
128 ATTCCACAT--AATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGA
* * * * * * * *
8641 TAAGATCCATTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGC-TTCAATC
191 TAATATCC-TTATTTTAATCCGTTCAACTGTAATCTCAGAGTAATAGGATTACTAGCATT-AATC
* **
8705 TGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTCGTT-TT-GCTCCACTATTGCTTAG
254 TGCTCCGCTATAATCTCAGGGAGATCAGATTCACAATTTT--TTATTAGCTCCACTATTGCTTAG
* **
8768 GGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCG
317 GGAGATAAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCG
* * * *
8833 ATCTACTCTACTATAACATTAGAGAGATAAGATCCTTTAGTTTCT-TTC-GCTCCACTGTAATCT
382 ATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTA-TTT-TAATCTGCTCCACTGTAATAT
*
8896 CAGGCAAATAGGATTACTGGCTTAAATTTGCTCCG
445 CAGGCAAATAGGATTACTGGCTTCAATTTGCTCCG
* *
8931 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* * * *
8996 ATTCACCATCTTCGATCTGCTCCCCTATTGTTCAGGAAGACAAGATCTGGAACTCTTCGGCCTAT
66 ATTCACCGTCTTCGATCTGCTCCCTTATTCTT-AGGAAGACAAGATCTGGAACTCTTCGGTCTAT
*
9061 TCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
130 TCCACA-TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
* *
9126 TATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCT
194 TATCC-TTATTTTAATCCGTTCAACTGTAATCTCAGAGTAATAGGATTACTAGCATTAATCTGCT
* * *
9191 CTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
258 CCGCTATAATCTCAGGGAGATCAGATTCACAATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
* * *
9256 AAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTAC
323 AAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCGATCTAC
*
9321 TCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAA
388 TCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATATCAGGCAAA
*
9386 TAGGATTACTGGCTTCAATTTGCTCCA
453 TAGGATTACTGGCTTCAATTTGCTCCG
*
9413 CTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* *
9478 ATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGTCTAT
66 ATTCACCGTCTTCGATCTGCTCCCTTATT-CTTAGGAAGACAAGATCTGGAACTCTTCGGTCTAT
*
9543 TCCACAGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
130 TCCACA-TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
*
9608 TATCATTTATTTTAATCCGTTCAACTGTAATCTCAGAGTAATAGGATTACTAGCATTAATCTGCT
194 TATC-CTTATTTTAATCCGTTCAACTGTAATCTCAGAGTAATAGGATTACTAGCATTAATCTGCT
* * * *
9673 CTGTTATAATATCAGGGAGATCAGATTCACGATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
258 CCGCTATAATCTCAGGGAGATCAGATTCACAATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
* * *
9738 AAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTAC
323 AAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCGATCTAC
* * * *
9803 TCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATATTAGGGAAA
388 TCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATATCAGGCAAA
* *
9868 TAGGATTACTTGCTTCAATTTTCTCCG
453 TAGGATTACTGGCTTCAATTTGCTCCG
* * *** *
9895 CTGTAATCTCAGGGAGATAGGTTTACTGGGTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAGG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* * * * * * * *
9960 ATT-ACTGGCTTCAATCTGCTCCGCTGTAATCTTATGG-AGATAAGAT-T-CACCGTCTTCGATC
66 ATTCACCGTCTTCGATCTGCTCC-CT-TATTCTTA-GGAAGACAAGATCTGGAAC-TCTTCGGTC
** * * * * * * * *
10021 TGCTCCAC-TATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAA-TCTGA
127 TATTCCACATAAT-CTCAGGGAGATAAGACCT-G----ATGCGATCTACTCTACTGTAACT-TCA
* * * *** *** * * * *
10084 GGGAGATAAGA-CCTGA-TGCGATCTACTCTACTGTAA-CTTCAGAG-AGGTAAGATCCT-TTA-
185 GAGAGATAATATCCTTATTTTAATCCGTTCAACTGTAATC-TCAGAGTA-ATAGGAT--TACTAG
** * ** * * ** ** * *
10143 TTTTAAT-TCGCTCCACCGTAATCTTAGGGAGAT-AGGATT-ACTAGCTTCAATCAGCTCCGCT-
246 CATTAATCT-GCTCCGCTATAATCTCAGGGAGATCA-GATTCACAATTTTTTATTAGCTCCACTA
* * * * * * * *
10204 GTGATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAG
309 TTG--CTTAGGGAGATAAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAG
* * *
10269 ACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCTGTTCCAC
372 ACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCAC
* * * *
10334 TGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCG
437 TGTAATATCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCG
*
10377 CTGTAATCTCAGGGAGATAAGATT
1 CTGTAATCTCAGGGAGATAGGATT
10401 CACCGTTTTC
Statistics
Matches: 1290, Mismatches: 149, Indels: 62
0.86 0.10 0.04
Matches are distributed among these distances:
479 3 0.00
480 22 0.02
481 61 0.05
482 1159 0.90
483 13 0.01
484 4 0.00
485 28 0.02
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (479 bp):
CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
ATTCACCGTCTTCGATCTGCTCCCTTATTCTTAGGAAGACAAGATCTGGAACTCTTCGGTCTATT
CCACATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATA
TCCTTATTTTAATCCGTTCAACTGTAATCTCAGAGTAATAGGATTACTAGCATTAATCTGCTCCG
CTATAATCTCAGGGAGATCAGATTCACAATTTTTTATTAGCTCCACTATTGCTTAGGGAGATAAG
ATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCGATCTACTCT
ACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATATCAGGCAAATAG
GATTACTGGCTTCAATTTGCTCCG
Found at i:10226 original size:175 final size:175
Alignment explanation
Indices: 10034--10399 Score: 563
Period size: 175 Copynumber: 2.1 Consensus size: 175
10024 TCCACTATTG
* * * *
10034 CTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAATCTGAGGGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
* * *
10099 ATGCGATCTACTCTACTGTAACTTCAGAGAGGTAAGATCCTTTATTTTAAT-TCGCTCCACCGTA
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCT-GCTCCACCGTA
* * *
10163 ATCTTAGGGAGATAGGATTACTAGCTTCAATCAGCTCCGCTGTGAT
130 ATCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
* *
10209 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
* *
10274 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCTGTTCCACTGTAA
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCTGCTCCACCGTAA
* * *
10339 TCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAAT
131 TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
10384 CTCAGGGAGATAAGAT
1 CTCAGGGAGATAAGAT
10400 TCACCGTTTT
Statistics
Matches: 173, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
175 172 0.99
176 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30
Consensus pattern (175 bp):
CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCTGCTCCACCGTAA
TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
Found at i:10338 original size:219 final size:218
Alignment explanation
Indices: 10212--10838 Score: 957
Period size: 219 Copynumber: 2.9 Consensus size: 218
10202 CTGTGATCTC
* *
10212 AGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
*
10277 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCTGTTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCT
* *
10342 CAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCGT
131 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACAG-
10407 TTTCGATTAGCTCCACTATTGCTT
195 TTTCGATTAGCTCCACTATTGCTT
* * * * *
10431 AGGGAGATAAGATCTGGAATTTTTCGGTCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* * * *
10496 CAATCTACTCTACTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATCT
66 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCT
* * *
10561 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAAT
131 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCAC-AG
* *
10626 TTTTGATTTGCTCCACTATTGCTT
195 TTTCGATTAGCTCCACTATTGCTT
* * *
10650 AGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* * * * * *
10715 CGATCTACTCTACTATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCT
* * *
10780 CAGGCAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATT
131 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
10839 ACTGGCTTCA
Statistics
Matches: 367, Mismatches: 40, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
219 367 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (218 bp):
AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCT
CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACAGT
TTCGATTAGCTCCACTATTGCTT
Found at i:10344 original size:85 final size:85
Alignment explanation
Indices: 10068--10347 Score: 253
Period size: 85 Copynumber: 3.2 Consensus size: 85
10058 ATTCGGTCTA
* *
10068 TTCCACTGTAATCTGAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
*
10133 AGATCCTTTATTTTAAT-TCG
66 AGATCCTTTATTCTAATCT-G
* * * * * * * * ** * *
10153 CTCCACCGTAATCTTAGGGAGATAGGATTACTAGCTTCAATC-AGCTCCGCTGTGA-TCTCAGGG
1 TTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGCGATCTA-CTCTACTGTAACT-TCAGAG
** ** *
10216 AGATAAGAT-CTGAAATTCTTCGGTCTA
61 AGATAAGATCCT-TTATTC-T-AATCTG
* *
10243 TTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
10308 AGATCCTTTATTCTAATCTG
66 AGATCCTTTATTCTAATCTG
10328 TTCCACTGTAATCTCAGGGA
1 TTCCACTGTAATCTCAGGGA
10348 AATAGGATTG
Statistics
Matches: 144, Mismatches: 39, Indels: 24
0.70 0.19 0.12
Matches are distributed among these distances:
85 45 0.31
86 1 0.01
87 37 0.26
88 36 0.25
89 1 0.01
90 23 0.16
91 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (85 bp):
TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCCTTTATTCTAATCTG
Found at i:10776 original size:482 final size:482
Alignment explanation
Indices: 10329--11865 Score: 2380
Period size: 482 Copynumber: 3.2 Consensus size: 482
10319 TCTAATCTGT
* *
10329 TCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * * * *
10394 TAAGATTCACCGTTTTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTTTTCGG
66 TAAGATTCACCGTCTTCGATCT-GCTCCACTATTGCTTAGGAAGACAAGATCTGGAACTCTTCGG
** * * * * *
10458 TCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGA
130 TCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
* * * * * *
10523 GATAAGATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGC-TTCAA
195 GATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AA
* * * ** * * *
10587 TCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTTGATTTGCTCCACTATTGCTTAG
259 TCTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAG
* * ** * *
10652 GGAGATAAGATCTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCG
324 GGAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCG
* * *
10717 ATCTACTCTACTATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCA
389 ATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATATCA
10782 GGCAAATAGGATTACTGGCTTCAATTTGC
454 GGCAAATAGGATTACTGGCTTCAATTTGC
* * ***
10811 TCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* *
10876 TAAGATTCACCATCTTCGATCTGCTCCCCTATTG-TTCAGGAAGACAAGATCTGGAACTCTTCGG
66 TAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTT-AGGAAGACAAGATCTGGAACTCTTCGG
* *
10940 CCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
130 TCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
11005 GATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAAT
195 GATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAAT
11070 CTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGG
260 CTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGG
11135 GAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGA
325 GAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGA
*
11200 TCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAG
390 TCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATATCAG
11265 GCAAATAGGATTACTGGCTTCAATTTGC
455 GCAAATAGGATTACTGGCTTCAATTTGC
* * ***
11293 TCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* *
11358 TAAGATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGT
66 TAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTTAGGAAGACAAGATCTGGAACTCTTCGGT
*
11423 CTATTCCACAGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
131 CTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
* *
11488 ATAATATCATTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATC
196 ATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATC
11553 TGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGG
261 TGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGG
11618 AGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGAT
326 AGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGAT
* * *
11683 CTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATATTAGG
391 CTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATATCAGG
* * *
11748 GAAATAGGATTACTTGCTTCAATTTTC
456 CAAATAGGATTACTGGCTTCAATTTGC
* * * *
11775 TCCGCTGTAATCTCAGGGAGATAGGTTTACTGGGTTTAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * * *
11840 TAGGATT-ACTGGCTTCAATCTGCTCC
66 TAAGATTCACCGTCTTCGATCTGCTCC
11866 GCTGTAATCT
Statistics
Matches: 973, Mismatches: 78, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
481 18 0.02
482 951 0.98
483 4 0.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (482 bp):
TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTTAGGAAGACAAGATCTGGAACTCTTCGGT
CTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
ATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATC
TGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGG
AGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGAT
CTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATATCAGG
CAAATAGGATTACTGGCTTCAATTTGC
Found at i:10866 original size:263 final size:263
Alignment explanation
Indices: 10539--11095 Score: 758
Period size: 263 Copynumber: 2.1 Consensus size: 263
10529 ATCCTTTATT
* * * *
10539 TTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC
1 TTAATCTGCTCCGCTATAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC
* * * * *
10604 TCAGGGAGAGAAGATTCACAATTTTTGATTTGCTCCACTATTGCTT-AGGGAGATAAGATCTGGA
66 TCAGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTG-TTCAGGAAGACAAGATCTGGA
** * ** *
10668 TTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAA
130 ACTCTTCAGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAA
* *
10733 CTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACT
195 CTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACT
*
10798 GGC-
260 AGCA
* * *
10801 TTCAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAAT
1 TT-AATCTGCTCCGCTATAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
*** * * *
10866 CTTTTGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTATTGTTCAGGAAGACAAGATCTGGA
65 CTCAGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTGTTCAGGAAGACAAGATCTGGA
* *
10931 ACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAA
130 ACTCTTCAGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAA
* * * **
10996 CTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACT
195 CTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACT
11061 AGCA
260 AGCA
* *
11065 TTAATCTGCTCTGTTATAATCTCAGGGAGAT
1 TTAATCTGCTCCGCTATAATCTCAGGGAGAT
11096 CAGATTCACC
Statistics
Matches: 254, Mismatches: 38, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
262 4 0.02
263 248 0.98
264 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (263 bp):
TTAATCTGCTCCGCTATAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC
TCAGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTGTTCAGGAAGACAAGATCTGGAA
CTCTTCAGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAAC
TTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTA
GCA
Found at i:10867 original size:701 final size:697
Alignment explanation
Indices: 6349--13905 Score: 4724
Period size: 701 Copynumber: 10.8 Consensus size: 697
6339 ATTTGCTCCG
* * ***
6349 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGA-AAG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
* ** * * * ** * *
6413 ATTCACCATCTTCGATCTGCTCC-CTATTG-TTCAGGAAGACAAGATCTGGAACTCTTCGGCCTA
66 ATTCACCATTTTTAATTTGCTCCACTATTGCTT-AGGGAGATAAGATCTGGATTTCTTCAGTCTA
* * *
6476 TTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
130 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATA
* * * * * *
6541 ATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTG
195 AGAT-CTTTATTTTCATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATCTG
*** * **** ** * *
6605 CTCTGTTATAATCTCAGGGAGATCA-GATTCACCATTTTTTAT-TAGCTCCAC--TATTGCTTAG
258 CTCCACTGTAATCTCAGGGAGAT-AGGATT-ACTGGCTTCAATCT-GCTCCGCTGTAAT-CTTAG
* * * * * * * * *
6666 GGAGATAAGA-T--CTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCT-G-
319 GGAGATAAGATTCACTAGCTTCAATCA--G--CTCCACTGT-ATCTCAGGGAGATAAGATCTGGA
* * * * * * * * *** ** *
6726 A---TGCGATCTACTCTACTGTAA-CTTTAGAGAGATAAGATCTTTATTTTAATCCGCTCCACTG
379 ATTCTTCGATCTATTCCACTATAATC-TCAGGGAGATAAGA-CCTGA-TGCGATCTACTCTACTG
* * * *** * * * *
6787 TAATATCAG-GCAAATAGGATTAC-TGGCTTCAATTTGCTCCACTGTAATCTTAGGGAGATAGGA
441 TAAT-TCAGAG-AGATAAGA-TCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGA
* *** * *
6850 -TACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAGATTCACCGTCTTCGATCTGCTC
503 TTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TGCTC
* * * * * * * *
6914 CATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGTCTATTCCACAGTAATCTCATGGAGAT
567 CACTATTGCTTAGGGAGATAAGATCTGG-ATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGAT
* *
6979 AAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATTCATTTATTTTAATCCGTT
631 AAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGA-TCCTTTATTTTAATCCGTT
*
7044 CAA
695 CCA
* * * * * *
7047 CTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGGAGATCA
1 CTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAA
* * * *
7111 GATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTCAGTGTA
65 GATTCACCATTTTTAATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTA
* * * * *
7176 TTTCCGCT-TAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGAT
130 -TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGAT
* * * * * *
7240 AAGATCCTTTATTTTCATCTGCTCCACTATAATATTAGGGAAATAGGATTACTTGCTTCAATTTT
194 AAGAT-CTTTATTTTCATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTG
* * * * *
7305 CTCCGCTGTAATCTCAGGGAGAATAGG-TTACTGGGTTTAATCTGCTCCGCTGTAATCTCACGGA
258 CTCCACTGTAATCTCAGGGAG-ATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGA
* * * * * * * * **
7369 GATAGGATT-ACTGGCTTCAATCTGCTCCGCT-AATCTTATGGAGATAAGAT-T-CACCGTCTTC
322 GATAAGATTCACTAGCTTCAATCAGCTCCACTGTATCTCAGGGAGATAAGATCTGGA-ATTCTTC
** * * * * * *
7430 GATCTGCTCCACTAT--TGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAAT
386 GATCTATTCCACTATAAT-CTCAGGGAGATAAGACCT-G----ATGCGATCTACTCTACTGTAAT
* * * *** * * * ** *
7493 CTGAGGGAGATAAGA-CC-TGA-TGCGATCTACTCTACTGTAA-CTTCAGAGAGGTAAGATCCT-
445 -TCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATC-TCAGGGAAATAGGAT--TA
* *** * * * * * * * ** * *
7553 TTATATTTAATAATTCGCTCCACCGTAATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGCTC
506 CTGGCTTCAAT--CT-GCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TGCTC
* * * * * *
7617 CGCT-GTGATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTC-GGGAG
567 CACTATTG--CTTAGGGAGATAAGATCTG-GATTCTTCAGTCTATTCCACTGTAATCTCAGGGAG
* * *
7680 ATAAGACCAGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGT
629 ATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGT
7745 TCCA
694 TCCA
*
7749 CTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
* ** * * * *
7814 ATTCACC-GTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTAGAATTCTTCGGTCTAT
66 ATTCACCATTTTTAATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTAT
* * * * * * *
7878 TCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAA
131 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAA
* * * *
7943 GATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCT
196 GAT-CTTTATTTTCATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCT
* * * **** * * * *
8008 CCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTCGATTTGCTCCAC--TATTGCTTAGGGAG
260 CCACTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATCTGCTCCGCTGTAAT-CTTAGGGAG
* ** * * * *
8071 ATAAGATCTGGA-TTTCTTCAGTCTA-TTCCATTGTAATCTCAGGGAGATAAGACCT-G-A---T
323 ATAAGAT-T-CACTAGCTTCAATC-AGCTCCACTGT-ATCTCAGGGAGATAAGATCTGGAATTCT
* * * * * * * * ** *
8129 GCGATCTACTCTACTATAA-CTTTAGAGAGATAAGATCATTTATTTTC-ATCCGCTCCACTGTAA
384 TCGATCTATTCCACTATAATC-TCAGGGAGATAAGA-C-CTGA--TGCGATCTACTCTACTGTAA
* * * *** * * * *
8192 TCTCAG-GCAAATAGGATTAC-TGGCTTCAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTA
444 T-TCAGAG-AGATAAGA-TCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTA
* * *** *
8255 CTGGCTTCAATTTGCTCTGCTGTAATCTTTTGGAGATAAGATTCACCATCTTCGATCTGCTCCAC
506 CTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TGCTCCAC
* * * * * * * *
8320 TATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAG
570 TATTGCTTAGGGAGATAAGATCTGG-ATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAG
*
8385 ACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCA
634 ACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCA
* *
8449 CTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
** * * *
8514 ATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTAT
66 ATTCACCATTTTTAATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTAT
* * * * * *
8579 TCCACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAATTTCAGAGAGATAA
131 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAA
* * * * *
8644 GATCCATTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCT
196 GAT-CTTTATTTTCATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCT
* * * **** ** * * *
8709 CCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTCGTTTTGCTCCAC--TATTGCTTAGGGAG
260 CCACTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATCTGCTCCGCTGTAAT-CTTAGGGAG
* ** * * * *
8772 ATAAGATCTGGA-TTTCTTCAGTCTA-TTCCACTGTAATATCAGGGAGATAAGACCT-G-A---T
323 ATAAGAT-T-CACTAGCTTCAATC-AGCTCCACTGT-ATCTCAGGGAGATAAGATCTGGAATTCT
* * * * * * * ** * *
8830 GCGATCTACTCTACTATAA-CATTAGAGAGATAAGATCCTTTAGTTTCTTTC-GCTCCACTGTAA
384 TCGATCTATTCCACTATAATC-TCAGGGAGATAAGA-CC--T-GATGCGATCTACTCTACTGTAA
* * * *** * * * *
8893 TCTCAG-GCAAATAGGATTAC-TGGCTTAAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTA
444 T-TCAGAG-AGATAAGA-TCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTA
* *** * *
8956 CTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTCACCATCTTCGATCTGCTCCCC
506 CTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TGCTCCAC
* * * * * * *
9021 TATTG-TTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAA
570 TATTGCTT-AGGGAGATAAGATCTGG-ATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAA
*
9085 GACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCA
633 GACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCA
* * * * * *
9150 CTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGGAGATCA
1 CTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAA
* * * *
9214 GATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTCAGTGTA
65 GATTCACCATTTTTAATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTA
* * * * *
9279 TTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATA
130 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATA
* * * * *
9344 AGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAATAGGATTACTGGCTTCAATTTGC
195 AGAT-CTTTATTTTCATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGC
* * **
9409 TCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGA
259 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGA
* * * * * *
9474 TAAGATTCAC-CGTCTTCGATCTGCTCCA-T-TATTGCTCAGGAAGACAAGATCTGGAACTCTTC
324 TAAGATTCACTAG-CTTCAATCAGCTCCACTGTA-T-CTCAGGGAGATAAGATCTGGAATTCTTC
* *
9536 GGTCTATTCCAC-AGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAG
386 GATCTATTCCACTA-TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA-TTCAG
* * * * * * * *
9600 AGAGATAATATCATTTATTTTAATCCGTTCAACTGTAATCTCAGAGTAATAGGATTACTAGCATT
449 AGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TT
* * * * * * **
9665 -AATCTGCTCTGTTATAATATCAGGGAGATCAGATTCACGATTTTTTATTAGCTCCACTATTGCT
513 CAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATT-GCTCCACTATTGCT
* * * * *
9729 TAGGGAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGAT
577 TAGGGAGATAAGATCTGGA-TTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGAT
* * * *
9794 GCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCA
641 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCA
* * * * * *
9851 CTATAATATTAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCAGGGAGAT-AG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
* * **** * * * * * *
9915 GTTTACTGGGTTTAATCTGCTCCGCTGTAAT-CTCAGGGAGATAGGATTACTGG----CTTCAAT
66 ATTCACCATTTTTAATTTGCTCCAC--TATTGCTTAGGGAGATAAGA-T-CTGGATTTCTTCAGT
** * * * * * * * * **
9975 CTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGC-TCAG
127 CTATTCCACTGTAATCTCAGGGAGATAAGA--C-CTG-ATGCGATCTACTCTACTATAACTTCAG
* * ** * * ** * * * * *
10039 GGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAATCTGAGGGAGATAAGA--CCT-GAT
188 AGAGATAAGATCT-TTA-TTTTC-ATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCT
* * * * * * * * *** * * *
10101 GCGATCTACTCTACTGTAA-CTTCAGAGAGGTAAGA-TCCTTTATTTTAAT-TCGCTCCACCGTA
250 TCAATCTGCTCCACTGTAATC-TCAGGGAGATAGGATTAC-TGGCTTCAATCT-GCTCCGCTGTA
* *
10163 ATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGCTCCGCTGTGATCTCAGGGAGATAAGATCT
312 ATCTTAGGGAGATAAGATTCACTAGCTTCAATCAGCTCCACTGT-ATCTCAGGGAGATAAGATCT
* *
10227 GAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTG
376 GGAATTCTTCGATCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTG
* * *
10292 TAACTTAAGAGAGATAAGATCCTTTATTCTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATT
441 TAA-TTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATT
* *
10357 GCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCGTTTTCGATTAGCTCCA
505 ACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATT-GCTCCA
* * * * * *
10422 CTATTGCTTAGGGAGATAAGATCTGGAATTTTTCGGTCTATTCCAGTGGAATCTCAGGGAGTTTA
569 CTATTGCTTAGGGAGATAAGATCTGG-ATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAA
* * *
10487 GACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCA
633 GACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCA
* * *
10552 CTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
* *
10617 ATTCACAATTTTTGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTAT
66 ATTCACCATTTTTAATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTAT
* *
10682 TCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTTAGAGAGATAA
131 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAA
* * *
10747 GATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTTGCT
196 GATC-TTTATTTTCATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCT
* * **
10812 CCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGAT
260 CCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGAT
* * * * * * * * * * **
10877 AAGATTCACCATCTTCGATCTGCTCCCCTAT-TGTTCAGGAAGACAAGATCTGGAACTCTTCGGC
325 AAGATTCACTAGCTTCAATCAGCTCCACTGTAT-CTCAGGGAGATAAGATCTGGAATTCTTCGAT
*
10941 CTATTCCAC-AGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
389 CTATTCCACTA-TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA-TTCAGAGA
* * * * *
11005 GATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AA
452 GATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAA
* * * * **
11069 TCTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAG
516 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATT-GCTCCACTATTGCTTAG
* * * * *
11134 GGAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCG
580 GGAGATAAGATCTGGA-TTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCG
* *
11199 ATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
644 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCA
* * * * * *
11253 CTGTAATATCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCACTGTAATCTTAGGGAGATAGG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
**** * * * ** * **
11318 ATT-ACTGGCTTTAATCTGCTCCGCTGTAAT-CTTTTGGAGATAAGAT-T-CACCGTCTTC-GAT
66 ATTCACCATTTTTAATTTGCTCCAC--TATTGCTTAGGGAGATAAGATCTGGA-TTTCTTCAG-T
** * * * * * * * *
11378 CTGCTCCA-T-TATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGTCTATTCCAC-AGTAA-TC
127 CTATTCCACTGTAAT-CTCAGGGAGATAAGACCT-G-A---TGCGATCTACTCTACTA-TAACT-
* * * * * * * ** * *
11439 TCATG-GAGATAAGA-CCTGA--TGCGATCTACTCTACTGTAA-CTTCAGAGAGATAATATCATT
184 TCA-GAGAGATAAGATCTTTATTTTC-ATCTGCTCCACTGTAATC-TCAGGGAAATAGGATTACT
*** * * * * * * *
11499 TATTTTAATCCGTTCAACTGTAATCTCAGGGTA-ATAGGATTACTAGCATT-AATCTGCTCTGTT
246 GGCTTCAATCTGCTCCACTGTAATCTCAGGG-AGATAGGATTACTGGC-TTCAATCTGCTCCGCT
* * * * ** ** * * *
11562 ATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTAT-TGCTTAGGGAGATAAGA
309 GTAATCTTAGGGAGATAAGATTCACTAGCTTCAATCAGCTCCACTGTAT-CTCAGGGAGATAAGA
* * * * * * *
11626 TCTGGATTTATTC-AGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCT
373 TCTGGAATTCTTCGA-TCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
* * * * *
11690 ACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATATTAGGGAAATAG
437 ACTGTAA-TTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAG
* * * * * *** *
11755 GATTACTTGCTTCAATTTTCTCCGCTGTAATCTCAGGGAGAT-AGGTTTACTGGGTTT-AATCTG
501 GATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCAC-CATTTTCGAT-TG
* * * * * ** * * *
11818 CTCCGCTGTAAT-CTCAGGGAGATAGGATTACTGG---CTTCAATCTGCTCCGCTGTAATCTTAT
564 CTCCAC--TATTGCTTAGGGAGATAAGA-T-CTGGATTCTTCAGTCTATTCCACTGTAATCTCAG
* * * * * * ** * **
11879 GGAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGC-TCA-AGGAGACAAGAT-CTGGAAC
625 GGAGATAAGA--C-CTG-ATGCGATCTACTCTACTGTAACTTCAGA-GAGATAAGATCCT-TTA-
*** **
11941 TATTCGGTCTATTCCA
683 T-TTTAATCCGTTCCA
* * * * * * * * ** * *
11957 CTGTAATCTGAGGGAGATAAGA--CCT-GATGCGATCTACTCTACTGTAA-CTTCAGAGAGGTAA
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC-TCAGGGAGATAA
** * * * ** *
12018 GA-TC-CTTTATTTTAATTCGCTCCACCGTAAT-CTTAGGGAGATAGGAT-T--ACTAGCTTCAA
65 GATTCACCAT-TTTTAATTTGCTCCA-C-TATTGCTTAGGGAGATAAGATCTGGA-TTTCTTCAG
* * * * * * * *
12077 TC-AGCTCCGCTGTGATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAA-TC
126 TCTA-TTCCACTGTAATCTCAGGGAGATAAGACCTG--A---TGCGATCTACTCTACTATAACT-
* * * * * * * * * * * *
12140 TCAGGGAGATAAGA-CCTGA--TGCGATCTACTCTACTGTAA-CTTAAGAGAGATAAGA-TCCTT
184 TCAGAGAGATAAGATCTTTATTTTC-ATCTGCTCCACTGTAATC-TCAGGGAAATAGGATTACTG
** * * * *
12200 TATTCTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGT
247 GCTTC-AATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGT
* * * * * * *
12265 AATCTCAGGGAGATAAGATTCAC-CGTTTTCGATTAGCTCCACTAT-TGCTTAGGGAGATAAGAT
311 AATCTTAGGGAGATAAGATTCACTAG-CTTCAATCAGCTCCACTGTAT-CTCAGGGAGATAAGAT
* ** * * *
12328 CTGGAATTCTTCGATCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTAC
374 CTGGAATTCTTCGATCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
* * *
12393 TGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGA
439 TGT-AATTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGA
* * *
12458 TTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTTGATTTGCTC
503 TTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGA-TTGCTC
*
12523 CACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGAT
567 CACTATTGCTTAGGGAGATAAGATCTGGA-TTCTTCAGTCTATTCCACTGTAATCTCAGGGAGAT
* * * * *
12588 AAGACCTGATGCGATCTACTCTACTATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTC
631 AAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTC
12653 CA
696 CA
* * * *
12655 CTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCGCCGTAATCTCAGGGAGATAGG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
**** * * * ** * **
12720 ATT-ACTGGCTTCAATTTGCTCCGCTGTAAT-CTTTTGGAGATAAGAT-T-CACCATCTTC-GAT
66 ATTCACCATTTTTAATTTGCTCCAC--TATTGCTTAGGGAGATAAGATCTGGA-TTTCTTCAG-T
** * * * * * ** * *
12780 CTGCTCCAC--TATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCAC-AGTAA-TC
127 CTATTCCACTGTAAT-CTCAGGGAGATAAGACCT-G-A---TGCGATCTACTCTACTA-TAACT-
* * * * * * * * * *
12841 TCAGGGAAATAAGA-CCTGA--TGCGATCTACTCTACTGTAA-CTTCAGAGAGATA--ATATCCT
184 TCAGAGAGATAAGATCTTTATTTTC-ATCTGCTCCACTGTAATC-TCAGGGAAATAGGAT-TAC-
*** * * * * * *
12900 TTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTG
245 TGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTG
* * ** * * * *
12965 TAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTAT-TGCTTAGGGAGATAAGAT
310 TAATCTTAGGGAGATAAGATTCACTAGCTTCAATCAGCTCCACTGTAT-CTCAGGGAGATAAGAT
* ** * * *
13029 CTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTAC
374 CTGGAATTCTTCGATCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
* * * *
13094 TGTAATTTCAGAGAGATAAGATCCATTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGA
439 TGTAA-TTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGA
* * *
13159 TTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTCGTTTTGCTC
503 TTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCG-ATTGCTC
*
13224 CACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGAT
567 CACTATTGCTTAGGGAGATAAGATCTGGA-TTCTTCAGTCTATTCCACTGTAATCTCAGGGAGAT
* * ** * *
13289 AAGACCTGATGCGATCTACTCTACTATAACATT-AGAGAGATAAGATCCTTTAGTTTCTTTCGCT
631 AAGACCTGATGCGATCTACTCTACTGTAAC-TTCAGAGAGATAAGATCCTTTATTTTAATCCGTT
13353 CCA
695 CCA
* * * *
13356 CTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTTGCTCCGCTGTAATCTCAGGGAGATAGG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
**** * * * ** * **
13421 ATT-ACTGGCTTCAATTTGCTCCGCTGTAAT-CTTTTGGAGATAAGAT-T-CACCATCTTC-GAT
66 ATTCACCATTTTTAATTTGCTCCAC--TATTGCTTAGGGAGATAAGATCTGGA-TTTCTTCAG-T
** * * ** * * * * ** * *
13481 CTGCTCCCCTATTGT-TCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCAC-AGTAA-TCT
127 CTATTCCACTGTAATCTCAGGGAGATAAGACCT-G-A---TGCGATCTACTCTACTA-TAACT-T
* * * * * * * * * *
13543 CAGGGAAATAAGA-CCTGA--TGCGATCTACTCTACTGTAA-CTTCAGAGAGATA--ATATCCTT
185 CAGAGAGATAAGATCTTTATTTTC-ATCTGCTCCACTGTAATC-TCAGGGAAATAGGAT-TAC-T
*** * * * * * *
13602 TATTTTAATCCGTTCCACTGTAATCTCAGGGTA-ATAGGATTACTAGCATT-AATCTGCTCTGTT
246 GGCTTCAATCTGCTCCACTGTAATCTCAGGG-AGATAGGATTACTGGC-TTCAATCTGCTCCGCT
* * * * ** ** * * *
13665 ATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTAT-TGCTTAGGGAGATAAGA
309 GTAATCTTAGGGAGATAAGATTCACTAGCTTCAATCAGCTCCACTGTAT-CTCAGGGAGATAAGA
* * * * * * *
13729 TCTGGATTTATTC-AGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCT
373 TCTGGAATTCTTCGA-TCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
* * * *
13793 ACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAATAG
437 ACTGTAA-TTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAG
* * * *
13858 GATTACTGGCTTCAATTTGCTCCACTGTAATCTTAGGGAGATAGGATT
501 GATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
13906 ACTGGCTTTA
Statistics
Matches: 5696, Mismatches: 941, Indels: 441
0.80 0.13 0.06
Matches are distributed among these distances:
695 1 0.00
696 15 0.00
697 1 0.00
698 111 0.02
699 280 0.05
700 573 0.10
701 4004 0.70
702 309 0.05
703 216 0.04
704 168 0.03
705 17 0.00
706 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (697 bp):
CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
ATTCACCATTTTTAATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTAT
TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAA
GATCTTTATTTTCATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTC
CACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATA
AGATTCACTAGCTTCAATCAGCTCCACTGTATCTCAGGGAGATAAGATCTGGAATTCTTCGATCT
ATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAATTCAGAGAGATA
AGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGC
TCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTGCTCCACTATTGCTTAGGGAGAT
AAGATCTGGATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACT
CTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCA
Found at i:10877 original size:44 final size:44
Alignment explanation
Indices: 10765--10867 Score: 179
Period size: 44 Copynumber: 2.3 Consensus size: 44
10755 ATTTTCATCC
* * *
10765 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
10809 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
10853 GCTCCGCTGTAATCT
1 GCTCCGCTGTAATCT
10868 TTTGGAGATA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
Found at i:10881 original size:219 final size:219
Alignment explanation
Indices: 10160--10857 Score: 920
Period size: 219 Copynumber: 3.2 Consensus size: 219
10150 TCGCTCCACC
* * * * * *
10160 GTAATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGCTCCGCT-GTGATCTCAGGGAGATAAG
1 GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATG--CTTAGGGAGATAAG
* * *
10223 ATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
64 ATCTGGATTTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
*
10288 ACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCTGTTCCACTGTAATCTCAGGGAAATAG
129 ACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGAAATAG
*
10353 GATTGCTGGCTTCAATCTGCTCCGCT
194 GATTACTGGCTTCAATCTGCTCCGCT
* * * *
10379 GTAATCTCAGGGAGATAAGATTCAC-CGTTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGA
1 GTAATCTCAGGGAGATAAGATTCACTAG-CTTCAATTAGCTCCACTAATGCTTAGGGAGATAAGA
* * * * *
10443 TCTGGAATTT-TTCGGTCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCT
65 TCTGG-ATTTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
* * * *
10507 ACTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAG
129 ACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGAAATAG
10572 GATTACTGGCTTCAATCTGCTCCGCT
194 GATTACTGGCTTCAATCTGCTCCGCT
* * ** ** * *
10598 GTAATCTCAGGGAGAGAAGATTCACAATTTTTGATTTGCTCCACTATTGCTTAGGGAGATAAGAT
1 GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATGCTTAGGGAGATAAGAT
* *
10663 CTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
66 CTGGATTTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
* * * * * * *
10728 TATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGA
131 TGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGAAATAGGA
*
10793 TTACTGGCTTCAATTTGCTCCGCT
196 TTACTGGCTTCAATCTGCTCCGCT
* * *
10817 GTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATTTGCTCC
1 GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCC
10858 GCTGTAATCT
Statistics
Matches: 420, Mismatches: 53, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
218 17 0.04
219 383 0.91
220 18 0.04
221 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (219 bp):
GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATGCTTAGGGAGATAAGAT
CTGGATTTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
TGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGAAATAGGA
TTACTGGCTTCAATCTGCTCCGCT
Found at i:11047 original size:219 final size:218
Alignment explanation
Indices: 10809--11320 Score: 643
Period size: 219 Copynumber: 2.3 Consensus size: 218
10799 GCTTCAATTT
* **
10809 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGA
1 GCTCCACTGTAATCTCAGGGA-ATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGA
* *
10874 GATAAGATTCACCATCTTCGATCT-GCTCCCCTATTG-TTCAGGAAGACAAGATCTGGAACTCTT
65 GATAAGATTCACCATCTTCGAT-TAGCTCCACTATTGCTT-AGGAAGACAAGATCTGGAACTATT
* *
10937 CGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAG
128 CAGCCTATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAG
*
11002 AGAGATAATATCCTTTATTTTAATCC
193 AGAGATAAGATCCTTTATTTTAATCC
* * * * * * *
11028 GTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGG
1 GCTCCACTGTAATCTCAGGG-AATAGGATTACTGGC-TTCAATTTGCTCCGCTGTAATCTTAGGG
* * ** * * **
11092 AGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTC
64 AGATAAGATTCACCATCTTCGATTAGCTCCACTATTGCTTAGGAAGACAAGATCTGGAACTATTC
** * * * * *
11157 AGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGA
129 AGCCTATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
11222 GAGATAAGATCCTTTATTTTAATCC
194 GAGATAAGATCCTTTATTTTAATCC
* * *
11247 GCTCCACTGTAATATCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCACTGTAATCTTAGGGA
1 GCTCCACTGTAATCTCAGG-GAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGA
*
11312 GATAGGATT
65 GATAAGATT
11321 ACTGGCTTTA
Statistics
Matches: 245, Mismatches: 42, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
218 3 0.01
219 237 0.97
220 5 0.02
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (218 bp):
GCTCCACTGTAATCTCAGGGAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGAG
ATAAGATTCACCATCTTCGATTAGCTCCACTATTGCTTAGGAAGACAAGATCTGGAACTATTCAG
CCTATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
GATAAGATCCTTTATTTTAATCC
Found at i:11348 original size:44 final size:44
Alignment explanation
Indices: 11239--11364 Score: 153
Period size: 44 Copynumber: 2.9 Consensus size: 44
11229 GATCCTTTAT
* * * * *
11239 TTTAATCCGCTCCACTGTAATATCAGGCAAATAGGATTACTGGC
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
* *
11283 TTCAATTTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
* ** *
11327 TTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAGATT
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATT
11365 CACCGTCTTC
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 69 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
Found at i:11456 original size:263 final size:262
Alignment explanation
Indices: 11034--12104 Score: 922
Period size: 263 Copynumber: 4.1 Consensus size: 262
11024 ATCCGTTCCA
* * * * * *
11034 CTGTAATCTCAGGGTA-ATAGGATTACTAGCATTAATCTGCTCTGTTATAATCTCAGGGAGATCA
1 CTGTAATCTCAGGG-AGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAGGGAGATAA
* * ** * * ** * *
11098 GATTCACCATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTCAGTGT
65 GATTCACCGTCTTCGATCT-GCTCCACTATTGCTCA-GGAGACAAGATCTGGAACTATTCGGTCT
* * *
11162 ATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGAT
128 ATTCCACTGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGAT
* * * *
11227 AAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAATAGGATTACTGGCTTCAATTTG
193 AAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTG
*
11292 CTCCA
258 CTCCG
* * **
11297 CTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAGGGAGATAAG
* *
11362 ATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGTCTAT
66 ATTCACCGTCTTCGATCTGCTCCACTATTGCTCAGG-AGACAAGATCTGGAACTATTCGGTCTAT
*
11427 TCCACAGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
130 TCCACTGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
* * * * *
11492 TATCATTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGC
195 GATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGC-TTCAATCTGC
*
11556 TCTG
259 TCCG
* * * ** * * *
11560 TTATAATCTCAGGGAGATCA-GATTCACCATTTTTTAT-TAGCTCCAC--TATTGCTTAGGGAGA
1 CTGTAATCTCAGGGAGAT-AGGATT-ACTAGCTTTAATCT-GCTCCGCTGTAAT-CTTAGGGAGA
* ** * * ** * * * * *
11621 TAAGATCTGGA-TTTATTC-AGTGTATTCCGCTGTAAT-CGCATGGAGATAAGACCT-G----AT
62 TAAGAT-T-CACCGTCTTCGA-TCTGCTCCAC--TATTGCTCA-GGAGACAAGATCTGGAACTAT
* * * * * * * * * *
11678 GCGATCTACTCTACTGTAA-CT-TTAGAGAGATAAGATCCTTTATTTTC-ATCTGCTCCACTATA
121 TCGGTCTATTCCACTGTAATCTCAT-G-GAGATAAGA-CC-TGA--TGCGATCTACTCTACTGTA
* * * * * ** * *** * * *
11740 A-TATTAGGGAAATAGGATTAC-TTGCTTCAATTTTCTCCGCTGTAATCTCAGGGAGATAGGTTT
180 ACT-TCAGAGAGATAAGA-TCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATT
* * *
11803 ACTGGGTTTAATCTGCTCCG
243 ACTAGCTTCAATCTGCTCCG
* * *
11823 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAGGGAGATAAG
11888 ATTCACCGTCTTCGATCTGCTCCACTATTGCTCAAGGAGACAAGATCTGGAACTATTCGGTCTAT
66 ATTCACCGTCTTCGATCTGCTCCACTATTGCTC-AGGAGACAAGATCTGGAACTATTCGGTCTAT
* * *
11953 TCCACTGTAATCTGAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAA
130 TCCACTGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
* * * * *
12018 GATCCTTTATTTTAATTCGCTCCACCGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCAGCT
195 GATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCT
12083 CCG
260 CCG
*
12086 CTGTGATCTCAGGGAGATA
1 CTGTAATCTCAGGGAGATA
12105 AGATCTGAAA
Statistics
Matches: 617, Mismatches: 150, Indels: 82
0.73 0.18 0.10
Matches are distributed among these distances:
258 1 0.00
259 3 0.00
260 27 0.04
261 16 0.03
262 41 0.07
263 443 0.72
264 37 0.06
265 15 0.02
266 31 0.05
267 3 0.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (262 bp):
CTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAGGGAGATAAG
ATTCACCGTCTTCGATCTGCTCCACTATTGCTCAGGAGACAAGATCTGGAACTATTCGGTCTATT
CCACTGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAG
ATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTC
CG
Found at i:11631 original size:219 final size:217
Alignment explanation
Indices: 11291--11797 Score: 602
Period size: 219 Copynumber: 2.3 Consensus size: 217
11281 GCTTCAATTT
* * ***
11291 GCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGA
1 GCTCAACTGTAATCTTAGGGA-ATAGGATTACTAGC-TTAATCTGCTCCGCTGTAATCTCAGGGA
* * * *
11356 GATAAGATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCG
64 GATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTCA
*
11421 GTCTATTCCACAGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
129 GTCTATTCCACAGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
*
11486 AGATAATATCATTTATTTTAATCC
194 AGATAAGATCATTTATTTTAATCC
* * * * *
11510 GTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCTCTGTTATAATCTCAGGGA
1 GCTCAACTGTAATCTTAGGG-AATAGGATTACTAGC-TTAATCTGCTCCGCTGTAATCTCAGGGA
* * ** * * * **
11575 GATCAGATTCACCATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTC
64 GATAAGATTCACCATCTTCGATCT-GCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTC
* * * *
11639 AGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGA
128 AGTCTATTCCACAGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
* * *
11704 GAGATAAGATCCTTTATTTTCATCT
193 GAGATAAGATCATTTATTTTAATCC
* * * * * *
11729 GCTCCACTATAATATTAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCAGGGA
1 GCTCAACTGTAATCTTAGGG-AATAGGATTACTAGCTT-AATCTGCTCCGCTGTAATCTCAGGGA
11794 GATA
64 GATA
11798 GGTTTACTGG
Statistics
Matches: 239, Mismatches: 46, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
218 3 0.01
219 235 0.98
220 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (217 bp):
GCTCAACTGTAATCTTAGGGAATAGGATTACTAGCTTAATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTCAGT
CTATTCCACAGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
ATAAGATCATTTATTTTAATCC
Found at i:11822 original size:44 final size:44
Alignment explanation
Indices: 11725--11910 Score: 210
Period size: 44 Copynumber: 4.2 Consensus size: 44
11715 CTTTATTTTC
* * * * * *
11725 ATCTGCTCCACTATAATATTAGGGAAATAGGATTACTTGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
* * * * *
11769 ATTTTCTCCGCTGTAATCTCAGGGAGATAGGTTTACTGGGTTTA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
11813 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
* * * * * *
11857 ATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGTCTTCG
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCA
11902 ATCTGCTCC
1 ATCTGCTCC
11911 ACTATTGCTC
Statistics
Matches: 119, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 103 0.87
45 16 0.13
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.34
Consensus pattern (44 bp):
ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
Found at i:11845 original size:88 final size:88
Alignment explanation
Indices: 11725--11885 Score: 232
Period size: 88 Copynumber: 1.8 Consensus size: 88
11715 CTTTATTTTC
* * * *
11725 ATCTGCTCCACTATAATATTAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCA
1 ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCA
11790 GGGAGATAGGTTTACTGGGTTTA
66 GGGAGATAGGTTTACTGGGTTTA
* * * * *
11813 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTA
1 ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCA
*
11878 TGGAGATA
66 GGGAGATA
11886 AGATTCACCG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 63 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (88 bp):
ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCA
GGGAGATAGGTTTACTGGGTTTA
Found at i:12003 original size:482 final size:479
Alignment explanation
Indices: 10333--12284 Score: 2252
Period size: 482 Copynumber: 4.1 Consensus size: 479
10323 ATCTGTTCCA
* * * ***
10333 CTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* * * * *
10398 ATTCACCGTTTTCGAT-TAGCTCCAC-TATTGCTTAGGGAGATAAGATCTGGAATTTTTCGGTCT
66 ATTCACCGTCTTCGATCT-GCTCC-CTTATT-CTTAGGAAGACAAGATCTGGAACTCTTCGGTCT
* * * * * *
10461 ATTCCA-GTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGA
128 ATTCCACAT--AATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGA
* * * * * * *
10525 TAAGATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGC-TTCAATC
191 TAATATCC-TTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATC
* ** * * *
10589 TGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTTGATTTGCTCCACTATTGCTTAGGG
254 TGCTCCGCTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGG
* * *
10654 AGATAAGATCTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGAT
319 AGATAAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCGAT
* * * *
10719 CTACTCTACTATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGG
384 CTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGG
10784 CAAATAGGATTACTGGCTTCAATTTGCTCCG
449 CAAATAGGATTACTGGCTTCAATTTGCTCCG
* *
10815 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* * * *
10880 ATTCACCATCTTCGATCTGCTCCCCTATTGTTCAGGAAGACAAGATCTGGAACTCTTCGGCCTAT
66 ATTCACCGTCTTCGATCTGCTCCCTTATTCTT-AGGAAGACAAGATCTGGAACTCTTCGGTCTAT
* *
10945 TCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
130 TCCACA-TAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
*
11010 TATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCT
194 TATCC-TTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCT
* *
11075 CTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
258 CCGCTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
* * *
11140 AAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTAC
323 AAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCGATCTAC
11205 TCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAA
388 TCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAA
*
11270 TAGGATTACTGGCTTCAATTTGCTCCA
453 TAGGATTACTGGCTTCAATTTGCTCCG
*
11297 CTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* *
11362 ATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGTCTAT
66 ATTCACCGTCTTCGATCTGCTCCCTTATT-CTTAGGAAGACAAGATCTGGAACTCTTCGGTCTAT
*
11427 TCCACAGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
130 TCCACA-TAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
*
11492 TATCATTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCT
194 TATC-CTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCT
* *
11557 CTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
258 CCGCTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
* * *
11622 AAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTAC
323 AAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCGATCTAC
* * * * *
11687 TCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATATTAGGGAAA
388 TCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAA
* *
11752 TAGGATTACTTGCTTCAATTTTCTCCG
453 TAGGATTACTGGCTTCAATTTGCTCCG
* * *** *
11779 CTGTAATCTCAGGGAGATAGGTTTACTGGGTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAGG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* * * * * * * *
11844 ATT-ACTGGCTTCAATCTGCTCCGCTGTAATCTTATGG-AGATAAGAT-T-CACCGTCTTCGATC
66 ATTCACCGTCTTCGATCTGCTCC-CT-TATTCTTA-GGAAGACAAGATCTGGAAC-TCTTCGGTC
** * * * * * * * *
11905 TGCTCCAC-TATTGCTCAAGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAA-TCTGA
127 TATTCCACATAAT-CTCAAGGAGATAAGACCT-G----ATGCGATCTACTCTACTGTAACT-TCA
* * * *** *** * * * * *
11968 GGGAGATAAGA-CCTGA-TGCGATCTACTCTACTGTAA-CTTCAGAG-AGGTAAGATCCT-TTA-
185 GAGAGATAATATCCTTATTTTAATCCGTTCAACTGTAATC-TCAGGGTA-ATAGGAT--TACTAG
** * ** * * ** ** * *
12027 TTTTAAT-TCGCTCCACCGTAATCTTAGGGAGAT-AGGATT-ACTAGCTTCAATCAGCTCCGCT-
246 CATTAATCT-GCTCCGCTATAATCTCAGGGAGATCA-GATTCACCATTTTTTATTAGCTCCACTA
* * * * * * * *
12088 GTGATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAG
309 TTG--CTTAGGGAGATAAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAG
* * *
12153 ACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCAC
372 ACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCAC
* * * *
12218 TGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCG
437 TGTAATATCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCG
*
12261 CTGTAATCTCAGGGAGATAAGATT
1 CTGTAATCTCAGGGAGATAGGATT
12285 CACCGTTTTC
Statistics
Matches: 1294, Mismatches: 149, Indels: 54
0.86 0.10 0.04
Matches are distributed among these distances:
479 3 0.00
480 19 0.01
481 54 0.04
482 1173 0.91
483 13 0.01
484 4 0.00
485 28 0.02
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (479 bp):
CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
ATTCACCGTCTTCGATCTGCTCCCTTATTCTTAGGAAGACAAGATCTGGAACTCTTCGGTCTATT
CCACATAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATA
TCCTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCTCCG
CTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGATAAG
ATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCGATCTACTCT
ACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAATAG
GATTACTGGCTTCAATTTGCTCCG
Found at i:12056 original size:85 final size:85
Alignment explanation
Indices: 11952--12231 Score: 251
Period size: 85 Copynumber: 3.2 Consensus size: 85
11942 ATTCGGTCTA
* *
11952 TTCCACTGTAATCTGAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
12017 AGATCCTTTATTTTAATTCG
66 AGATCCTTTATTTTAATTCG
* * * * * * * * ** * *
12037 CTCCACCGTAATCTTAGGGAGATAGGATTACTAGCTTCAATC-AGCTCCGCTGTGA-TCTCAGGG
1 TTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGCGATCTA-CTCTACTGTAACT-TCAGAG
** *** *
12100 AGATAAGAT-CTGAAATTCTTCGGTCTA
61 AGATAAGATCCT-TTATT-TTAATTC-G
* *
12127 TTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
* *
12192 AGATCCTTTATTCTAATCCG
66 AGATCCTTTATTTTAATTCG
12212 TTCCACTGTAATCTCAGGGA
1 TTCCACTGTAATCTCAGGGA
12232 AATAGGATTG
Statistics
Matches: 142, Mismatches: 42, Indels: 22
0.69 0.20 0.11
Matches are distributed among these distances:
85 42 0.30
86 2 0.01
87 36 0.25
88 36 0.25
89 4 0.03
90 22 0.15
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (85 bp):
TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCCTTTATTTTAATTCG
Found at i:12124 original size:175 final size:175
Alignment explanation
Indices: 11918--12283 Score: 561
Period size: 175 Copynumber: 2.1 Consensus size: 175
11908 TCCACTATTG
* * * * *
11918 CTCAAGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAATCTGAGGGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
* * * *
11983 ATGCGATCTACTCTACTGTAACTTCAGAGAGGTAAGATCCTTTATTTTAATTCGCTCCACCGTAA
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACCGTAA
* * *
12048 TCTTAGGGAGATAGGATTACTAGCTTCAATCAGCTCCGCTGTGAT
131 TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
* *
12093 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
* *
12158 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAA
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACCGTAA
* * *
12223 TCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAAT
131 TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
12268 CTCAGGGAGATAAGAT
1 CTCAGGGAGATAAGAT
12284 TCACCGTTTT
Statistics
Matches: 172, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
175 172 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (175 bp):
CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACCGTAA
TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
Found at i:12222 original size:219 final size:219
Alignment explanation
Indices: 12036--12741 Score: 934
Period size: 219 Copynumber: 3.2 Consensus size: 219
12026 ATTTTAATTC
* * * * * * *
12036 GCTCCACCGTAATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGCTCCGCT-GTGATCTCAGG
1 GCTCCGCCGTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTATTG--CTTAGG
* *
12099 GAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGA
64 GAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGA
*
12164 TCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCTCAG
129 TCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAG
*
12229 GGAAATAGGATTGCTGGCTTCAATCT
194 GGAAATAGGATTACTGGCTTCAATCT
* * * *
12255 GCTCCGCTGTAATCTCAGGGAGATAAGATTCAC-CGTTTTCGATTAGCTCCACTATTGCTTAGGG
1 GCTCCGCCGTAATCTCAGGGAGATAAGATTCACTAG-CTTCAATTAGCTCCACTATTGCTTAGGG
* * * * * *
12319 AGATAAGATCTGGAATTCTTCGATCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAAT
65 AGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGAT
* * * * *
12384 CTACTCTACTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATCTAAGG
130 CTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGG
12449 GAAATAGGATTACTGGCTTCAATCT
195 GAAATAGGATTACTGGCTTCAATCT
* * * ** ** *
12474 GCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTTGATTTGCTCCACTATTGCTTAGGGA
1 GCTCCGCCGTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTATTGCTTAGGGA
* * *
12539 GATAAGATCTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATC
66 GATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATC
* * * * * *
12604 TACTCTACTATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGC
131 TACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGG
*
12669 AAATAGGATTACTGGCTTCAATTT
196 AAATAGGATTACTGGCTTCAATCT
* * *
12693 GCTCCGCCGTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATTTGCTCC
1 GCTCCGCCGTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCC
12742 GCTGTAATCT
Statistics
Matches: 424, Mismatches: 59, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
218 13 0.03
219 394 0.93
220 15 0.04
221 2 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (219 bp):
GCTCCGCCGTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTATTGCTTAGGGA
GATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATC
TACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGG
AAATAGGATTACTGGCTTCAATCT
Found at i:12667 original size:394 final size:393
Alignment explanation
Indices: 11826--12545 Score: 910
Period size: 394 Copynumber: 1.8 Consensus size: 393
11816 TGCTCCGCTG
* * * * * * * *
11826 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATT
1 TAATCTCAGAGAAATAAGATTGCTAGCTTCAATCCGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
11891 CACCGTCTTCGATCTGCTCCACTATTGCTCAAGGAGACAAGATCTGGAACTATTCGGTCTATTCC
66 CACCGTCTTCGATCTGCTCCACTATTGCTCAAGGAGACAAGATCTGGAACTATTCGATCTATTCC
* * * * *
11956 ACTGTAATCTGAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAAGAT
131 ACTGGAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAAGAT
* * *
12021 CCTTTATTTTAATTCGCTCCACCGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCAGCTCCG
196 CCTTTATTTTAATTCGCTCCACCATAATCTAAGGGAAATAGGATTACTAGCTTCAATCAGCTCCG
* * * * *
12086 CTGTGATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATA
261 CTGTAATCTCAGGGAGAGAAGATCTCAAATTCTTCGATCTACTCCACTAT-ATCTCAGGGAGATA
* * * * **
12151 AGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCC
325 AGACCTGATGCCATCTACTCCACTGTAACTTAAGAGAGATAAGATCCTTGATGCTAATCCACTCC
*
12216 ACTG
390 ACTA
* * * *
12220 TAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
1 TAATCTCAGAGAAATAAGATTGCTAGCTTCAATCCGCTCCGCTGTAATCTCAGGGAGATAAGATT
* * * * * *
12285 CACCGTTTTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGATCTATTC
66 CACCGTCTTCGATCT-GCTCCACTATTGCTCAAGGAGACAAGATCTGGAACTATTCGATCTATTC
* * *
12349 CAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAAGA
130 CACTGGAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAAGA
* * * *
12414 TCCTTTATTTTAA-TCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTC
195 TCCTTTATTTTAATTC-GCTCCACCATAATCTAAGGGAAATAGGATTACTAGCTTCAATCAGCTC
* * * *
12478 CGCTGTAATCTCAGGGAGAGAAGAT-TCACAATT-TTTGATTTGCTCCACTAT-TGCTTAGGGAG
259 CGCTGTAATCTCAGGGAGAGAAGATCTCA-AATTCTTCGATCTACTCCACTATAT-CTCAGGGAG
12540 ATAAGA
322 ATAAGA
12546 TCTGGATTTC
Statistics
Matches: 287, Mismatches: 35, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
391 1 0.00
392 14 0.05
393 18 0.06
394 254 0.89
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (393 bp):
TAATCTCAGAGAAATAAGATTGCTAGCTTCAATCCGCTCCGCTGTAATCTCAGGGAGATAAGATT
CACCGTCTTCGATCTGCTCCACTATTGCTCAAGGAGACAAGATCTGGAACTATTCGATCTATTCC
ACTGGAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAAGAT
CCTTTATTTTAATTCGCTCCACCATAATCTAAGGGAAATAGGATTACTAGCTTCAATCAGCTCCG
CTGTAATCTCAGGGAGAGAAGATCTCAAATTCTTCGATCTACTCCACTATATCTCAGGGAGATAA
GACCTGATGCCATCTACTCCACTGTAACTTAAGAGAGATAAGATCCTTGATGCTAATCCACTCCA
CTA
Found at i:12743 original size:263 final size:263
Alignment explanation
Indices: 12439--12985 Score: 797
Period size: 263 Copynumber: 2.1 Consensus size: 263
12429 TGTTCCACTA
* *
12439 TAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATT
1 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATT
* * * * * * ** *
12504 CACAATTTTTGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCC
66 CACAATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCAGCCTATTCC
** * *
12569 ATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTTAGAGAGATAAGAT
131 ACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGAT
* *
12634 CATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCG
196 CATTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATCTGCTCCG
12699 CCG
261 CCG
* *** *
12702 TAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATT
1 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATT
* *
12767 CACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCC
66 CACAATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCAGCCTATTCC
* *
12832 ACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATAT
131 ACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGAT
* * * * *
12897 CCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTG
196 CATTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATCTGCTCCG
*
12962 CTG
261 CCG
*
12965 TAATCTCAGGGAGATAAGATT
1 TAATCTCAGGGAGATAGGATT
12986 CACCATTTTC
Statistics
Matches: 251, Mismatches: 33, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
263 251 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (263 bp):
TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATT
CACAATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCAGCCTATTCC
ACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGAT
CATTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATCTGCTCCG
CCG
Found at i:12761 original size:44 final size:44
Alignment explanation
Indices: 12657--12751 Score: 163
Period size: 44 Copynumber: 2.2 Consensus size: 44
12647 CCGCTCCACT
* *
12657 GTAATCTCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCGCC
1 GTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCC
*
12701 GTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCT
1 GTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCC
12745 GTAATCT
1 GTAATCT
12752 TTTGGAGATA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (44 bp):
GTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCC
Found at i:13196 original size:482 final size:482
Alignment explanation
Indices: 12217--13197 Score: 1482
Period size: 482 Copynumber: 2.0 Consensus size: 482
12207 ATCCGTTCCA
* *
12217 CTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
* * * * * * *
12282 ATTCACCGTTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGATCTAT
66 ATTCACCATCTTCGATTAGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGACCTAT
** ** *
12347 TCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAA
131 TCCACAGGAATCTCAGGGAAATAAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAA
*
12412 GATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCT
196 GATCCTTTATTTTAATCCGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCT
* *
12477 CCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTTGATTTGCTCCACTATTGCTTAGGGAGAT
261 CCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTCGATTAGCTCCACTATTGCTTAGGGAGAT
* * * *
12542 AAGATCTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTAC
326 AAGATCTGGAATTCTTCAGTCTATTCCACTGGAATCTCAGGGAGATAAGACCTGATGCAATCTAC
* * *
12607 TCTACTATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAA
391 TCTACTATAACTTTAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTATAATCTAAGGCAAA
*
12672 TAGGATTACTGGCTTCAATTTGCTCCG
456 TAGGATTACTGGCTTCAATCTGCTCCG
* * ***
12699 CCGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
*
12764 ATTCACCATCTTCGATCT-GCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGCCTA
66 ATTCACCATCTTCGAT-TAGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGACCTA
* * *
12828 TTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
130 TTCCACAGGAATCTCAGGGAAATAAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATA
* * * *
12893 ATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGC
195 AGATCCTTTATTTTAATCCGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGC
* * *
12958 TCTGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGA
260 TCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTCGATTAGCTCCACTATTGCTTAGGGAGA
* * *
13023 TAAGATCTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTA
325 TAAGATCTGGAATTCTTCAGTCTATTCCACTGGAATCTCAGGGAGATAAGACCTGATGCAATCTA
* * * *
13088 CTCTACTGTAA-TTTCAGAGAGATAAGATCCA-TTATTTTAATCTGTTCCACTATAATCTAAGGG
390 CTCTACTATAACTTT-AGAGAGATAAGAT-CATTTATTTTAATCCGCTCCACTATAATCTAAGGC
13151 AAATAGGATTACTGGCTTCAATCTGCTCCG
453 AAATAGGATTACTGGCTTCAATCTGCTCCG
13181 CTGTAATCTCAGGGAGA
1 CTGTAATCTCAGGGAGA
13198 GAAGATTCAC
Statistics
Matches: 447, Mismatches: 49, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
481 3 0.01
482 441 0.99
483 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (482 bp):
CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
ATTCACCATCTTCGATTAGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGACCTAT
TCCACAGGAATCTCAGGGAAATAAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAA
GATCCTTTATTTTAATCCGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCT
CCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTCGATTAGCTCCACTATTGCTTAGGGAGAT
AAGATCTGGAATTCTTCAGTCTATTCCACTGGAATCTCAGGGAGATAAGACCTGATGCAATCTAC
TCTACTATAACTTTAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTATAATCTAAGGCAAA
TAGGATTACTGGCTTCAATCTGCTCCG
Found at i:13243 original size:482 final size:479
Alignment explanation
Indices: 12422--14431 Score: 2023
Period size: 482 Copynumber: 4.2 Consensus size: 479
12412 GATCCTTTAT
* * *
12422 TTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
1 TTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
* * * * * * *
12487 CTCAGGGAGAGAAGATTCACAATTTTTGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGA
66 CTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTTAGGAAGACAAGATCTGGA
** * ** *
12552 TTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAA
131 ACTCTTCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA
* * * *
12617 CTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACT
196 CTTCAGAGAGATAAGATCATTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACT
* * ** * **** ** * *
12682 GGC-TTCAATTTGCTCCGCCGTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATTTGCTCCGCT
261 AGCATT-AATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTTTTATTAGCTCCAC-
* ** * * * * *
12745 GTAAT-CTTTTGGAGATAAGAT-T-CACCATCTTC-GATCTGCTCCAC-TATTGCTCAGGAAGAC
324 -TATTGCTTAGGGAGATAAGATCTGCA-CTTCTTCAG-TCTACTCCACGTAAT-CTCAGGGAGAT
* * ** * * * *
12805 AAGATCTGGAACTCTTCGGCCTATTCCACAGTAATC-TCAGGGAAATAAGA-CC-TGATGCGATC
385 AAGACCT-G-A---TGCGATCTACTCCACAGTAA-CATCAGAGAGATAAGATCCTTGATGCAATC
* * * * *
12867 TACTCTACTGTAACT-TCAGAG-AGATA-ATATCCTTTAT
444 TACTCCACTGTAA-TATCAG-GCAAATAGAT-TAC-TGAC
* * * *
12904 TTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAAT
1 TTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
* * *
12969 CTCAGGGAGATAAGATTCACCATTTTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGG
66 CTCAGGGAGATAAGATTCACCATCTTCGATCT-GCTCCACTATTGCTTAGGAAGACAAGATCTGG
* * * * * *
13033 AATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTA
130 AACTCTTCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTA
* * * *
13098 ATTTCAGAGAGATAAGATCCA-TTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTA
195 ACTTCAGAGAGATAAGAT-CATTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTA
* * * *
13162 CTGGC-TTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTCGTT-TT-GCTC
259 CTAGCATT-AATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTT--TTATTAGCTC
* * * *
13224 CACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGAT
321 CACTATTGCTTAGGGAGATAAGATCTGCACTTCTTCAGTCTACTCCAC-GTAATCTCAGGGAGAT
* * * * ** *
13289 AAGACCTGATGCGATCTACTCTACTA-TAACATTAGAGAGATAAGATCCTTTAGTTTCTTTC-GC
385 AAGACCTGATGCGATCTACTCCAC-AGTAACATCAGAGAGATAAGATCC-TT-GATGCAATCTAC
* *
13352 TCCACTGTAATCTCAGGCAAATAGGATTACTGGC
447 TCCACTGTAATATCAGGCAAATA-GATTACTGAC
* * * * *
13386 TTAAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAAT
1 TTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
*** *
13451 CTTTTGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTATTG-TTCAGGAAGACAAGATCTGG
66 CTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTT-AGGAAGACAAGATCTGG
* *
13515 AACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTA
130 AACTCTTCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTA
* * *
13580 ACTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTAC
195 ACTTCAGAGAGATAAGATCATTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTAC
* * *
13645 TAGCATTAATCTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACT
260 TAGCATTAATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTTTTATTAGCTCCACT
* * * * * * * *
13710 ATTGCTTAGGGAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGA
325 ATTGCTTAGGGAGATAAGATCTGCACTTCTTCAGTCTACTCCAC-GTAATCTCAGGGAGATAAGA
* * * * * ** **
13775 CCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACT
389 CCTGATGCGATCTACTCCACAGTAACATCAGAGAGATAAGATCCTTGA-TGCAATCTACTCCACT
*
13840 GTAATATCAGGCAAATAGGATTACTGGC
453 GTAATATCAGGCAAATA-GATTACTGAC
* * * * *
13868 TTCAATTTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAAT
1 TTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
*** * * *
13933 CTTTTGGAGATAAGATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGA
66 CTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTTAGGAAGACAAGATCTGGA
**
13998 ACTCTTCGGTCTATTCCACAGTAATCTCATAGAGATAAGACCTGATGCGATCTACTCTACTGTAA
131 ACTCTTCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA
* * *
14063 CTTCAGAGAGATAATATCATTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACT
196 CTTCAGAGAGATAAGATCATTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACT
* * *
14128 AGCATTAATCTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTA
261 AGCATTAATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTTTTATTAGCTCCACTA
* * * * * * * *
14193 TTGCTTAGGGAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGAC
326 TTGCTTAGGGAGATAAGATCTGCACTTCTTCAGTCTACTCCAC-GTAATCTCAGGGAGATAAGAC
* * * * * * *
14258 CTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTC-ATCTGCTCCACT
390 CTGATGCGATCTACTCCACAGTAACATCAGAGAGATAAGATCCTTGA--TGCAATCTACTCCACT
* * *
14322 ATAATATTAGGGAAATAGGATTACTTG-C
453 GTAATATCAGGCAAATA-GATTAC-TGAC
* * * * * * * *
14350 TTCAATTTTCTCCGCTGTAATCTCAGGGAGATAGGTTTACTGGGTTTAATCTGCTCCGCTGTAAT
1 TTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
*
14415 CTCAGGGAGATAGGATT
66 CTCAGGGAGATAAGATT
14432 ACTGGCTTCA
Statistics
Matches: 1347, Mismatches: 148, Indels: 66
0.86 0.09 0.04
Matches are distributed among these distances:
478 1 0.00
479 24 0.02
480 5 0.00
481 17 0.01
482 1234 0.92
483 43 0.03
484 20 0.01
485 3 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (479 bp):
TTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
CTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTTAGGAAGACAAGATCTGGA
ACTCTTCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA
CTTCAGAGAGATAAGATCATTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACT
AGCATTAATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTTTTATTAGCTCCACTA
TTGCTTAGGGAGATAAGATCTGCACTTCTTCAGTCTACTCCACGTAATCTCAGGGAGATAAGACC
TGATGCGATCTACTCCACAGTAACATCAGAGAGATAAGATCCTTGATGCAATCTACTCCACTGTA
ATATCAGGCAAATAGATTACTGAC
Found at i:13450 original size:263 final size:263
Alignment explanation
Indices: 13124--13680 Score: 733
Period size: 263 Copynumber: 2.1 Consensus size: 263
13114 ATCCATTATT
* * * *
13124 TTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC
1 TTAATCTGCTCCGCTATAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC
* * * * *
13189 TCAGGGAGAGAAGATTCACAATTTTCGTTTTGCTCCACTATTGCTT-AGGGAGATAAGATCTGGA
66 TCAGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTG-TTCAGGAAGACAAGATCTGGA
** * * *
13253 TTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAA
130 ACTCTTCAGCCTATTCCACAGTAATATCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAA
** *
13318 CATT-AGAGAGATAAGATCCTTTAGTTTCTTTCGCTCCACTGTAATCTCAGGCAAATAGGATTAC
195 C-TTCAGAGAGATAAGATCCTTTAGTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTAC
*
13382 TGGC-
259 TAGCA
* * *
13386 TTAAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAAT
1 TT-AATCTGCTCCGCTATAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
*** * * *
13451 CTTTTGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTATTGTTCAGGAAGACAAGATCTGGA
65 CTCAGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTGTTCAGGAAGACAAGATCTGGA
* * *
13516 ACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAA
130 ACTCTTCAGCCTATTCCACAGTAATATCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAA
* * * **
13581 CTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACT
195 CTTCAGAGAGATAAGATCCTTTAGTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACT
13646 AGCA
260 AGCA
* *
13650 TTAATCTGCTCTGTTATAATCTCAGGGAGAT
1 TTAATCTGCTCCGCTATAATCTCAGGGAGAT
13681 CAGATTCACC
Statistics
Matches: 252, Mismatches: 39, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
262 6 0.02
263 244 0.97
264 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (263 bp):
TTAATCTGCTCCGCTATAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC
TCAGGGAGAGAAGATTCACAATCTTCGATCTGCTCCACTATTGTTCAGGAAGACAAGATCTGGAA
CTCTTCAGCCTATTCCACAGTAATATCAGGGAAATAAGACCTGATGCGATCTACTCTACTATAAC
TTCAGAGAGATAAGATCCTTTAGTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTA
GCA
Found at i:13462 original size:44 final size:44
Alignment explanation
Indices: 13350--13452 Score: 170
Period size: 44 Copynumber: 2.3 Consensus size: 44
13340 AGTTTCTTTC
* * *
13350 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTAAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTAAATTT
*
13394 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTAAATTT
13438 GCTCCGCTGTAATCT
1 GCTCCGCTGTAATCT
13453 TTTGGAGATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTAAATTT
Found at i:13466 original size:219 final size:217
Alignment explanation
Indices: 12701--13423 Score: 1007
Period size: 219 Copynumber: 3.3 Consensus size: 217
12691 TTGCTCCGCC
* * ***
12701 GTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGAT
1 GTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
* * * * * *
12766 TCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTC
66 TCACCATCTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTC
* * *
12831 CACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATA
131 CACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGA
*
12896 TCCTTTATTTTAATCCGTTCCACT
196 TCCTTTATTTT--TTCGTTCCACT
* *
12920 GTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGAT
1 GTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
* *
12985 TCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTC
66 TCACCATCTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTC
* * * * *
13050 CACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAATTTCAGAGAGATAAGA
131 CACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGA
* *
13115 TCCATTATTTTAATCTGTTCCACT
196 TCCTTTATTTT-TTC-GTTCCACT
* * *
13139 ATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGAT
1 GTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
* * * * *
13204 TCACAATTTTCGTTTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTC
66 TCACCATCTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTC
* *
13269 CACTGTAATATCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACATT-AGAGAGATAAG
131 CACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAAC-TTCAGAGAGATAAG
*
13333 ATCCTTTAGTTTCTTTCGCTCCACT
195 ATCCTTTA-TTT-TTTCGTTCCACT
* * * *
13358 GTAATCTCAGGCAAATAGGATTACTGGCTTAAATTTGCTCCGCTGTAATCTCAGGGAGATAGGAT
1 GTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
13423 T
66 T
13424 ACTGGCTTCA
Statistics
Matches: 447, Mismatches: 53, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
218 2 0.00
219 437 0.98
220 7 0.02
221 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (217 bp):
GTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
TCACCATCTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTC
CACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGA
TCCTTTATTTTTTCGTTCCACT
Found at i:13933 original size:44 final size:44
Alignment explanation
Indices: 13824--13949 Score: 153
Period size: 44 Copynumber: 2.9 Consensus size: 44
13814 GATCCTTTAT
* * * * *
13824 TTTAATCCGCTCCACTGTAATATCAGGCAAATAGGATTACTGGC
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
* *
13868 TTCAATTTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
* ** *
13912 TTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAGATT
1 TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATT
13950 CACCGTCTTC
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 69 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
Found at i:13944 original size:701 final size:700
Alignment explanation
Indices: 9409--16929 Score: 5420
Period size: 701 Copynumber: 10.7 Consensus size: 700
9399 TTCAATTTGC
* * * ***
9409 TCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGA
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * * * * * * *
9474 TAAGATTCACCGTCTTCGATCT-GCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGG
66 TAAGATTCACCATTTTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCAG
* * *
9538 TCTATTCCACAGTAATCTCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
130 TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGA
* * * * * * * *
9603 GATAATATCATTTATTTTAATCCGTTCAACTGTAATCTCAGAGTAATAGGATTACTAGCATT-AA
195 GATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAA
* * * * * * * * *
9667 TCTGCTCTGTTATAATATCAGGGAGATCAGATTCACGATTTTTTATTAGCTCCACTATTGCTTAG
259 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGTTTTAATT-GCTCCACTAATGCTTAG
* * * * *
9732 GGAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCG
323 GGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCG
* * * * *
9797 ATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTC-ATCTGCTCCACTATAATATT
388 ATCTACTCTACTATAAC-TTAGAGAGATAAGATCCTTTAGTTTCGATCTGCTCCACTGTAATCTC
* * * * * * *
9861 AGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCAGGGAGATAGGTTTACTGGGT
452 AGGCAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCT
* * * * *** * * *
9926 TTAATCTGCTCCGCTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATCTGCTCCGCTGTAAT
517 TCAATTTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATCTTCGATCTGCTCCAC--TATT
* * * * * ** * * *
9990 CTT-ATGGAGATAAGAT-T-CACCGTCTTCGATCTGCTCCAC--TATTGCTCAGGGAGACAAGAT
580 GTTCAGGGAGATAAGATCTGGAAC-TCTTCGGTCTATTCCACAGTAAT-CTCAGGGAGATAAGAC
* * * * * * * * *** ***
10050 CTGGAACTATTCGGTCTATTCCACTGTAA-TCTGAGGGAGATAAGA-CC-TGA-TGCGATCTAC
643 CT-G----ATGCGATCTACTCTACTGTAACT-TCAGAGAGATAATATCCTTTATTTTAATCCGT
* * ** * * *** * * * *
10110 TCTACTGTAA-CTTCAGAGAGGTAAGA-TCCTTTATTTTAAT-TCGCTCCACCGTAATCTTAGGG
1 TCCACTGTAATC-TCAGGGAAATAGGATTAC-TGGCTTCAATCT-GCTCCGCTGTAATCTCAGGG
* * ** * * * * * *
10172 AGATAGGATT-ACTAGCTTCAATCAGCTCCGCT-GTGATCTCAGGGAGATAAGATCTGAAATTCT
63 AGATAAGATTCACCATTTTCGATTAGCTCCACTATTG--CTTAGGGAGATAAGATCTGGAATTCT
* * *
10235 TCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAA
126 TCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTA
* * *
10300 GAGAGATAAGATCCTTTATTCTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTT
191 GAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTT
* * *
10365 CAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCAC-CGTTTTCGATTAGCTCCACTATTGC
256 CAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGTTTT-AATT-GCTCCACTAATGC
* * * * *
10429 TTAGGGAGATAAGATCTGGAATTT-TTCGGTCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTG
319 TTAGGGAGATAAGATCTGG-ATTTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTG
* * * ** * *
10493 ATGCAATCTACTCTACTGTAAATTCAGAGAGATAAGATCCTTTA-TTTTAATCTGTTCCACTATA
383 ATGCGATCTACTCTACTATAACTT-AGAGAGATAAGATCCTTTAGTTTCGATCTGCTCCACTGTA
* * * * *
10557 ATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCA
447 ATCTCAGGCAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAGGATT-A
**** ** * * * ** **
10622 CAATTTTTGATTTGCTCCAC--TATTGCTTAGGGAGATAAGATCTGGA-TTTCTTC-AGTCTATT
511 CTGGCTTCAATTTGCTCCGCTGTAAT-CTTAGGGAGATAAGAT-T-CACCATCTTCGA-TCTGCT
* * ** * * * * * * *
10683 CCATTGTAATCTCAGGGAGATAAGACCT-G-A---TGCGATCTACTCTACTA-TAA-CTTTAGAG
572 CCACTATTGT-TCAGGGAGATAAGATCTGGAACTCTTCGGTCTATTCCAC-AGTAATC-TCAGGG
* * * ** * * * ***
10741 AGATAAGATCATTTATTTTC-ATCCGCTCCACTGTAA-TCTCAG-GCAAATAGGAT-TAC-TGGC
634 AGATAAGA-C-CTGA--TGCGATCTACTCTACTGTAACT-TCAGAG-AGATA--ATATCCTTTAT
* ** *
10801 TTCAATTTGC
691 TTTAATCCGT
* * * ***
10811 TCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGA
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * * * * *
10876 TAAGATTCACCATCTTCGATCT-GCTCCCCTATTG-TTCAGGAAGACAAGATCTGGAACTCTTCG
66 TAAGATTCACCATTTTCGAT-TAGCTCCACTATTGCTT-AGGGAGATAAGATCTGGAATTCTTCA
* * * *
10939 GCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
129 GTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAG
* * * * *
11004 AGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-A
194 AGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCA
* * * * * * * *
11068 ATCTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTA
258 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGTTTTAATT-GCTCCACTAATGCTTA
* * * * *
11133 GGGAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGC
322 GGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
* ** * *
11198 GATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTA-TTTTAATCCGCTCCACTGTAATAT
387 GATCTACTCTACTATAAC-TTAGAGAGATAAGATCCTTTAGTTTCGATCTGCTCCACTGTAATCT
* *
11262 CAGGCAAATAGGATTACTGGCTTCAATTTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGC
451 CAGGCAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGC
* * ** * *
11327 TTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAGATTCACCGTCTTCGATCTGCTCCATTATTG
516 TTCAATTTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTG
* * * *
11392 CTCAGGAAGACAAGATCTGGAACTCTTCGGTCTATTCCACAGTAATCTCATGGAGATAAGACCTG
581 TTCAGGGAGATAAGATCTGGAACTCTTCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTG
*
11457 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCATTTATTTTAATCCGT
646 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGT
* * * * * *
11512 TCAACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGGAG
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTGTAATCTCAGGGAG
* ** * *
11576 ATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTCAG
65 ATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCAG
* * * *
11641 TGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGA
130 TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGA
* * * * *
11706 GATAAGATCCTTTATTTTCATCTGCTCCACTATAATATTAGGGAAATAGGATTACTTGCTTCAAT
195 GATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAAT
* * * * * * * *
11771 TTTCTCCGCTGTAATCTCAGGGAGAT-AGGTTTACTGGGTTTAATCTGCTCCGCTGTAAT-CTCA
260 CTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGTTTTAAT-TGCTCCAC--TAATGCTTA
* * ** * * * *
11834 GGGAGATAGGATTACTGG----CTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCACC
322 GGGAGATAAGA-T-CTGGATTTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGA--C-CT
* * * * ** * * ** * * **
11895 GTCTTCGATCTGCTCCACTATTGCTCA-AGGAGACAAGAT-CTGGAACTATTCGGTCTATTCCAC
382 G-ATGCGATCTACTCTACTATAACTTAGA-GAGATAAGATCCT-TTAGT-TTCGATCTGCTCCAC
* * * * * * * * * * * * *
11958 TGTAATCTGAGGGAGATAAGA--CCT-GATGCGATCTACTCTACTGTAA-CTTCAGAGAGGTAAG
443 TGTAATCTCAGGCAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATC-TCAGGGAGATAGG
* *** * * * * * * * * *
12019 A-TCCTTTATTTTAATTCGCTCCACCGTAATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGC
507 ATTAC-TGGCTTCAATTTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATCTTCGATCTGC
* * * *
12082 TCCGCT-GTGATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTA-TAATCTCAGG
571 TCCACTATTG-T-TCAGGGAGATAAGATCTGGAACTCTTCGGTCTATTCCAC-AGTAATCTCAGG
* * *
12145 GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATC
633 GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATC
12210 CGT
698 CGT
*
12213 TCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
*
12278 TAAGATTCACCGTTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTC-GA
66 TAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCAG-
* * * * * * *
12342 TCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGA
130 TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGA
* * *
12407 GATAAGATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAAT
195 GATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAAT
* * * * *
12472 CTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTTGATTTGCTCCACTATTGCTTAGG
260 CTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGTTTT-AATTGCTCCACTAATGCTTAGG
*
12537 GAGATAAGATCTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGA
324 GAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGA
* * *
12602 TCTACTCTACTATAACTTTAGAGAGATAAGATCATTTATTTTC-ATCCGCTCCACTGTAATCTCA
389 TCTACTCTACTATAAC-TTAGAGAGATAAGATCCTTTAGTTTCGATCTGCTCCACTGTAATCTCA
* * *
12666 GGCAAATAGGATTACTGGCTTCAATTTGCTCCGCCGTAATCTCAGGGAGATAGGATTACTGGCTT
453 GGCAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTT
** *
12731 CAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCT
518 CAATTTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGTT
* * * *
12796 CAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGAT
583 CAGGGAGATAAGATCTGGAACTCTTCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTGAT
12861 GCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGT
648 GCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGT
* *
12914 TCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
*
12979 TAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGT
66 TAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCAGT
* * * *
13044 CTATTCCACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAA-TTTCAGAGA
131 CTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTT-AGAGA
* * * *
13108 GATAAGATCCATTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAAT
195 GATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAAT
* * ** *
13173 CTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCAC-AATTTTCGTTTTGCTCCACTATTGCTTAG
260 CTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGTTTT--AATTGCTCCACTAATGCTTAG
*
13237 GGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCG
323 GGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCG
**
13302 ATCTACTCTACTATAACATTAGAGAGATAAGATCCTTTAGTTTCTTTC-GCTCCACTGTAATCTC
388 ATCTACTCTACTATAAC-TTAGAGAGATAAGATCCTTTAGTTTCGATCTGCTCCACTGTAATCTC
* * *
13366 AGGCAAATAGGATTACTGGCTTAAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCT
452 AGGCAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCT
** *
13431 TCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTATTGT
517 TCAATTTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGT
* * * *
13496 TCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGA
582 TCAGGGAGATAAGATCTGGAACTCTTCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTGA
13561 TGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGT
647 TGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGT
* * * * *
13615 TCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGGAG
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTGTAATCTCAGGGAG
* ** * *
13679 ATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTCAG
65 ATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCAG
* * * *
13744 TGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGA
130 TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGA
* * *
13809 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAATAGGATTACTGGCTTCAAT
195 GATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAAT
* * * * * * * *
13874 TTGCTCCACTGTAATCTTAGGGAGATAGGATT-ACTGGCTTTAATCTGCTCCGCTGTAAT-CTTT
260 CTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGTTTTAAT-TGCTCCAC--TAATGCTTA
* * ** ** * * * *
13937 TGGAGATAAGAT-T-CACCGTCTTC-GATCTGCTCCA-T-TATTGCTCAGGAAGACAAGATCTGG
322 GGGAGATAAGATCTGGA-TTTCTTCAG-TCTATTCCACTGTAAT-CTCAGGGAGATAAGACCT-G
* * * * * * * * * *
13997 AACTCTTCGGTCTATTCCAC-AGTAATCTCATAGAGATAAGA-CC--T-GATGCGATCTACTCTA
383 -A---TGCGATCTACTCTACTA-TAA-CTTAGAGAGATAAGATCCTTTAGTTTCGATCTGCTCCA
* ** * * *** * * * *
14057 CTGTAA-CTTCAGAG-AGATAATATCATTTATTTTAATCCGTTCAACTGTAATCTCAGGGTA-AT
442 CTGTAATC-TCAG-GCAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGG-AGAT
* * * * * * * * **
14119 AGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTAT-
504 AGGATTACTGGC-TTCAATTTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATCTTCGATC
** * * * * * *
14182 TAGCTCCACTATTGCTT-AGGGAGATAAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCA
568 T-GCTCCACTATTG-TTCAGGGAGATAAGATCTGGAACTCTTCGGTCTATTCCACAGTAATCTCA
* * * *
14246 TGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCA
631 GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAA
* *
14311 TCTGC
696 TCCGT
* * * * * *
14316 TCCACTATAATATTAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * *** * * * * *
14381 T-AGGTTTACTGGGTTT-AATCT-GCTCCGCTGTAAT-CTCAGGGAGATAGGATTACTGG----C
66 TAAGATTCAC-CATTTTCGAT-TAGCTCCAC--TATTGCTTAGGGAGATAAGA-T-CTGGAATTC
* ** * * * * * * * * * **
14438 TTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTG
125 TTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGA--C-CTG-ATGCGATCTACTCTACTGTAA
* * * ** *** ** * * *
14503 C-TCAGGGAGACAAGAT-CTGGAACTATTCGGTCTATTCCACTGTAATCTGAGGGAGATAAGA--
186 CTTTAGAGAGATAAGATCCT-TTA-T-TTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATT
* * * * * ** * * * **
14564 CCT-GATGCGATCTACTCTACTGTAA-CTTCAGAGAGGTAAGATCCTTTA-TTTTAATTCGCTCC
248 ACTGGCTTCAATCTGCTCCGCTGTAATC-TCAGGGAGATAAGATTCACTAGTTTTAATT-GCTCC
* ** * * * *
14626 ACCGTAAT-CTTAGGGAGATAGGAT-T--ACTAGCTTCAATC-AGCTCCGCTGTGATCTCAGGGA
311 A-C-TAATGCTTAGGGAGATAAGATCTGGA-TTTCTTCAGTCTA-TTCCACTGTAATCTCAGGGA
* * * * * * * * *
14686 GATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGA-CC--T-GATGC
372 GATAAGACCTG--A---TGCGATCTACTCTACTATAA-CTTAGAGAGATAAGATCCTTTAGTTTC
* * * * * * * *** * *
14747 GATCTACTCTACTATAA-CTTAAGAG-AGATAAGA-TCCTTTATTCTAATCCGTTCCACTGTAAT
431 GATCTGCTCCACTGTAATC-TCAG-GCAAATAGGATTACTGGCTTC-AATCTGCTCCACTGTAAT
* * * * *
14809 CTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCACGGAGATAAGATTCACC
493 CTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACC
* * * *
14874 GTTTTCGAT-TAGCTCCACTATTGCTT-AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCAG
558 ATCTTCGATCT-GCTCCACTATTG-TTCAGGGAGATAAGATCTGGAACTCTTCGGTCTATTCCAC
* * * * * * *
14937 TGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAAGATCC
621 AGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCC
*
15002 TTTATTTTAATCTGT
686 TTTATTTTAATCCGT
* *
15017 TCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * * *
15082 GAAGATTCACAATTTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGT
66 TAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCAGT
* *
15147 CTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTTAGAGAG
131 CTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAG
* * * * *
15212 ATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATT
196 ATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATC
* * * * ** **
15277 TGCTCCGCTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATTTGCTCTGCTGTAAT-CTTTT
261 TGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGTTTTAA-TTGCTC--CACTAATGCTTAG
* ** ** * * * *
15340 GGAGATAAGAT-T-CACCATCTTC-GATCTGCTCCAC--TATTGCTCAGGAAGACAAGATCTGGA
323 GGAGATAAGATCTGGA-TTTCTTCAG-TCTATTCCACTGTAAT-CTCAGGGAGATAAGACCT-G-
* ** * * * * * * * * *
15400 ACTCTTCGGCCTATTCCAC-AGTAATCTCAGGGAAATAAGA-CC--T-GATGCGATCTACTCTAC
383 A---TGCGATCTACTCTACTA-TAA-CTTAGAGAGATAAGATCCTTTAGTTTCGATCTGCTCCAC
* * *** * * *
15460 TGTAA-CTTCAGAG-AGATA--ATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTA-A
443 TGTAATC-TCAG-GCAAATAGGAT-TAC-TGGCTTCAATCTGCTCCACTGTAATCTCAGGG-AGA
* * * * * * * * * * **
15520 TAGGATTACTAGCATT-AATATGCTCTGTTATAATGTCAGGGAGATCATATTCACCATTTTTTTA
503 TAGGATTACTGGC-TTCAATTTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCA-TCTTCGA
* * ** * * * * *
15584 T-TAGTTCCACTATTACTT-AGGGAGATAAGATCTGGATTTATTCAGTTTATTCCGCTGTAATCT
566 TCT-GCTCCACTATT-GTTCAGGGAGATAAGATCTGGAACTCTTCGGTCTATTCCACAGTAATCT
* * * *
15647 CATGGAGATAAGACTTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTT
629 CAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTT
* * *
15712 CATCTGC
694 AATCCGT
* * * * *
15719 TCCACTATAATATCAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* **** * * * * *
15784 TAGGATT-ACTGGGTTCAATCT-GCTCCGCTGTAAT-CTCAGGGAGATAGGATTACTGG----CT
66 TAAGATTCACCATTTTCGAT-TAGCTCCAC--TATTGCTTAGGGAGATAAGA-T-CTGGAATTCT
* ** * * * * * * * * * **
15842 TCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGC
126 TCAGTCTATTCCACTGTAATCTCAGGGAGATAAGA--C-CTG-ATGCGATCTACTCTACTGTAAC
* * * ** *** ** * * *
15907 -TCAGGGAGAAAAGAT-CTGGAACTATTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGA--C
187 TTTAGAGAGATAAGATCCT-TTA-T-TTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTA
* * * * ** * * * **
15968 CT-GATGCGATCTACTCTACTGTAA-CTTCAGAGAGGTAAGATCCTTTA-TTTTAATTCGCTCCA
249 CTGGCTTCAATCTGCTCCGCTGTAATC-TCAGGGAGATAAGATTCACTAGTTTTAATT-GCTCCA
* ** * * *
16030 CTGTAAT-CTTAGGGAGATAGGAT-T--ACTAGCTTCAATC-AGCTCCGCTGTAATCTCAGGGAG
312 C--TAATGCTTAGGGAGATAAGATCTGGA-TTTCTTCAGTCTA-TTCCACTGTAATCTCAGGGAG
* * * * * * * * *
16090 ATAAGATCTGAAATTCCTCGGTCTATTCCACTATAATCTCAGGGAGATAAGA-CC--T-GATGCG
373 ATAAGACCTG--A-T--GCGATCTACTCTACTATAA-CTTAGAGAGATAAGATCCTTTAGTTTCG
* * * * * *** * * *
16151 ATCTACTCTACTGTAA-CTTAAGAG-AGATAAGATT-CTTTATTTTAATCCGTTCCACTGTAATC
432 ATCTGCTCCACTGTAATC-TCAG-GCAAATAGGATTAC-TGGCTTCAATCTGCTCCACTGTAATC
* * * * * * *
16213 TTAGGAAAATAGGGTTACTGGCTTCAATTTGTTCCGCTGTAATCTCAAGGAGATAAGATTCACCA
494 TCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCA
* * * * * * *
16278 TTTTCGAT-TAGCTCAACTATTTCTTC-GGGAGATATGATATGGAATTCTTCGGTCTATTCCACT
559 TCTTCGATCT-GCTCCACTA-TTGTTCAGGGAGATAAGATCTGGAACTCTTCGGTCTATTCCACA
* * *
16341 GTAATCTCAAGCAGATAAGA-CTAGATGCAATCTACTCTACTGTAACTTCAGAGAGATAATATCC
622 GTAATCTCAGGGAGATAAGACCT-GATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCC
*
16405 TTTATTTTAATCTGT
686 TTTATTTTAATCCGT
* * **
16420 TCCACTGTAATCT-AGGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAATGAG
1 TCCACTGTAATCTCA-GGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
* * *
16484 ATAAGATTCACCAATTTCGATTAGCTCCACTATTGCTTATGGAGATAAGATCTGGAATTCTTCGG
65 ATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCAG
* * * * * *
16549 TGTATTCTACTATAATCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGC
130 TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGA
* * *
16614 GATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCATGGAAATAGGATTACTGGCTTCAAT
195 GATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAAT
* * * * *
16679 CTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCA-TTTTCGATTAGCTCCACTATTGCTTAG
260 CTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGTTTT-AATT-GCTCCACTAATGCTTAG
* * * *
16743 GGAGATAAGATCTGAAATTCTT-AGGTCTATTCCAGC-GTAATCTCTGGGAGGTAAGACCTGATG
323 GGAGATAAGATCTGGATTTCTTCA-GTCTATTCCA-CTGTAATCTCAGGGAGATAAGACCTGATG
* * * *
16806 CGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAGTTCAT--TCCACTATAAT
386 CGATCTACTCTACTATAACTT-AGAGAGATAAGATCCTTTAGTTTCGATC-TGCTCCACTGTAAT
* * * * ** * * *
16869 CTCAGGGAAATAGGATTGCTAGCTTCAATCTGCTTCGTTCTAATCTCAGAGAGATAAGATT
449 CTCAGGCAAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAGGATT
16930 CACCATTTTC
Statistics
Matches: 5531, Mismatches: 1040, Indels: 498
0.78 0.15 0.07
Matches are distributed among these distances:
697 4 0.00
698 128 0.02
699 182 0.03
700 309 0.06
701 3881 0.70
702 650 0.12
703 219 0.04
704 129 0.02
705 29 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (700 bp):
TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCAGT
CTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAG
ATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATC
TGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAGTTTTAATTGCTCCACTAATGCTTAGGGA
GATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATC
TACTCTACTATAACTTAGAGAGATAAGATCCTTTAGTTTCGATCTGCTCCACTGTAATCTCAGGC
AAATAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAA
TTTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGTTCAG
GGAGATAAGATCTGGAACTCTTCGGTCTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCG
ATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGT
Found at i:13948 original size:219 final size:216
Alignment explanation
Indices: 13394--13924 Score: 609
Period size: 219 Copynumber: 2.4 Consensus size: 216
13384 GCTTAAATTT
* * **
13394 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGA
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGA
** * * * * *
13459 GATAAGATTCACCATCTTCGATCTGCTCCCCTATTGTTCAGGAAGACAAGATCTGGAACTCTTCG
66 GAT-AGATTCACCATCTTTAATCTGCT-CCCTATTCTTAAGG-AGATAAGATCTGGAACTATTCA
*
13524 GCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
128 GCCTATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
*
13589 AGATAATATCCTTTATTTTAATCC
193 AGATAAGATCCTTTATTTTAATCC
* * * * * * * *
13613 GTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGCTCTGTTATAATCTCAGGG
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATTTGCTCCGCTGTAATCTTAGGG
* * * **
13677 AGATCAGATTCACCATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATT
65 AGAT-AGATTCACCATCTTTAATCT-GCTCC-CTATT-CTTAAGGAGATAAGATCTGGAACTATT
** * * * * *
13741 CAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAG
126 CAGCCTATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAG
13806 AGAGATAAGATCCTTTATTTTAATCC
191 AGAGATAAGATCCTTTATTTTAATCC
* * *
13832 GCTCCACTGTAATATCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCACTGTAATCTTAGGGA
1 GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGA
***
13897 GATAGGATT-ACTGGCTTTAATCTGCTCC
66 GATA-GATTCACCATCTTTAATCTGCTCC
13925 GCTGTAATCT
Statistics
Matches: 256, Mismatches: 49, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
218 18 0.07
219 232 0.91
220 6 0.02
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (216 bp):
GCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTAGGGA
GATAGATTCACCATCTTTAATCTGCTCCCTATTCTTAAGGAGATAAGATCTGGAACTATTCAGCC
TATTCCACAGTAATCGCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGA
TAAGATCCTTTATTTTAATCC
Found at i:14042 original size:263 final size:263
Alignment explanation
Indices: 13619--14689 Score: 931
Period size: 263 Copynumber: 4.1 Consensus size: 263
13609 ATCCGTTCCA
* * * * * *
13619 CTGTAATCTCAGGGTA-ATAGGATTACTAGCATTAATCTGCTCTGTTATAATCTCAGGGAGATCA
1 CTGTAATCTCAGGG-AGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAGGGAGATAA
* * ** * * ** * *
13683 GATTCACCATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTCAGTGT
65 GATTCACCGTCTTCGATCT-GCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCT
* * *
13747 ATTCCGCTGTAATCGCATG-GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGA
129 ATTCCACTGTAATCTCA-GAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGA
* * * *
13811 TAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAATAGGATTACTGGCTTCAATTT
193 TAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCT
*
13876 GCTCCA
258 GCTCCG
* * **
13882 CTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAGGGAGATAAG
* * *
13947 ATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGTCTAT
66 ATTCACCGTCTTCGATCTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTAT
* *
14012 TCCACAGTAATCTCATAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
131 TCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
* * * * *
14077 TATCATTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTGC
196 GATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGC-TTCAATCTGC
*
14141 TCTG
260 TCCG
* * * ** * * *
14145 TTATAATCTCAGGGAGATCA-GATTCACCATTTTTTAT-TAGCTCCAC--TATTGCTTAGGGAGA
1 CTGTAATCTCAGGGAGAT-AGGATT-ACTAGCTTTAATCT-GCTCCGCTGTAAT-CTTAGGGAGA
* ** * * ** * * * * * *
14206 TAAGATCTGGA-TTTATTC-AGTGTATTCCGCTGTAAT-CGCATGGAGATAAGACCT-G----AT
62 TAAGAT-T-CACCGTCTTCGA-TCTGCTCCAC--TATTGCTCAGGGAGACAAGATCTGGAACTAT
* * * * * * * * * *
14263 GCGATCTACTCTACTGTAA-CTTTAGAGAGATAAGATCCTTTATTTTC-ATCTGCTCCACTATAA
122 TCGGTCTATTCCACTGTAATC-TCAGAGAGATAAGA-CC-TGA--TGCGATCTACTCTACTGTAA
* * * * * ** * *** * * *
14326 -TATTAGGGAAATAGGATTAC-TTGCTTCAATTTTCTCCGCTGTAATCTCAGGGAGATAGGTTTA
182 CT-TCAGAGAGATAAGA-TCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTA
* * *
14389 CTGGGTTTAATCTGCTCCG
245 CTAGCTTCAATCTGCTCCG
* * *
14408 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAGGGAGATAAG
14473 ATTCACCGTCTTCGATCTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTAT
66 ATTCACCGTCTTCGATCTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTAT
* * *
14538 TCCACTGTAATCTGAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAA
131 TCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
* * * * *
14603 GATCCTTTATTTTAATTCGCTCCACCGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCAGCT
196 GATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCT
14668 CCG
261 CCG
*
14671 CTGTGATCTCAGGGAGATA
1 CTGTAATCTCAGGGAGATA
14690 AGATCTGAAA
Statistics
Matches: 615, Mismatches: 156, Indels: 74
0.73 0.18 0.09
Matches are distributed among these distances:
259 1 0.00
260 30 0.05
261 17 0.03
262 38 0.06
263 443 0.72
264 37 0.06
265 16 0.03
266 32 0.05
267 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (263 bp):
CTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAGGGAGATAAG
ATTCACCGTCTTCGATCTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTAT
TCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
GATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCT
CCG
Found at i:14216 original size:219 final size:217
Alignment explanation
Indices: 13876--14382 Score: 593
Period size: 219 Copynumber: 2.3 Consensus size: 217
13866 GCTTCAATTT
* * ***
13876 GCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGA
1 GCTCAACTGTAATCTTAGGGA-ATAGGATTACTAGC-TTAATCTGCTCCGCTGTAATCTCAGGGA
* * * *
13941 GATAAGATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCG
64 GATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTCA
*
14006 GTCTATTCCACAGTAATCTCATAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
129 GTCTATTCCACAGTAATCGCATAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
*
14071 AGATAATATCATTTATTTTAATCC
194 AGATAAGATCATTTATTTTAATCC
* * * * *
14095 GTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCTCTGTTATAATCTCAGGGA
1 GCTCAACTGTAATCTTAGGG-AATAGGATTACTAGC-TTAATCTGCTCCGCTGTAATCTCAGGGA
* * ** * * * **
14160 GATCAGATTCACCATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTATTC
64 GATAAGATTCACCATCTTCGATCT-GCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTC
* * * * *
14224 AGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGA
128 AGTCTATTCCACAGTAATCGCATAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
* * *
14289 GAGATAAGATCCTTTATTTTCATCT
193 GAGATAAGATCATTTATTTTAATCC
* * * * * *
14314 GCTCCACTATAATATTAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCAGGGA
1 GCTCAACTGTAATCTTAGGG-AATAGGATTACTAGCTT-AATCTGCTCCGCTGTAATCTCAGGGA
14379 GATA
64 GATA
14383 GGTTTACTGG
Statistics
Matches: 238, Mismatches: 47, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
218 3 0.01
219 234 0.98
220 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (217 bp):
GCTCAACTGTAATCTTAGGGAATAGGATTACTAGCTTAATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTCAGT
CTATTCCACAGTAATCGCATAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
ATAAGATCATTTATTTTAATCC
Found at i:14407 original size:44 final size:44
Alignment explanation
Indices: 14310--14495 Score: 210
Period size: 44 Copynumber: 4.2 Consensus size: 44
14300 CTTTATTTTC
* * * * * *
14310 ATCTGCTCCACTATAATATTAGGGAAATAGGATTACTTGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
* * * * *
14354 ATTTTCTCCGCTGTAATCTCAGGGAGATAGGTTTACTGGGTTTA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
14398 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
* * * * * *
14442 ATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGTCTTCG
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCA
14487 ATCTGCTCC
1 ATCTGCTCC
14496 ACTATTGCTC
Statistics
Matches: 119, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 103 0.87
45 16 0.13
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.34
Consensus pattern (44 bp):
ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
Found at i:14430 original size:88 final size:88
Alignment explanation
Indices: 14310--14470 Score: 232
Period size: 88 Copynumber: 1.8 Consensus size: 88
14300 CTTTATTTTC
* * * *
14310 ATCTGCTCCACTATAATATTAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCA
1 ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCA
14375 GGGAGATAGGTTTACTGGGTTTA
66 GGGAGATAGGTTTACTGGGTTTA
* * * * *
14398 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTA
1 ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCA
*
14463 TGGAGATA
66 GGGAGATA
14471 AGATTCACCG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 63 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (88 bp):
ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCA
GGGAGATAGGTTTACTGGGTTTA
Found at i:14588 original size:482 final size:479
Alignment explanation
Indices: 12918--14869 Score: 2193
Period size: 482 Copynumber: 4.1 Consensus size: 479
12908 ATCCGTTCCA
* * * * ***
12918 CTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* * * * *
12983 ATTCACCATTTTCGAT-TAGCTCCAC-TATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCT
66 ATTCACCGTCTTCGATCT-GCTCC-CTTATT-CTTAGGAAGACAAGATCTGGAACTCTTCGGTCT
* * * *
13046 ATTCCAC-TGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAATTTCAGAGAGA
128 ATTCCACAT--AATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGA
* * * * * * *
13110 TAAGATCCATTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGC-TTCAATC
191 TAATATCC-TTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATC
* ** *
13174 TGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATTTTCGTT-TT-GCTCCACTATTGCTTAG
254 TGCTCCGCTATAATCTCAGGGAGATCAGATTCACCATTTT--TTATTAGCTCCACTATTGCTTAG
* **
13237 GGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATATCAGGGAGATAAGACCTGATGCG
317 GGAGATAAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCG
* * ** * *
13302 ATCTACTCTACTATAACATTAGAGAGATAAGATCCTTTAGTTTCTTTCGCTCCACTGTAATCTCA
382 ATCTACTCTACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCA
*
13367 GGCAAATAGGATTACTGGCTTAAATTTGCTCCG
447 GGCAAATAGGATTACTGGCTTCAATTTGCTCCG
* *
13400 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* * * *
13465 ATTCACCATCTTCGATCTGCTCCCCTATTGTTCAGGAAGACAAGATCTGGAACTCTTCGGCCTAT
66 ATTCACCGTCTTCGATCTGCTCCCTTATTCTT-AGGAAGACAAGATCTGGAACTCTTCGGTCTAT
*
13530 TCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
130 TCCACA-TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
*
13595 TATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCT
194 TATCC-TTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCT
* *
13660 CTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
258 CCGCTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
* * *
13725 AAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTAC
323 AAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCGATCTAC
*
13790 TCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAA
388 TCTACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAA
*
13855 TAGGATTACTGGCTTCAATTTGCTCCA
453 TAGGATTACTGGCTTCAATTTGCTCCG
*
13882 CTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* *
13947 ATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGTCTAT
66 ATTCACCGTCTTCGATCTGCTCCCTTATT-CTTAGGAAGACAAGATCTGGAACTCTTCGGTCTAT
**
14012 TCCACAGTAATCTCATAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
130 TCCACA-TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
*
14077 TATCATTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCT
194 TATC-CTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCT
* *
14142 CTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
258 CCGCTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGAT
* * *
14207 AAGATCTGGATTTATTCAGTGTATTCCGCTGTAATCGCATGGAGATAAGACCTGATGCGATCTAC
323 AAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCGATCTAC
* * * * * *
14272 TCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTATAATATTAGGGAAA
388 TCTACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAA
* *
14337 TAGGATTACTTGCTTCAATTTTCTCCG
453 TAGGATTACTGGCTTCAATTTGCTCCG
* * *** *
14364 CTGTAATCTCAGGGAGATAGGTTTACTGGGTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAGG
1 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
* * * * * * * *
14429 ATT-ACTGGCTTCAATCTGCTCCGCTGTAATCTTATGG-AGATAAGAT-T-CACCGTCTTCGATC
66 ATTCACCGTCTTCGATCTGCTCC-CT-TATTCTTA-GGAAGACAAGATCTGGAAC-TCTTCGGTC
** * * * * * * * *
14490 TGCTCCAC-TATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAA-TCTGA
127 TATTCCACATAAT-CTCAGGGAGATAAGACCT-G----ATGCGATCTACTCTACTGTAACT-TCA
* * * *** *** * * * * *
14553 GGGAGATAAGA-CCTGA-TGCGATCTACTCTACTGTAA-CTTCAGAG-AGGTAAGATCCT-TTA-
185 GAGAGATAATATCCTTATTTTAATCCGTTCAACTGTAATC-TCAGGGTA-ATAGGAT--TACTAG
** * ** * * ** ** * *
14612 TTTTAAT-TCGCTCCACCGTAATCTTAGGGAGAT-AGGATT-ACTAGCTTCAATCAGCTCCGCT-
246 CATTAATCT-GCTCCGCTATAATCTCAGGGAGATCA-GATTCACCATTTTTTATTAGCTCCACTA
* * * * * * * *
14673 GTGATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAG
309 TTG--CTTAGGGAGATAAGATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAG
* * *
14738 ACCTGATGCGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCAC
372 ACCTGATGCGATCTACTCTACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCAC
* * * *
14803 TGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCG
437 TGTAATATCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCG
* *
14846 CTGTAATCTCACGGAGATAAGATT
1 CTGTAATCTCAGGGAGATAGGATT
14870 CACCGTTTTC
Statistics
Matches: 1287, Mismatches: 154, Indels: 58
0.86 0.10 0.04
Matches are distributed among these distances:
479 3 0.00
480 20 0.02
481 56 0.04
482 1163 0.90
483 13 0.01
484 4 0.00
485 28 0.02
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (479 bp):
CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTTTTGGAGATAAG
ATTCACCGTCTTCGATCTGCTCCCTTATTCTTAGGAAGACAAGATCTGGAACTCTTCGGTCTATT
CCACATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATA
TCCTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATTAATCTGCTCCG
CTATAATCTCAGGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGATAAG
ATCTGGATTTATTCAGTCTATTCCACTGTAATCGCAGGGAGATAAGACCTGATGCGATCTACTCT
ACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATATCAGGCAAATAG
GATTACTGGCTTCAATTTGCTCCG
Found at i:14695 original size:175 final size:175
Alignment explanation
Indices: 14503--14868 Score: 552
Period size: 175 Copynumber: 2.1 Consensus size: 175
14493 TCCACTATTG
* * * *
14503 CTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCACTGTAATCTGAGGGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
* * * * *
14568 ATGCGATCTACTCTACTGTAACTTCAGAGAGGTAAGATCCTTTATTTTAATTCGCTCCACCGTAA
66 ATGCGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACCGTAA
* * *
14633 TCTTAGGGAGATAGGATTACTAGCTTCAATCAGCTCCGCTGTGAT
131 TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
* *
14678 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
* *
14743 ATGCGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAA
66 ATGCGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACCGTAA
* * *
14808 TCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAAT
131 TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
*
14853 CTCACGGAGATAAGAT
1 CTCAGGGAGATAAGAT
14869 TCACCGTTTT
Statistics
Matches: 171, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
175 171 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (175 bp):
CTCAGGGAGATAAGATCTGAAACTATTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
ATGCGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGCTCCACCGTAA
TCTCAGGGAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
Found at i:14807 original size:219 final size:218
Alignment explanation
Indices: 14681--15307 Score: 966
Period size: 219 Copynumber: 2.9 Consensus size: 218
14671 CTGTGATCTC
* *
14681 AGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
*
14746 CGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCT
66 CGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* * *
14811 CAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCACGGAGATAAGATTCACCGT
131 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACAG-
14876 TTTCGATTAGCTCCACTATTGCTT
195 TTTCGATTAGCTCCACTATTGCTT
* * * *
14900 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* * * * * *
14965 CAATCTACTCTACTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATCT
66 CGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* * *
15030 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAAT
131 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCAC-AG
*
15095 TTTCGATTTGCTCCACTATTGCTT
195 TTTCGATTAGCTCCACTATTGCTT
* * *
15119 AGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* * * *
15184 CGATCTACTCTACTATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCT
66 CGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* * *
15249 CAGGCAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATT
131 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
15308 ACTGGCTTCA
Statistics
Matches: 367, Mismatches: 40, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
219 367 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (218 bp):
AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
CAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACAGT
TTCGATTAGCTCCACTATTGCTT
Found at i:14813 original size:85 final size:85
Alignment explanation
Indices: 14537--14816 Score: 242
Period size: 85 Copynumber: 3.2 Consensus size: 85
14527 ATTCGGTCTA
* *
14537 TTCCACTGTAATCTGAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
* *
14602 AGATCCTTTATTTTAATTCG
66 AGATCCTTTATTCTAATCCG
* * * * * * * * ** * *
14622 CTCCACCGTAATCTTAGGGAGATAGGATTACTAGCTTCAATC-AGCTCCGCTGTGA-TCTCAGGG
1 TTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGCGATCTA-CTCTACTGTAACT-TCAGAG
** ** **
14685 AGATAAGAT-CTGAAATTCTTCGGTCTA
61 AGATAAGATCCT-TTATTC-T-AATCCG
* * *
14712 TTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTAAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
14777 AGATCCTTTATTCTAATCCG
66 AGATCCTTTATTCTAATCCG
14797 TTCCACTGTAATCTCAGGGA
1 TTCCACTGTAATCTCAGGGA
14817 AATAGGATTG
Statistics
Matches: 141, Mismatches: 43, Indels: 22
0.68 0.21 0.11
Matches are distributed among these distances:
85 44 0.31
86 1 0.01
87 36 0.26
88 36 0.26
89 1 0.01
90 23 0.16
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (85 bp):
TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCCTTTATTCTAATCCG
Found at i:15250 original size:394 final size:393
Alignment explanation
Indices: 14411--15130 Score: 937
Period size: 394 Copynumber: 1.8 Consensus size: 393
14401 TGCTCCGCTG
* * * * * * * *
14411 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATT
1 TAATCTCAGAGAAATAAGATTGCTAGCTTCAATCCGCTCCGCTGTAATCTCACGGAGATAAGATT
14476 CACCGTCTTCGATCTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCC
66 CACCGTCTTCGATCTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCC
* * * * *
14541 ACTGTAATCTGAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAAGAT
131 ACTGGAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAAGAT
* * *
14606 CCTTTATTTTAATTCGCTCCACCGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCAGCTCCG
196 CCTTTATTTTAATTCGCTCCACCATAATCTAAGGGAAATAGGATTACTAGCTTCAATCAGCTCCG
* * * * *
14671 CTGTGATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATA
261 CTGTAATCTCAGGGAGAGAAGATCTCAAATTCTTCGATCTACTCCACTAT-ATCTCAGGGAGATA
* * * * **
14736 AGACCTGATGCGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCC
325 AGACCTGATGCCATCTACTCCACTATAACTTAAGAGAGATAAGATCCTTGATGCTAATCCACTCC
*
14801 ACTG
390 ACTA
* * * *
14805 TAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCACGGAGATAAGATT
1 TAATCTCAGAGAAATAAGATTGCTAGCTTCAATCCGCTCCGCTGTAATCTCACGGAGATAAGATT
* * * * *
14870 CACCGTTTTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTC
66 CACCGTCTTCGATCT-GCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTC
* * *
14934 CAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAAGA
130 CACTGGAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAAGA
* * * *
14999 TCCTTTATTTTAA-TCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTC
195 TCCTTTATTTTAATTC-GCTCCACCATAATCTAAGGGAAATAGGATTACTAGCTTCAATCAGCTC
* * *
15063 CGCTGTAATCTCAGGGAGAGAAGAT-TCACAATT-TTCGATTTGCTCCACTAT-TGCTTAGGGAG
259 CGCTGTAATCTCAGGGAGAGAAGATCTCA-AATTCTTCGATCTACTCCACTATAT-CTCAGGGAG
15125 ATAAGA
322 ATAAGA
15131 TCTGGATTTC
Statistics
Matches: 290, Mismatches: 32, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
391 1 0.00
392 14 0.05
393 19 0.07
394 256 0.88
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (393 bp):
TAATCTCAGAGAAATAAGATTGCTAGCTTCAATCCGCTCCGCTGTAATCTCACGGAGATAAGATT
CACCGTCTTCGATCTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCC
ACTGGAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGATAAGAT
CCTTTATTTTAATTCGCTCCACCATAATCTAAGGGAAATAGGATTACTAGCTTCAATCAGCTCCG
CTGTAATCTCAGGGAGAGAAGATCTCAAATTCTTCGATCTACTCCACTATATCTCAGGGAGATAA
GACCTGATGCCATCTACTCCACTATAACTTAAGAGAGATAAGATCCTTGATGCTAATCCACTCCA
CTA
Found at i:15346 original size:44 final size:44
Alignment explanation
Indices: 15234--15336 Score: 170
Period size: 44 Copynumber: 2.3 Consensus size: 44
15224 ATTTTCATCC
* * *
15234 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
15278 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
*
15322 GCTCTGCTGTAATCT
1 GCTCCGCTGTAATCT
15337 TTTGGAGATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
Found at i:15350 original size:219 final size:219
Alignment explanation
Indices: 14629--15325 Score: 934
Period size: 219 Copynumber: 3.2 Consensus size: 219
14619 TCGCTCCACC
* * * * * *
14629 GTAATCTTAGGGAGATAGGATT-ACTAGCTTCAATCAGCTCCGCT-GTGATCTCAGGGAGATAAG
1 GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATG--CTTAGGGAGATAAG
* *
14692 ATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
64 ATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
*
14757 ACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCTCAGGGAAATAG
129 ACTATAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAG
*
14822 GATTGCTGGCTTCAATCTGCTCCGCT
194 GATTACTGGCTTCAATCTGCTCCGCT
* * * * *
14848 GTAATCTCACGGAGATAAGATTCAC-CGTTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGA
1 GTAATCTCAGGGAGATAAGATTCACTAG-CTTCAATTAGCTCCACTAATGCTTAGGGAGATAAGA
* * * * *
14912 TCTGGAATTCTTCGGTCTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTA
65 TCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTA
* * * * * *
14977 CTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTATAATCTAAGGGAAATAGG
130 CTATAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGG
15042 ATTACTGGCTTCAATCTGCTCCGCT
195 ATTACTGGCTTCAATCTGCTCCGCT
* * ** * * *
15067 GTAATCTCAGGGAGAGAAGATTCACAATTTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGAT
1 GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATGCTTAGGGAGATAAGAT
* * *
15132 CTGGATTTCTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
66 CTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
* * * * *
15197 TATAACTTTAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGA
131 TATAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGA
*
15262 TTACTGGCTTCAATTTGCTCCGCT
196 TTACTGGCTTCAATCTGCTCCGCT
* * *
15286 GTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATTTGCTC
1 GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTC
15326 TGCTGTAATC
Statistics
Matches: 419, Mismatches: 55, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
218 13 0.03
219 389 0.93
220 15 0.04
221 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (219 bp):
GTAATCTCAGGGAGATAAGATTCACTAGCTTCAATTAGCTCCACTAATGCTTAGGGAGATAAGAT
CTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
TATAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGA
TTACTGGCTTCAATCTGCTCCGCT
Found at i:15378 original size:263 final size:263
Alignment explanation
Indices: 15010--16092 Score: 1030
Period size: 263 Copynumber: 4.1 Consensus size: 263
15000 CCTTTATTTT
* * * * * *
15010 AATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTT
* * * * * **
15075 AGGGAGAGAAGATTCACAATTTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTT
66 AGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAAGATCTGGAACT
*
15140 CTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTT
131 CTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTT
* * * *
15205 TAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGC
196 CAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGC
15270 TTC
261 TTC
* * *
15273 AATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCTGCTGTAATCTT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTT
** * *
15338 TTGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACT
66 AGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAAGATCTGGAACT
* * * * *
15403 CTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTT
131 CTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTT
* * * *
15468 CAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGC
196 CAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGC
15533 ATT-
261 -TTC
* * * * * * ** ** * * * *
15536 AATATGCTCTGTTATAATGTCAGGGAGATCA-TATTCACCAT-TTTTTTAT-TAGTTCCACTATT
1 AATCTGCTCCGCTGTAATCTCAGGGAGAT-AGGATT-A-C-TGGCTTCAATCT-GCTCCGCTGTA
* ** * * ** * * *
15598 A-CTTAGGGAGATAAGATCTGGA-TTTATTC-AGTTTATTCCGCTGTAAT-CTCATGGAGATAAG
61 ATCTTAGGGAGATAAGAT-T-CACCATCTTCGA-TCTGCTCCAC--TATTGCTCAGGGAGATAAG
* * * * * * * *
15659 A-CTTG-A---TGC-GATCTACTCTACTGTAA-CTTTAGAGAGATAAGATCCTTTATTTTC-ATC
121 ATCTGGAACTCTTCAG-TCTATTCCACTGTAATC-TCAGGGAGATAAGA-CC-TGA--TGCGATC
* * * * * * * ** * *** *
15716 TGCTCCACTATAA-TATCAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCAGG
180 TACTCTACTATAACT-TCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGG
* * *
15780 GAGATAGGATTACTGGGTTC
244 GAAATAGGATTACTAGCTTC
15800 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTT
* * *
15865 ATGGAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTCAGGGAGAAAAGATCTGGAACT
66 AGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAAGATCTGGAACT
* * *
15930 ATTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
131 CTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTT
* * * * *
15995 CAGAGAGGTAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGC
196 CAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGC
16060 TTC
261 TTC
*
16063 AATCAGCTCCGCTGTAATCTCAGGGAGATA
1 AATCTGCTCCGCTGTAATCTCAGGGAGATA
16093 AGATCTGAAA
Statistics
Matches: 635, Mismatches: 150, Indels: 70
0.74 0.18 0.08
Matches are distributed among these distances:
260 5 0.01
261 39 0.06
262 31 0.05
263 373 0.59
264 111 0.17
265 30 0.05
266 41 0.06
267 5 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (263 bp):
AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTT
AGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAAGATCTGGAACT
CTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTT
CAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGC
TTC
Found at i:15781 original size:220 final size:219
Alignment explanation
Indices: 15277--15790 Score: 600
Period size: 220 Copynumber: 2.3 Consensus size: 219
15267 GGCTTCAATT
* * * ***
15277 TGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCTGCTGTAATCTTTTGG
1 TGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATTTGCTCTGCTGTAATCTCAGGG
* *
15342 AGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTC
66 AGATAAGATTCACCATCTTCGATCTGCTCCACTATTACTCAGGAAGACAAGATCTGGAACTATTC
*
15407 GGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
131 AGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
*
15472 GAGATAATATCCTTTATTTTAATC
196 GAGATAAGATCCTTTATTTTAATC
* * * * * * *
15496 CGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATATGCTCTGTTATAATGTCAGG
1 TGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGC-TTCAATTTGCTCTGCTGTAATCTCAGG
* * * ** * * * * **
15560 GAGATCATATTCACCATTTTTTTAT-TAGTTCCACTATTACTTAGGGAGATAAGATCTGGATTTA
65 GAGATAAGATTCACCA-TCTTCGATCT-GCTCCACTATTACTCAGGAAGACAAGATCTGGAACTA
** * * * * * *
15624 TTCAGTTTATTCCGCTGTAATCTCATGGAGATAAGACTTGATGCGATCTACTCTACTGTAACTTT
128 TTCAGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTC
*
15689 AGAGAGATAAGATCCTTTATTTTCATC
193 AGAGAGATAAGATCCTTTATTTTAATC
* * * * *
15716 TGCTCCACTATAATATCAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCAGGG
1 TGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATTTGCTCTGCTGTAATCTCAGGG
*
15781 AGATAGGATT
66 AGATAAGATT
15791 ACTGGGTTCA
Statistics
Matches: 239, Mismatches: 52, Indels: 7
0.80 0.17 0.02
Matches are distributed among these distances:
219 65 0.27
220 174 0.73
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (219 bp):
TGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATTTGCTCTGCTGTAATCTCAGGG
AGATAAGATTCACCATCTTCGATCTGCTCCACTATTACTCAGGAAGACAAGATCTGGAACTATTC
AGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
GAGATAAGATCCTTTATTTTAATC
Found at i:15801 original size:44 final size:44
Alignment explanation
Indices: 15713--15898 Score: 237
Period size: 44 Copynumber: 4.2 Consensus size: 44
15703 CTTTATTTTC
* * * * *
15713 ATCTGCTCCACTATAATATCAGGGAAATAGGATTACTTGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
* * *
15757 ATTTTCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGGTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
15801 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
* * * * * *
15845 ATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGTCTTCG
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCA
15890 ATCTGCTCC
1 ATCTGCTCC
15899 ACTATTGCTC
Statistics
Matches: 124, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
44 108 0.87
45 16 0.13
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (44 bp):
ATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
Found at i:16044 original size:85 final size:84
Alignment explanation
Indices: 15940--16213 Score: 255
Period size: 88 Copynumber: 3.2 Consensus size: 84
15930 ATTCGGTCTA
*
15940 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
16005 AGATCCTTTATTTTAATTCG
66 AGAT-CTTTATTTTAATTCG
* * * * * * * ** *
16025 CTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATC-AGCTCCGCTGTAA-TCTCAGGG
1 TTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGCGATCTA-CTCTACTGTAACT-TCAGAG
** * *** *
16088 AGATAAGATCTGAAATTCCTCGGTCTA
61 AGATAAGATCT-TTATT-TTAATTC-G
* *
16115 TTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
*
16180 AGATTCTTTATTTTAATCCG
66 AGA-TCTTTATTTTAATTCG
16200 TTCCACTGTAATCT
1 TTCCACTGTAATCT
16214 TAGGAAAATA
Statistics
Matches: 139, Mismatches: 39, Indels: 22
0.69 0.19 0.11
Matches are distributed among these distances:
85 37 0.27
86 2 0.01
87 36 0.26
88 38 0.27
89 3 0.02
90 23 0.17
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (84 bp):
TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCTTTATTTTAATTCG
Found at i:16087 original size:175 final size:175
Alignment explanation
Indices: 15906--16271 Score: 561
Period size: 175 Copynumber: 2.1 Consensus size: 175
15896 TCCACTATTG
* * * *
15906 CTCAGGGAGAAAAGATCTGGAACTATTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTGAAACTACTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
* * *
15971 ATGCGATCTACTCTACTGTAACTTCAGAGAGGTAAGATCCTTTATTTTAATTCGCTCCACTGTAA
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA
* *
16036 TCTTAGGGAGATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
131 TCTTAGGAAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
* *
16081 CTCAGGGAGATAAGATCTGAAATTCCTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
1 CTCAGGGAGATAAGATCTGAAACTACTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
* *
16146 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATTCTTTATTTTAATCCGTTCCACTGTAA
66 ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA
* * ** *
16211 TCTTAGGAAAATAGGGTTACTGGCTTCAATTTGTTCCGCTGTAAT
131 TCTTAGGAAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
*
16256 CTCAAGGAGATAAGAT
1 CTCAGGGAGATAAGAT
16272 TCACCATTTT
Statistics
Matches: 172, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
175 172 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (175 bp):
CTCAGGGAGATAAGATCTGAAACTACTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTG
ATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA
TCTTAGGAAAATAGGATTACTAGCTTCAATCAGCTCCGCTGTAAT
Found at i:16210 original size:219 final size:215
Alignment explanation
Indices: 16084--17147 Score: 1237
Period size: 219 Copynumber: 4.9 Consensus size: 215
16074 CTGTAATCTC
* * *
16084 AGGGAGATAAGATCTGAAATTCCTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* *
16149 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATTCTTTATTTTAATCCGTTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAAT-T
* * ** * * *
16214 TAGGAAAATAGGGT-TACTGGCTTCAATTTGTTCCGCTGTAATCTCAAGGAGATAAGATTCACCA
130 CAGG-AAATAGGATCT--TTACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCA
*
16278 TTTTCGATTAGCTCAACTATTTCTT
192 TTTTCGATTAGCTCCACTA-TTCTT
* * * * *
16303 CGGGAGATATGATATGGAATTCTTCGGTCTATTCCACTGTAATCTCAAGCAGATAAGA-CTAGAT
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCT-GAT
* * *
16367 GCAATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCTGTTCCACTGTAA-T
65 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATT
* * **
16431 CTAGGGGAAATAGGAT-TACTAGCTTCAATCTGCTCCGCTATAATCTCAATGAGATAAGATTCAC
130 C-A--GGAAATAGGATCT-TTA-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCAC
*
16495 CAATTTCGATTAGCTCCACTATTGCTT
190 CATTTTCGATTAGCTCCACTATT-CTT
* * * * *
16522 ATGGAGATAAGATCTGGAATTCTTCGGTGTATTCTACTATAATCTTAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
*
16587 CGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAAT-T
** * *
16652 CATGGAAATAGGAT-TACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCA
130 CA-GGAAATAGGATCT--TTACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCA
16716 TTTTCGATTAGCTCCACTATTGCTT
192 TTTTCGATTAGCTCCACTATT-CTT
* * * *
16741 AGGGAGATAAGATCTGAAATTCTTAGGTCTATTCCAGC-GTAATCTCTGGGAGGTAAGACCTGAT
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCA-CTGTAATCTCAGGGAGATAAGACCTGAT
* * * * *
16805 GCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAGTTCATTCCACTATAATC
65 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAAT-
* * * * *
16870 TCAGGGAAATAGGAT-TGCTAGCTTCAATCTGCTTCGTTCTAATCTCAGAGAGATAAGATTCACC
129 TCA-GGAAATAGGATCT-TTA-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACC
* *
16934 ATTTTCGATTAGCTCTACAATTTCTT
191 ATTTTCGATTAGCTCCACTA-TTCTT
* * *
16960 AGAGAGATAAGATCTGGAATT-TCTAGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGAT
1 AGGGAGATAAGATCTGGAATTCT-TCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGAT
* * * *
17024 GCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTGAATCCATTCCACTGTAATC
65 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAAT-
* * * * *
17089 TCAGGGTAATAGGAT-TACTAGCTTTAACCTGCTCCGCTATAATCTCAGGGAGATAAGAT
129 TCA-GGAAATAGGATCT-TTA-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
17148 CTGAAATTCT
Statistics
Matches: 732, Mismatches: 98, Indels: 30
0.85 0.11 0.03
Matches are distributed among these distances:
217 1 0.00
218 7 0.01
219 714 0.98
220 8 0.01
221 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (215 bp):
AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATTC
AGGAAATAGGATCTTTACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTT
CGATTAGCTCCACTATTCTT
Found at i:16225 original size:482 final size:477
Alignment explanation
Indices: 12425--16182 Score: 1860
Period size: 482 Copynumber: 7.8 Consensus size: 477
12415 CCTTTATTTT
* * * * *
12425 AATCTGTTCCACTATAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
* * * * * * **
12490 AGGGAGAGAAGATTCACAATTTTTGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTT
66 AGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAAGATCTGGAACT
* * *
12555 CTTCAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTT
131 CTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
* * * * * * *
12620 TAGAGAGATAAGATCATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGC
196 CAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGC
* * * * * * * * * *
12685 TTCAATTTGCTCCGCCGTAATCTCAGGGAGATAGGATT--ACTGGCTTCAATTTGCTCCGCTGTA
261 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCAAAT-TCTTCAGTCTACTCCACTATA
*** * * * ** * * * *
12748 ATCTTTTGGAGATAAGATTCACCAT-CTTCGATCTGCTCCACTATTGCTCAGGA-AGACAAGATC
325 ATCTCAGGGAGATAAG----ACC-TGATTCGATCTACTCCACTGTAACTTAAGAGAGATAAGACC
* ** * * * * * * * * *
12811 TGGAACTCTTCGGCCTATTCCACAGTAATCTCAGG-GAAATAAG--ACCTGATGCGATCTACTCT
385 T-G-A---TGCGATCTACTCCACTGTAA-CTTAGGAGAAATAAGATACTTGCTTCAATCTGCTCC
* * * *** *
12873 ACTGTAA-CTTCAGAGAGATA--ATATCCTTTATTTT
444 ACTGTAATC-TCAGGGAAATAGGAT-TAC-TGGCTTC
* * * * * *
12907 AATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
* * *
12972 AGGGAGATAAGATTCACCATTTTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAAT
66 AGGGAGATAAGATTCACCATCTTCGATCT-GCTCCACTATTGCTCAGGGAGATAAGATCTGGAAC
* * * * *
13036 TCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAATT
130 TCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACT
* * * * * *
13101 TCAGAGAGATAAGATCCATTATTTTAA-TCTGTTCCACTATAATCTAAGGGAAATAGGATTACTG
195 TCAGAGAGATAAGATCCTTTATTTTAATTC-GCTCCACTGTAATCTCAGGGAGATAGGATTACTA
* * *
13165 GCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACAATT-TTC-GTTTTGCTCCACT
259 GCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCA-AATTCTTCAG-TCTACTCCACT
* * * * * *
13228 AT--TGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAA-TATCAGGGAGATA
322 ATAAT-CTCAGGGAGATAAGACCT-GA-TTC--GA-TCTACTCCACTGTAACT-TAAGAGAGATA
* * * * * **
13290 AGACCTGATGCGATCTACTCTACTATAACATTA-GAGAGATAAGATCCTTTAGTTTCTTTC-GCT
380 AGACCTGATGCGATCTACTCCACTGTAAC-TTAGGAGAAATAAGATAC-TT-GCTTCAATCTGCT
* *
13353 CCACTGTAATCTCAGGCAAATAGGATTACTGGCTTA
442 CCACTGTAATCTCAGGGAAATAGGATTACTGGCTTC
* * *
13389 AATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
** * * * *
13454 TTGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTATTGTTCAGGAAGACAAGATCTGGAACT
66 AGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAAGATCTGGAACT
* * *
13519 CTTCGGCCTATTCCACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTT
131 CTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
* * *
13584 CAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTA-ATAGGATTACTAG
196 CAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAGGG-AGATAGGATTACTAG
* * * * * * *
13648 CATT-AATCTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTA-T-TAGCTCCACT
260 C-TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCA-AATTCTTCAGTCTA-CTCCACT
* * * * * ** *
13710 AT--TGCTTAGGGAGATAAGATCTGGATTTATTC-AGTGTATTCCGCTGTAATCGCATG-GAGAT
322 ATAAT-CTCAGGGAGATAAGACCT-G----ATTCGA-TCTACTCCACTGTAA-CTTAAGAGAGAT
* * * ** * *
13771 AAGACCTGATGCGATCTACTCTACTGTAACTTTA-GAGAGATAAGATCCTTTATTTTAATCCGCT
379 AAGACCTGATGCGATCTACTCCACTGTAAC-TTAGGAGAAATAAGATAC-TTGCTTCAATCTGCT
* *
13835 CCACTGTAATATCAGGCAAATAGGATTACTGGCTTC
442 CCACTGTAATCTCAGGGAAATAGGATTACTGGCTTC
* * * * *
13871 AATTTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
** * * * *
13936 TTGGAGATAAGATTCACCGTCTTCGATCTGCTCCATTATTGCTCAGGAAGACAAGATCTGGAACT
66 AGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAAGATCTGGAACT
* **
14001 CTTCGGTCTATTCCACAGTAATCTCATAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
131 CTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
* * * * *
14066 CAGAGAGATAATATCATTTATTTTAATCCGTTCAACTGTAATCTCAGGGTA-ATAGGATTACTAG
196 CAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAGGG-AGATAGGATTACTAG
* * * * * * *
14130 CATT-AATCTGCTCTGTTATAATCTCAGGGAGATCAGATTCACCATTTTTTA-T-TAGCTCCACT
260 C-TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCA-AATTCTTCAGTCTA-CTCCACT
* * * * * ** *
14192 AT--TGCTTAGGGAGATAAGATCTGGATTTATTC-AGTGTATTCCGCTGTAATCGCATG-GAGAT
322 ATAAT-CTCAGGGAGATAAGACCT-G----ATTCGA-TCTACTCCACTGTAA-CTTAAGAGAGAT
* * * **
14253 AAGACCTGATGCGATCTACTCTACTGTAACTTTA-GAGAGATAAGATCCTTTATTTTC-ATCTGC
379 AAGACCTGATGCGATCTACTCCACTGTAAC-TTAGGAGAAATAAGATAC-TT-GCTTCAATCTGC
* * * *
14316 TCCACTATAATATTAGGGAAATAGGATTACTTGCTTC
441 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTC
* * * * *
14353 AATTTTCTCCGCTGTAATCTCAGGGAGATAGGTTTACTGGGTTTAATCTGCTCCGCTGTAATCTC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
* *** * * * * * * *
14418 AGGGAGATAGGATT-ACTGGCTTCAATCTGCTCCGCTGTAAT-CTTATGGAGATAAGAT-T-CAC
66 AGGGAGATAAGATTCACCATCTTCGATCTGCTCCAC--TATTGCTCAGGGAGATAAGATCTGGAA
* ** * * * * * * *
14479 CGTCTTCGATCTGCTCCAC--TATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCCA
129 C-TCTTCGGTCTATTCCACTGTAAT-CTCAGGGAGATAAGACCT-G----ATGCGATCTACTCTA
* * * *** * * * *
14542 CTGTAA-TCTGAGGGAGATAAGA-CC-TGA-TGCGA-TCTACTCTACTGTAA-CTTCAGAGAGGT
187 CTGTAACT-TCAGAGAGATAAGATCCTTTATTTTAATTC-GCTCCACTGTAATC-TCAGGGAGAT
* * * * * * * * * *
14601 AAGATCCT-TTA-TTTTAAT-TCGCTCCACCGTAATCTTAGGGAGATAGGATT--ACTAGCTTCA
249 AGGAT--TACTAGCTTCAATCT-GCTCCGCTGTAATCTCAGGGAGATAAGATTCAAAT-TCTTCA
* * * * * * * *
14661 ATC-AGCTCCGCTGTGATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAA-T
310 GTCTA-CTCCACTATAATCTCAGGGAGATAAGACCTG--A---TTCGATCTACTCCACTGTAACT
* * * * * * * **
14724 CTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATT
369 -TAAGAGAGATAAGACCTGATGCGATCTACTCCACTGTAACTTAGGAGAAATAAGATACTTGCTT
* * *
14789 CTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTC
433 C-AATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTC
* * * ** * * *
14835 AATCTGCTCCGCTGTAATCTCACGGAGATAAGATTCACCGTTTTCGAT-TAGCTCCAC--TATTG
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATCT-GCTCCGCTGTAAT-
* * * ** * * * * *
14897 CTTAGGGAGATAAGATCTGGA--ATTCTTCGGTCTATTCCAGTGGAAT-CTCAGGGAGTTTAGAC
63 CTCAGGGAGATAAGAT-T-CACCA-TCTTCGATCTGCTCCACT--ATTGCTCAGGGAGATAAGAT
* ** * * * * *** **
14959 CT-G-A---TGCAATCTACTCTACTGTAAAT-TCAGAGAGATAAGATCCTTTATTTTAATCTGTT
123 CTGGAACTCTTCGGTCTATTCCACTGT-AATCTCAGGGAGATAAGA-CC-TGA-TGCGATCTACT
* * * * * * * *** * *
15018 CCACTATAA-TCTAAGGGAAATAGGATTAC-TGGCTTCAA-TCTGCTCCGCTGTAATCTCAGGGA
184 CTACTGTAACT-TCAGAGAGATAAGA-TCCTTTATTTTAATTC-GCTCCACTGTAATCTCAGGGA
* * * ** * * * * * ** *
15080 GAGAAGATTCACAATTTTCGATTTGCTCCAC--TATTGCTTAGGGAGATAAGATCTGGATTTCTT
246 GATAGGATT-ACTAGCTTCAATCTGCTCCGCTGTAAT-CTCAGGGAGATAAGAT-TCAAATTCTT
* * * * * * *
15143 CAGTCTATTCCATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTTAG
308 CAGTCTACTCCACTATAATCTCAGGGAGATAAGACCTGATTCGATCTACTCCACTGTAACTTAAG
* * * ** * * * *
15208 AGAGATAAGATCATTTATTTTC-ATCCGCTCCACTGTAATCTCAGG-CAAATAGGATTACTGGCT
373 AGAGATAAGA-C-CTGA--TGCGATCTACTCCACTGTAA-CTTAGGAGAAATAAGA-TACTTGCT
* * *
15271 TCAATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTC
432 TCAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTC
* * *** * *** * * *
15317 AATTTGCTCTGCTGTAATCTTTTGGAGATAAGATTCACCATCTTCGATCTGCTCCAC--TATTGC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATT-ACTGGCTTCAATCTGCTCCGCTGTAAT-C
* * * * ** ** * * *
15380 TCAGGAAGACAAGATCTGGAAC-TCTTCGGCCTATTCCACAGTAAT-CTCAGGGAAATAAGACCT
64 TCAGGGAGATAAGAT-T-CACCATCTTCGATCTGCTCCAC--TATTGCTCAGGGAGATAAGATCT
* * * * * * * *** *** *
15443 -G-A---TGCGATCTACTCTACTGTAA-CTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCC
125 GGAACTCTTCGGTCTATTCCACTGTAATC-TCAGGGAGATAAGA-CC-TGA-TGCGATCTACTCT
* * * ** *** * *
15502 ACTGTAA-TCTCAGGGTA-ATAGGAT--TACTAGCATTAATAT-GCTCTGTTATAATGTCAGGGA
186 ACTGTAACT-TCAGAG-AGATAAGATCCT-TTA-TTTTAAT-TCGCTCCACTGTAATCTCAGGGA
* * ** ** * * * * * ** * *
15562 GATCA-TATTCACCATTTTTTTAT-TAGTTCCACTATTA-CTTAGGGAGATAAGATCTGGATTTA
246 GAT-AGGATT-ACTA-GCTTCAATCT-GCTCCGCTGTAATCTCAGGGAGATAAGAT-TCAAATTC
* * * * * * * * *
15624 TTCAGTTTATTCCGCTGTAATCTCATGGAGATAAGACTTGATGCGATCTACTCTACTGTAACTTT
306 TTCAGTCTACTCCACTATAATCTCAGGGAGATAAGACCTGATTCGATCTACTCCACTGTAACTTA
* * * * *
15689 AGAGAGATAAGATCCTTTATTTTC-ATCTGCTCCACTATAA-TATCAGG-GAAATAGGATTACTT
371 AGAGAGATAAGA-CC-TGA--TGCGATCTACTCCACTGTAACT-T-AGGAGAAATAAGA-TACTT
* * * * *
15751 GCTTCAATTTTCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGGTTC
429 GCTTCAATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTC
*
15800 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
* * *
15865 ATGGAGATAAGATTCACCGTCTTCGATCTGCTCCACTATTGCTCAGGGAGAAAAGATCTGGAACT
66 AGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAAGATCTGGAACT
*
15930 ATTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
131 CTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
* *
15995 CAGAGAGGTAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGC
196 CAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGC
* * * * *
16060 TTCAATCAGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCCTCGGTCTATTCCACTATA
261 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT-TCAAATTCTTCAGTCTACTCCACTATA
* *
16125 ATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGA
325 ATCTCAGGGAGATAAGACCTGATTCGATCTACTCCACTGTAACTTAAGAGAGATAAGA
16183 TTCTTTATTT
Statistics
Matches: 2670, Mismatches: 461, Indels: 290
0.78 0.13 0.08
Matches are distributed among these distances:
477 1 0.00
478 5 0.00
479 83 0.03
480 43 0.02
481 121 0.05
482 1879 0.70
483 384 0.14
484 82 0.03
485 42 0.02
486 29 0.01
487 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (477 bp):
AATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTC
AGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAAGATCTGGAACT
CTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
CAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGC
TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCAAATTCTTCAGTCTACTCCACTATAA
TCTCAGGGAGATAAGACCTGATTCGATCTACTCCACTGTAACTTAAGAGAGATAAGACCTGATGC
GATCTACTCCACTGTAACTTAGGAGAAATAAGATACTTGCTTCAATCTGCTCCACTGTAATCTCA
GGGAAATAGGATTACTGGCTTC
Found at i:16636 original size:438 final size:436
Alignment explanation
Indices: 16086--17147 Score: 1515
Period size: 438 Copynumber: 2.4 Consensus size: 436
16076 GTAATCTCAG
* *
16086 GGAGATAAGATCTGAAATTCCTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCG
1 GGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCG
* * *
16151 ATCTACTCTACTGTAACTTAAGAGAGATAAGATTCTTTATTTTAATCCGTTCCACTGTAATCTTA
66 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCA
* * * *
16216 GGAAAATAGGGTTACTGGCTTCAATTTGTTCCGCTGTAATCTCAAGGAGATAAGATTCACCATTT
131 GG-AAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTT
* * * * *
16281 TCGATTAGCTCAACTATTTCTTCGGGAGATATGATATGGAATTCTTCGGTCTATTCCA-CTGTAA
195 TCGATTAGCTCAACTATTGCTTAGGGAGATAAGATATGAAATTCTTAGGTCTATTCCAGC-GTAA
* *
16345 TCTCAAGCAGATAAGA-CTAGATGCAATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTA
259 TCTCAAGCAGATAAGACCT-GATGCAATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTA
* *
16409 TTTTAA-TCTGTTCCACTGTAATCT-AGGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTAT
323 TTTTAATTC-ATTCCACTATAATCTCA-GGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTAT
*
16472 AATCTCA-ATGAGATAAGATTCACCAATTTCGATTAGCTCCACTATTGCTTA
386 AATCTCAGA-GAGATAAGATTCACCAATTTCGATTAGCTCCACAATTGCTTA
* * *
16523 TGGAGATAAGATCTGGAATTCTTCGGTGTATTCTACTATAATCTTAGGGAGATAAGACCTGATGC
1 -GGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGC
*
16588 GATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTC
65 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTC
* *
16653 ATGGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATT
130 A-GGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATT
* *
16718 TTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGAAATTCTTAGGTCTATTCCAGCGTAA
194 TTCGATTAGCTCAACTATTGCTTAGGGAGATAAGATATGAAATTCTTAGGTCTATTCCAGCGTAA
** * * *
16783 TCTCTGGGAGGTAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTAT
259 TCTCAAGCAGATAAGACCTGATGCAATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTAT
* * * * *
16848 TTTAGTTCATTCCACTATAATCTCAGGGAAATAGGATTGCTAGCTTCAATCTGCTTCGTTCTAAT
324 TTTAATTCATTCCACTATAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAAT
* * *
16913 CTCAGAGAGATAAGATTCACCATTTTCGATTAGCTCTACAATTTCTTA
389 CTCAGAGAGATAAGATTCACCAATTTCGATTAGCTCCACAATTGCTTA
* * *
16961 GAGAGATAAGATCTGGAATT-TCTAGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATG
1 G-GAGATAAGATCTGGAATTCT-TCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
* * * *
17025 CGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTGAATCCATTCCACTGTAATCT
64 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* * * * *
17090 CAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTATAATCTCAGGGAGATAAGAT
129 CA-GGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
17148 CTGAAATTCT
Statistics
Matches: 557, Mismatches: 59, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
437 2 0.00
438 546 0.98
439 9 0.02
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (436 bp):
GGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCG
ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCA
GGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTT
CGATTAGCTCAACTATTGCTTAGGGAGATAAGATATGAAATTCTTAGGTCTATTCCAGCGTAATC
TCAAGCAGATAAGACCTGATGCAATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTT
TAATTCATTCCACTATAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCT
CAGAGAGATAAGATTCACCAATTTCGATTAGCTCCACAATTGCTTA
Found at i:17086 original size:85 final size:85
Alignment explanation
Indices: 16990--17270 Score: 241
Period size: 85 Copynumber: 3.2 Consensus size: 85
16980 TTCTAGGTCT
* *
16990 ATTCCACTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGAT
1 ATTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGAT
*
17055 AATATCCTTTACTTGAATCC
66 AAGATCCTTTACTTGAATCC
* * * *** * * ** * *
17075 ATTCCACTGTAATCTCAGGGTA-ATAGGATTACTAGCTTTAACCTGCTCCGCTATAA-TCTCAGG
1 ATTCCACTGTAATCTCAGGG-AGATAAGA--CCT-GATACGATCTACTCTACTGTAACT-TCAGA
*
17138 GAGATAAGAT-CTGAAATT-CTTTG-ATCT
61 GAGATAAGATCCT----TTAC-TTGAATCC
* *
17165 ATTCCACTATAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTAAGAGAGAT
1 ATTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGAT
*
17230 AAGATCCTTTA-TTCTAATCC
66 AAGATCCTTTACTT-GAATCC
*
17250 GTTCCACTGTAATCTCAGGGA
1 ATTCCACTGTAATCTCAGGGA
17271 AATAGGATTG
Statistics
Matches: 147, Mismatches: 33, Indels: 32
0.69 0.16 0.15
Matches are distributed among these distances:
83 2 0.01
84 2 0.01
85 46 0.31
86 1 0.01
87 31 0.21
88 31 0.21
89 1 0.01
90 28 0.19
91 5 0.03
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (85 bp):
ATTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGAT
AAGATCCTTTACTTGAATCC
Found at i:17190 original size:613 final size:613
Alignment explanation
Indices: 14411--17760 Score: 2064
Period size: 613 Copynumber: 5.5 Consensus size: 613
14401 TGCTCCGCTG
* * * * * *
14411 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATG-GAGATAAGAT
1 TAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTCTAATCTCA-GAGAGAGAAGAT
* * * * * * ** * *
14475 TCACCGTCTTCGATCT-GCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATT
65 TCACCATTTTCGAT-TAGCTCCACAATTGCTTAGAGAGATAAGATCTGGATTTCTTCAGTCTATT
* * *
14539 CCACTGTAATCTGAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAAG
129 CCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAG
* * * ** * * * *
14604 ATCCTTTATTTTAATTCGCTCCACCGTAATCTTAGGGAGATAGGATTACTAGCTTCAATC-AGCT
194 ATCCTTTACTTGAATCCATTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAACCTA-CT
** * *
14668 CCGCTGTGATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAG
258 CCGCCATAATCTCAGGGAGATAAGATCTGAAATTCTTCGATCTATTCCACTATAATCTCAGGGAG
* *
14733 ATAAGACCTGATGCGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGT
323 ATAAGACCTGATACGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGT
* * * *
14798 TCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCCGCTGTAATCTCACGGAGA
388 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGA
* * *
14863 TAAGATTCACCGTTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGT
453 TAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGAAATTCTTAGGT
* * * * * *
14928 CTATTCCAGTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAG
518 CTATTCCACTGGAATCTCAGGGAGGTAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAG
* * *
14993 ATAAGATCCTTTATTTTAATCTGTTCCACTA
583 ATAAAATCCTTTATTTTAATATATTCCACTA
* * *
15024 TAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATT
1 TAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTCTAATCTCAGAGAGAGAAGATT
* * * *
15089 CACAATTTTCGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCC
66 CACCATTTTCGATTAGCTCCACAATTGCTTAGAGAGATAAGATCTGGATTTCTTCAGTCTATTCC
* * * *
15154 ATTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTTAGAGAGATAAGAT
131 ACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT
* * ** ** * * ** *
15219 CATTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCG
196 CCTTTACTTGAATCCATTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAACCTACTCCG
** * * * * * ** ** * ***
15284 CTGTAATCTCAGGGAGATAGGAT-T--ACTGGCTTCAATTTGCTCTGCTGTAATCTTTTGGAGAT
261 CCATAATCTCAGGGAGATAAGATCTGAAAT-TCTTCGATCTATTCCACTATAATCTCAGGGAGAT
* * * * * ** * * * ** * **
15346 AAGATTCACCAT-CTTCGATCTGCTCCACTATTGCTCAGGA-AGACAAGAT-CTGGAACTCTTCG
325 AAG----ACC-TGATACGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCT-TTATTC-TAA
* * * * * * * * * * *
15408 GCCTATTCCACAGTAATCTCAGGGAAATAAGA--CCT-GATGCGATCTACTCTACTGTAA-CTTC
383 TCC-GTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATC-TC
* * * *** * ** * * * *
15469 AGAGAGATAATATCCTTTATTTT-AATCCGTTCCACTGTAAT-CTCAGGGTA-ATAGGATTACT-
446 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCAC--TATTGCTTAGGG-AGATAAGA-T-CTG
* ** * * * * * ** *** *
15530 AGCATTAATATGCTCTGTT--A-T--AATGTCAGGGAGATCATATTCACCATTTTTTTAT-TAGT
506 A-AATTCTTA-GGTCTATTCCACTGGAATCTCAGGGAGGT-A-A--GACC-TGATGCGATCTA-C
* * * * * * * * * *
15589 TCCACTA-TTACTT-AGGGAGATAAGATCTGGATTTA-TTCAGTTTATTCCGCTG
563 TCTAC-AGTAACTTCAGAGAGATAAAATC---CTTTATTTTAATATATTCCACTA
* * * * * * * * * ** * * *
15641 TAATCTCATGGAGATA--A-GACTTGATGCGATCTACTCTACTGTAA-CTTTAGAGAGATAAGAT
1 TAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTCTAATC-TCAGAGAGAGAAGAT
* *** * * * * * * * *
15702 CCTTTATTTTC-ATCT-GCTCCACTATAAT-ATCAGGGAAATAGGAT-T--ACTTGCTTCAAT-T
65 TCACCATTTTCGAT-TAGCTCCAC-A-ATTGCTTAGAGAGATAAGATCTGGA-TTTCTTCAGTCT
* * * * * * * * * ** *
15760 TTCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGGTTCAATCTGCTCCGCTGTAA-TCTCAGG
126 AT-TCCACTGTAATCTCAGAGAGATAAGA--CCT-GATGCGATCTACTCTACTGTAACT-TCAGA
* * ** * *** * * * * * *
15824 GAGATAGGATTAC-TGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCAC-CGTCT
186 GAGATAAGA-TCCTTTACTTGAATCCATTCCACTGTAATCTCAGGGAAATAGGATT-ACTAG-CT
* * * * * * * * * * *
15887 TCGATCTGCTCC-AC-TATTGCTCAGGGAGAAAAGATCTGGAACTATTCGGTCTATTCCACTGTA
248 TCAACCTACTCCGCCATAAT-CTCAGGGAGATAAGATCTGAAATTCTTCGATCTATTCCACTATA
* * *
15950 ATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAAGATCCTTTA
312 ATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTA
* * * * * * * * *
16015 TTTTAATTCGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCAGCTCCGCTGTAA
377 TTCTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAA
* * * * * *
16080 TCTCAGGGAGATAAGATCTGA-AATTCCTCGGTCTA-TTCCACTATAAT-CTCAGGGAGATAAGA
442 TCTCAGGGAGATAAGAT-TCACCATT-TTCGAT-TAGCTCCACTAT--TGCTTAGGGAGATAAGA
* * * * * * * * * * * *** ***
16142 CCTG--ATGC---GATCTACTCTACTGTAA-CTTAAGAGAGATAAGATTCTTTATTTTAATCCGT
502 TCTGAAATTCTTAGGTCTATTCCACTGGAATC-TCAGGGAGGTAAGA--CCTGA-TGCGATCTAC
* * * *** * * * * *
16201 TCCACTGTAATCTT-AG-GA-A-AATA-GGGTTACTGGCTTCAATTTGTTCCGCTG
563 TCTACAGTAA-CTTCAGAGAGATAAAATCCTTTA-T---TTTAATATATTCCACTA
* * * ** * ** * * * * *
16252 TAATCTCAA-GGAGATAAGATTCACCATTTTCGAT-TAGCTCAACTAT-TTCTTC-GGGAGATAT
1 TAATCT-AAGGGAAATAGGATT-ACTAGCTTCAATCT-GCTCCGCTCTAATC-TCAGAGAGAGAA
* * * * *
16313 GATATGGA--ATTCTTCGGTCTA-TTCCACTGTAA-T-CTCA-AGCAGATAAGA-CTAGA----T
62 GAT-T-CACCATT-TTCGAT-TAGCTCCAC---AATTGCTTAGAG-AGATAAGATCTGGATTTCT
* * * * * * *** ** *
16367 GCAATCTACTCTACTGTAA-CTTCAGAGAGATAATATCCTTTATTTTAATCTGTTCCACTGTAA-
119 TCAGTCTATTCCACTGTAATC-TCAGAGAGATAAGA-CC-TGA-TGCGATCTACTCTACTGTAAC
* * * * * *** * * ** * *
16430 -TCTAGGGGAAATAGGAT--TACTAGCTTCAATCTGCTCCGCTATAATCTCAATGAGATAAGATT
180 TTC-A-GAGAGATAAGATCCT-TTA-CTTGAATCCATTCCACTGTAATCTCAGGGAAATAGGATT
* ** * * * * * * * * *
16492 CACCAATTTCGA-TTAGCTCC-AC-TATTGCTTATGGAGATAAGATCTGGAATTCTTCGGTGTAT
241 -ACTAGCTTCAACCTA-CTCCGCCATAAT-CTCAGGGAGATAAGATCTGAAATTCTTCGATCTAT
* * * * *
16554 TCTACTATAATCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGCGATAA
303 TCCACTATAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTAAGAGAGATAA
* *
16619 GATCCTTTATTTTAATCCGTTCCACTGTAATCTCATGGAAATAGGATTACTGGCTTCAATCTGCT
368 GATCCTTTATTCTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCT
16684 CTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGAT
433 CTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGAT
* *
16749 AAGATCTGAAATTCTTAGGTCTATTCCAGC-GTAATCTCTGGGAGGTAAGACCTGATGCGATCTA
498 AAGATCTGAAATTCTTAGGTCTATTCCA-CTGGAATCTCAGGGAGGTAAGACCTGATGCGATCTA
* *
16813 CTCTACTA-TAACTTCAGAGAGATAAGATCCTTTATTTTAGT-TCATTCCACTA
562 CTCTAC-AGTAACTTCAGAGAGATAAAATCCTTTATTTTAATAT-ATTCCACTA
* * * * *
16865 TAATCTCAGGGAAATAGGATTGCTAGCTTCAATCTGCTTCGTTCTAATCTCAGAGAGATAAGATT
1 TAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTCTAATCTCAGAGAGAGAAGATT
* *
16930 CACCATTTTCGATTAGCTCTACAATTTCTTAGAGAGATAAGATCTGGAATTTC-T-AGGTCTATT
66 CACCATTTTCGATTAGCTCCACAATTGCTTAGAGAGATAAGATCTGG-ATTTCTTCA-GTCTATT
16993 CCACTGTAATCTCA-AGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
129 CCACTGTAATCTCAGA-GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
* * * *
17057 TATCCTTTACTTGAATCCATTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTAACCTGCT
193 GATCCTTTACTTGAATCCATTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAACCTACT
* *
17122 CCGCTATAATCTCAGGGAGATAAGATCTGAAATTCTTTGATCTATTCCACTATAATCTCAGGGAG
258 CCGCCATAATCTCAGGGAGATAAGATCTGAAATTCTTCGATCTATTCCACTATAATCTCAGGGAG
17187 ATAAGACCTGATACGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGT
323 ATAAGACCTGATACGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGT
* *
17252 TCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGA
388 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGA
* * *
17317 TAAGATTCACCATTTTTGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGT
453 TAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGAAATTCTTAGGT
* *
17382 CTATTCCACTGGAATCTCAGGGAGTTCAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAG
518 CTATTCCACTGGAATCTCAGGGAGGTAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAG
* *
17447 ATAAAATCCTTTATTTTAATATGTTCCACTG
583 ATAAAATCCTTTATTTTAATATATTCCACTA
* * * *
17478 TAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGAGAAGATT
1 TAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTCTAATCTCAGAGAGAGAAGATT
* *
17543 CACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCC
66 CACCATTTTCGATTAGCTCCACAATTGCTTAGAGAGATAAGATCTGGATTTCTTCAGTCTATTCC
*
17608 ACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGCGATAAGAT
131 ACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT
* * * * * *
17673 CCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTACTCTG
196 CCTTTACTTGAATCCATTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAACCTACTCCG
*
17738 CCGTAATCTCAGGGAGATAAGAT
261 CCATAATCTCAGGGAGATAAGAT
17761 TCACCATTTT
Statistics
Matches: 2105, Mismatches: 475, Indels: 314
0.73 0.16 0.11
Matches are distributed among these distances:
606 3 0.00
609 7 0.00
610 8 0.00
611 107 0.05
612 156 0.07
613 1290 0.61
614 128 0.06
615 190 0.09
616 132 0.06
617 76 0.04
618 8 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (613 bp):
TAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTCTAATCTCAGAGAGAGAAGATT
CACCATTTTCGATTAGCTCCACAATTGCTTAGAGAGATAAGATCTGGATTTCTTCAGTCTATTCC
ACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT
CCTTTACTTGAATCCATTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAACCTACTCCG
CCATAATCTCAGGGAGATAAGATCTGAAATTCTTCGATCTATTCCACTATAATCTCAGGGAGATA
AGACCTGATACGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCC
ACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAA
GATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGAAATTCTTAGGTCTA
TTCCACTGGAATCTCAGGGAGGTAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATA
AAATCCTTTATTTTAATATATTCCACTA
Found at i:17206 original size:175 final size:175
Alignment explanation
Indices: 16963--17322 Score: 535
Period size: 175 Copynumber: 2.1 Consensus size: 175
16953 ATTTCTTAGA
* * * *
16963 GAGATAAGATCTGGAATTTCTAGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATGCGA
1 GAGATAAGATCTGAAATTTCTAGATCTATTCCACTATAATCTCAAGGAGATAAGACCTGATACGA
* *
17028 TCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTT-GAATCCATTCCACTGTAATCTCA
66 TCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTA-TTCGAATCCATTCCACTGTAATCTCA
* *
17092 GGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTATAATCTCAGG
130 GGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTCAGG
* *
17138 GAGATAAGATCTGAAA-TTCTTTGATCTATTCCACTATAATCTCAGGGAGATAAGACCTGATACG
1 GAGATAAGATCTGAAATTTC-TAGATCTATTCCACTATAATCTCAAGGAGATAAGACCTGATACG
* *
17202 ATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCTCA
65 ATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCGAATCCATTCCACTGTAATCTCA
* * * * *
17267 GGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGG
130 GGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTCAGG
17313 GAGATAAGAT
1 GAGATAAGAT
17323 TCACCATTTT
Statistics
Matches: 166, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
174 5 0.03
175 161 0.97
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31
Consensus pattern (175 bp):
GAGATAAGATCTGAAATTTCTAGATCTATTCCACTATAATCTCAAGGAGATAAGACCTGATACGA
TCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCGAATCCATTCCACTGTAATCTCAG
GGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTCAGG
Found at i:17228 original size:394 final size:394
Alignment explanation
Indices: 16741--17541 Score: 1176
Period size: 394 Copynumber: 2.0 Consensus size: 394
16731 ACTATTGCTT
* * * * *
16741 AGGGAGATAAGATCTGAAATTCTTAGGTCTATTCCAGCGTAATCTCTGGGAGGTAAGACCTGATG
1 AGGGAGATAAGATCTGAAATTCTTAGATCTATTCCAGCATAATCTCAGGGAGATAAGACCTGATA
* * * *
16806 CGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAGTTCATTCCACTATAATCT
66 CGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCATTCCACTATAATCT
*
16871 CAGGGAAATAGGATTGCTAGCTTCAATCTGCT-TCGTTCTAATCTCAGAGAGATAAGATTCACCA
131 CAGGGAAATAGGATTGCTAGCTTCAATCTGCTCT-GCTCTAATCTCAGAGAGATAAGATTCACCA
* *
16935 TTTTCGATTAGCTCTACAATTTCTTAGAGAGATAAGATCTGGAATT-TCTAGGTCTATTCCACTG
195 TTTTCGATTAGCTCCACAATTGCTTAGAGAGATAAGATCTGGAATTCT-TAGGTCTATTCCACTG
* * *
16999 TAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTT
259 GAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTT
* * * *
17064 TACTTGAATCCATTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTAT
324 TACTTGAATACATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTAT
17129 AATCTC
389 AATCTC
*
17135 AGGGAGATAAGATCTGAAATTCTTTGATCTATTCCA-CTATAATCTCAGGGAGATAAGACCTGAT
1 AGGGAGATAAGATCTGAAATTCTTAGATCTATTCCAGC-ATAATCTCAGGGAGATAAGACCTGAT
* * *
17199 ACGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATC
65 ACGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCATTCCACTATAATC
* * *
17264 TCAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCA
130 TCAGGGAAATAGGATTGCTAGCTTCAATCTGCTCTGCTCTAATCTCAGAGAGATAAGATTCACCA
* * * *
17329 TTTTTGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGG
195 TTTTCGATTAGCTCCACAATTGCTTAGAGAGATAAGATCTGGAATTCTTAGGTCTATTCCACTGG
* * *
17394 AATCTCAGGGAGTTCAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTT
260 AATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTT
* * ** * * *
17459 ATTTTAATATGTTCCACTGTAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTA
325 ACTTGAATACATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATA
*
17524 ATCTT
390 ATCTC
*
17529 AGGGAGAGAAGAT
1 AGGGAGATAAGAT
17542 TCACCATTTT
Statistics
Matches: 362, Mismatches: 42, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
393 1 0.00
394 359 0.99
395 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (394 bp):
AGGGAGATAAGATCTGAAATTCTTAGATCTATTCCAGCATAATCTCAGGGAGATAAGACCTGATA
CGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTCTAATCCATTCCACTATAATCT
CAGGGAAATAGGATTGCTAGCTTCAATCTGCTCTGCTCTAATCTCAGAGAGATAAGATTCACCAT
TTTCGATTAGCTCCACAATTGCTTAGAGAGATAAGATCTGGAATTCTTAGGTCTATTCCACTGGA
ATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTA
CTTGAATACATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAA
TCTC
Found at i:17261 original size:219 final size:217
Alignment explanation
Indices: 17135--18198 Score: 1504
Period size: 219 Copynumber: 4.9 Consensus size: 217
17125 CTATAATCTC
* * *
17135 AGGGAGATAAGATCTGAAATTCTTTGATCTATTCCACTATAATCTCAGGGAGATAAGACCTGATA
1 AGGGAGATAAGATCTGGAATTCTTTGATCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* *
17200 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* * *
17265 CAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCAT
131 CAGGGAAATA-GATTACTGGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATTCACCAT
*
17330 TTTTGATTAGCTCCACTATTGCTT
195 TTTCGATTAGCTCCACTATT-CTT
* * * * *
17354 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTCAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTTGATCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* * **
17419 CGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATATGTTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* * * *
17484 AAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGAGAAGATTCACCAT
131 CAGGGAAATA-GATTACTGGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATTCACCAT
17549 TTTCGATTAGCTCCACTATTGCTT
195 TTTCGATTAGCTCCACTATT-CTT
* * *
17573 AGGGAGATAAGATCTGGATTTC-TTCAGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGAT
1 AGGGAGATAAGATCTGGAATTCTTTGA-TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGAT
*
17637 GCGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATC
65 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATC
* *
17702 TCAGGGAAATAGGATTACTGGCTTCAATCTACTCTGCCGTAATCTCAGGGAGATAAGATTCACCA
130 TCAGGGAAATA-GATTACTGGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATTCACCA
17767 TTTTCGATTAGCTCCACTATTTCTT
194 TTTTCGATTAGCTCCACTA-TTCTT
* * * *
17792 AGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCAGC-GTAATCTCTGGGAGGTAAGACCTGAT
1 AGGGAGATAAGATCTGGAATTCTTTGATCTATTCCA-CTGTAATCTCAGGGAGATAAGACCTGAT
* * *
17856 GCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCACTGTAATC
65 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATC
* * * * * *
17921 TCAGGGAAATAGGATTGCTAGCTTCAATCTGCTTCGTTCTAATCTCAGGGAGATAAGATTCACCA
130 TCAGGGAAATA-GATTACTGGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATTCACCA
17986 TTTTCGATTAGCTCCACTATTTCTT
194 TTTTCGATTAGCTCCACTA-TTCTT
* * * * *
18011 AGAGAGATAAGATCTGGAATTC-CTAAGTCTATTCCACTCTAATCTCAAGGAGATAAGACCTGAT
1 AGGGAGATAAGATCTGGAATTCTTTGA-TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGAT
* * *
18075 GCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTGAATCCGTTCCACTGTAATC
65 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATC
* * * * * *
18140 TCAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTATAATCTCAGGGAGATAAGAT
130 TCAGGGAAATA-GATTACTGGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGAT
18199 CTAAAATTCT
Statistics
Matches: 759, Mismatches: 80, Indels: 12
0.89 0.09 0.01
Matches are distributed among these distances:
218 2 0.00
219 753 0.99
220 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (217 bp):
AGGGAGATAAGATCTGGAATTCTTTGATCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
CAGGGAAATAGATTACTGGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATTCACCATT
TTCGATTAGCTCCACTATTCTT
Found at i:17366 original size:657 final size:653
Alignment explanation
Indices: 16084--17328 Score: 1503
Period size: 657 Copynumber: 1.9 Consensus size: 653
16074 CTGTAATCTC
*
16084 AGGGAGATAAGATCTGAAATTCCTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGAAATTCCTAGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
* * * *
16149 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATTCTTTATTTTAATCCGTTCCACTGTAATCT
66 CGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTATAATCT
* * * * *
16214 TAGGAAAATAGGGTTACTGGCTTCAATTTGTTCCGCTGTAATCTCAAGGAGATAAGATTCACCAT
131 CAGGAAAATAGGATTACTAGCTTCAATCTGTTCCGCTCTAATCTCAAGGAGATAAGATTCACCAT
* * * * *
16279 TTTCGATTAGCTCAACTATTTCTTCGGGAGATATGATATGGAATTCTTCGGTCTATTCCACTGTA
196 TTTCGATTAGCTCAACAATTTCTTAGAGAGATAAGATATGGAATTCTTAGGTCTATTCCACTGTA
16344 ATCTCAAGCAGATAAGACTAGATGCAATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTA
261 ATCTCAAGCAGATAAGACTAGATGCAATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTA
* * ** *
16409 TTTTAATCTGTTCCACTGTAATCTAGGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAA
326 CTTGAATCCATTCCACTGTAATCTAGGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAA
* * * *
16474 TCTCAATGAGATAAGATTCACCAATTTCGATTAGCTCCACTATTGCTTATGGAGATAAGATCTGG
391 TCTCAAGGAGATAAGATTCA-CAATTTCGATTAGCTCCACTATTGCTCAGGGAGATAAGACCTGG
* * * * * * * *
16539 AATTCTTCGGTGTATTCTACTATAATCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGTA
455 AA-T-TACGATCTACTCTACTATAATCTTAGAGAGATAAGACCTGATGCAATCCACTCCACTGTA
** * * * * * *
16604 ACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCATGGAAATAGGATTAC
518 ACTTCAGAGAAATAAGATCCTTGACTTCAATCCGCTCCACTGTAATCTCAGGGAAATAAGATTAC
**
16669 TGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACT
583 CAGCTTCAATCTGCTC-GCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACT
16734 ATTGCTT
647 ATTGCTT
* * * *
16741 AGGGAGATAAGATCTGAAATTCTTAGGTCTATTCCAGC-GTAATCTCTGGGAGGTAAGACCTGAT
1 AGGGAGATAAGATCTGAAATTCCTAGGTCTATTCCA-CTATAATCTCAGGGAGATAAGACCTGAT
* * *
16805 GCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAGTTCATTCCACTATAATC
65 GCGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTATAATC
* * *
16870 TCAGGGAAATAGGATTGCTAGCTTCAATCTGCTT-CGTTCTAATCTC-AGAGAGATAAGATTCAC
130 TCAGGAAAATAGGATTACTAGCTTCAATCTG-TTCCGCTCTAATCTCAAG-GAGATAAGATTCAC
* *
16933 CATTTTCGATTAGCTCTACAATTTCTTAGAGAGATAAGATCTGGAATT-TCTAGGTCTATTCCAC
193 CATTTTCGATTAGCTCAACAATTTCTTAGAGAGATAAGATATGGAATTCT-TAGGTCTATTCCAC
* *
16997 TGTAATCTCAAGGAGATAAGACCT-GATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATC
257 TGTAATCTCAAGCAGATAAGA-CTAGATGCAATCTACTCTACTGTAACTTCAGAGAGATAATATC
* *
17061 CTTTACTTGAATCCATTCCACTGTAATCTCA-GGGTAATAGGATTACTAGCTTTAACCTGCTCCG
321 CTTTACTTGAATCCATTCCACTGTAATCT-AGGGGAAATAGGATTACTAGCTTCAACCTGCTCCG
* * * *
17125 CTATAATCTCAGGGAGATAAGATCTGA-AATTCTTTGATCTA-TTCCACTATAAT-CTCAGGGAG
385 CTATAATCTCAAGGAGATAAGAT-TCACAA-T-TTCGAT-TAGCTCCACTAT--TGCTCAGGGAG
* * *
17187 ATAAGACCT-G-A-TACGATCTACTCTACTGTAA-CTTAAGAGAGATAAGATCCTTTATTCTAAT
444 ATAAGACCTGGAATTACGATCTACTCTACTATAATCTT-AGAGAGATAAGA-CC-TGATGC-AAT
** * * * * * **
17248 CCGTTCCACTGTAA-TCTCAGGGAAATAGGATTGC-TGGCTTCAATCTGCTCTGCTGTAATCTCA
505 CCACTCCACTGTAACT-TCAGAGAAATAAGA-TCCTTGACTTCAATCCGCTCCACTGTAATCTCA
*
17311 GGGAGATAAGATTCACCA
568 GGGAAATAAGATT-ACCA
17329 TTTTTGATTA
Statistics
Matches: 494, Mismatches: 75, Indels: 37
0.82 0.12 0.06
Matches are distributed among these distances:
653 3 0.01
654 26 0.05
655 2 0.00
656 10 0.02
657 409 0.83
658 26 0.05
659 17 0.03
660 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (653 bp):
AGGGAGATAAGATCTGAAATTCCTAGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTATAACTTAAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTATAATCT
CAGGAAAATAGGATTACTAGCTTCAATCTGTTCCGCTCTAATCTCAAGGAGATAAGATTCACCAT
TTTCGATTAGCTCAACAATTTCTTAGAGAGATAAGATATGGAATTCTTAGGTCTATTCCACTGTA
ATCTCAAGCAGATAAGACTAGATGCAATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTA
CTTGAATCCATTCCACTGTAATCTAGGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAA
TCTCAAGGAGATAAGATTCACAATTTCGATTAGCTCCACTATTGCTCAGGGAGATAAGACCTGGA
ATTACGATCTACTCTACTATAATCTTAGAGAGATAAGACCTGATGCAATCCACTCCACTGTAACT
TCAGAGAAATAAGATCCTTGACTTCAATCCGCTCCACTGTAATCTCAGGGAAATAAGATTACCAG
CTTCAATCTGCTCGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTG
CTT
Found at i:17415 original size:832 final size:831
Alignment explanation
Indices: 15811--18854 Score: 3507
Period size: 832 Copynumber: 3.7 Consensus size: 831
15801 ATCTGCTCCG
* * *
15811 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
* * * * * * *
15876 ATTCACCGTCTTCGATCT-GCTCCACTATTGCTCAGGGAGAAAAGATCTGGAACTATTCGGTCTA
66 ATTCACCATTTTCGAT-TAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTA
* *
15940 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTA
130 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATA
* * * *
16005 AGATCCTTTATTTTAATTCGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCAGC
195 AGATCCTTTATTTTAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGC
* * * * * * * *
16070 TCCGCTGTAATCTCAGGGAGATAAGATCTGA-AATTCCTCGGTCTA-TTCCACTATAATCTCAGG
260 TCCGCTCTAATCTCAGGGAGATAAGAT-TCACCATT-TTCGAT-TAGCTCCACTAT-TTCTTAGG
* * * * * * * * *
16133 GAGATAAGACCTG-ATGC---GATCTACTCTACTGTAA-CTTAAGAGAGATAAGATTCTTTATTT
321 GAGATAAGATCTGAATTCTTAGGTCTATTCCACTGTAATCTCAAGAGAGATAAGA--CCTGA-TG
** *** * * * * * ** * *** *
16193 TAATCCGTTCCACTGTAATCTT-AG-GAAAATAGGGTTAC-TGGCTTCAATTTGTTCCGCTGTAA
383 CGATCTACTCTACTGTAA-CTTCAGAG-AGATA-AGATCCTTTACTTTAATCCATTCCACTGTAA
* * * * ** * ** * *
16255 TCTCAAGGAGATAAGATTCACCATTTTCGAT-TAGCTCAACTAT-TTCTTC-GGGAGATATGATA
445 TCTCAGGGAAATAGGATT-ACTAGCTTCAATCT-GCTCCGCTATAATC-TCAGGGAGATAAGAT-
* * * * * *
16317 TGGAATTCTTCGGTCTATTCCACTGTAATCTCAAGCAGATAAGACTAGATGCAATCTACTCTACT
506 TGAAATTCTTCGATCTATTCCACTATAATCTCAGGGAGATAAGACTAGATACAATCTACTCTACT
* * *
16382 GTAACTTCAGAGAGATAATATCCTTTATTTTAATCTGTTCCACTGTAATCT-AGGGGAAATAGGA
571 GTAACTTAAGAGAGATAAGATCCTTTATTCTAATCTGTTCCACTGTAATCTCA-GGGAAATAGGA
* ** *
16446 TTACTAGCTTCAATCTGCTCCGCTATAATCTCAATGAGATAAGATTCACCAATTTCGATTAGCTC
635 TTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCAATTTTGATTAGCTC
* * * * *
16511 CACTATTGCTTATGGAGATAAGATCTGGAATTCTTCGGTGTATTCTACTATAATCTTAGGGAGAT
700 CACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGAT
*
16576 AAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTC
765 AAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTC
16641 CA
830 CA
* * *
16643 CTGTAATCTCATGGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
*
16708 ATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGAAATTCTTAGGTCTAT
66 ATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTAT
* *
16773 TCCAGC-GTAATCTCTGGGAGGTAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATA
131 TCCA-CTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATA
* * * *
16837 AGATCCTTTATTTTAGTTCATTCCACTATAATCTCAGGGAAATAGGATTGCTAGCTTCAATCTGC
195 AGATCCTTTATTTTAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGC
* * * * * *
16902 TTCGTTCTAATCTCAGAGAGATAAGATTCACCATTTTCGATTAGCTCTACAATTTCTTAGAGAGA
260 TCCGCTCTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGA
16967 TAAGATCTGGAATT-TCTAGGTCTATTCCACTGTAATCTCAAG-GAGATAAGACCTGATGCGATC
325 TAAGATCT-GAATTCT-TAGGTCTATTCCACTGTAATCTCAAGAGAGATAAGACCTGATGCGATC
* *
17030 TACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTGAATCCATTCCACTGTAATCTCAGGG
388 TACTCTACTGTAACTTCAGAGAGATAAGATCCTTTACTTTAATCCATTCCACTGTAATCTCAGGG
* * * *
17095 TAATAGGATTACTAGCTTTAACCTGCTCCGCTATAATCTCAGGGAGATAAGATCTGAAATTCTTT
453 AAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGAT-TGAAATTCTTC
*
17160 GATCTATTCCACTATAATCTCAGGGAGATAAGACCT-GATACGATCTACTCTACTGTAACTTAAG
517 GATCTATTCCACTATAATCTCAGGGAGATAAGA-CTAGATACAATCTACTCTACTGTAACTTAAG
* * *
17224 AGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTGCTGGCTTC
581 AGAGATAAGATCCTTTATTCTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTC
* *
17289 AATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTTTTGATTAGCTCCACTATTGCTT
646 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCAATTTTGATTAGCTCCACTATTGCTT
* * *
17354 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTCAGACCTGATG
711 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* * **
17419 CGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATATGTTCCA
776 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCA
* * *
17475 CTGTAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGAGAAG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
*
17540 ATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCA-GTCTA
66 ATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTT-AGGTCTA
* * *
17604 TTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGCGATA
130 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATA
* * *
17669 AGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTAC
195 AGATCCTTTATTTTAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGC
*
17734 TCTGC-CGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAG
260 TCCGCTC-TAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAG
* * *
17798 ATAAGATCTGGAATTCTTAGGTCTATTCCAGC-GTAATCTC-TGGGAGGTAAGACCTGATGCGAT
324 ATAAGATCT-GAATTCTTAGGTCTATTCCA-CTGTAATCTCAAGAGAGATAAGACCTGATGCGAT
* * *
17861 CTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCACTGTAATCTCAGG
387 CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTACTTTAATCCATTCCACTGTAATCTCAGG
* * * * * *
17926 GAAATAGGATTGCTAGCTTCAATCTGCTTCGTTCTAATCTCAGGGAGATAAGATTCACCATT-TT
452 GAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATTGA-AATTCTT
* * * * * * * * *
17990 CGAT-TAGCTCCACTAT-TTCTTAGAGAGATAAGATCTGGAATTCCTAAGTCTATTCCACTCTAA
516 CGATCTA-TTCCACTATAATCTCAGGGAGATAAGA-CTAG-A-TAC-AA-TCTACTCTACTGTAA
* * * * ** * * *
18053 TCTCAAG-GAGATAAGA-CC-TGATGC-GATCTACTCTACTGTAA-CTTCAGAGAGATA--ATAT
575 -CTTAAGAGAGATAAGATCCTTTATTCTAATCTGTTCCACTGTAATC-TCAGGGAAATAGGAT-T
* * * * * * * ** * *
18111 CCTTTA-CTTGAATCCGTTCCACTGTAATCTCAGGGTA-ATAGGATT-ACTAGCTTTAACCT-GC
637 AC--TAGCTTCAATCTGCTCCGCTGTAATCTCAGGG-AGATAAGATTCACCAATTTTGA-TTAGC
* * ** * *
18172 TCCGCTATAAT-CTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGA
698 TCCACTAT--TGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGG
* * *
18236 AGGTAAAACTTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCT
761 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC-
18301 C-TTCCA
825 CGTTCCA
* * *
18307 CTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
*
18372 ATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTAT
66 ATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTAT
* * *
18437 TCCACTGGAATCTCAGGGAGTTCAGACCTGATGCGATCTACTCTAC-AGTAACTTCAGAGAGATA
131 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTA-TAACTTCAGAGAGATA
* *
18501 AAATCCTTTATTTTAATAT-GTTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTG
195 AGATCCTTTATTTTAAT-TCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTG
* * * *
18565 CTCCGCTGTAATCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCTACTATTGCTTAGGGAG
259 CTCCGCTCTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAG
18630 ATAAGATCTGAATTTCTTCA-GTCTATTCCACTGTAATCTC-AGAGAGATAAGACCTGATGCGAT
324 ATAAGATCTGAA-TTCTT-AGGTCTATTCCACTGTAATCTCAAGAGAGATAAGACCTGATGCGAT
* * * *
18693 CTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTTTAATCTCAGG
387 CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTACTTTAATCCATTCCACTGTAATCTCAGG
* * * ** * *
18758 GAAATAGGATTATTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATT-TT
452 GAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATTGA-AATTCTT
* * *
18822 CGAT-TAGCTCCACTAT-TTCTTAGGGAGATAAGA
516 CGATCTA-TTCCACTATAATCTCAGGGAGATAAGA
18855 TCTGGAATTC
Statistics
Matches: 1915, Mismatches: 248, Indels: 98
0.85 0.11 0.04
Matches are distributed among these distances:
830 38 0.02
831 77 0.04
832 1722 0.90
833 21 0.01
834 3 0.00
835 44 0.02
836 10 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (831 bp):
CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
ATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTAT
TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAA
GATCCTTTATTTTAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCT
CCGCTCTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGAT
AAGATCTGAATTCTTAGGTCTATTCCACTGTAATCTCAAGAGAGATAAGACCTGATGCGATCTAC
TCTACTGTAACTTCAGAGAGATAAGATCCTTTACTTTAATCCATTCCACTGTAATCTCAGGGAAA
TAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATTGAAATTCTTCGATC
TATTCCACTATAATCTCAGGGAGATAAGACTAGATACAATCTACTCTACTGTAACTTAAGAGAGA
TAAGATCCTTTATTCTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCT
GCTCCGCTGTAATCTCAGGGAGATAAGATTCACCAATTTTGATTAGCTCCACTATTGCTTAGGGA
GATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATC
TACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCA
Found at i:17700 original size:394 final size:393
Alignment explanation
Indices: 16741--17717 Score: 945
Period size: 394 Copynumber: 2.5 Consensus size: 393
16731 ACTATTGCTT
* * * * * * *
16741 AGGGAGATAAGATCTGAAATTCTTAGGTCTATTCCAGCGTA-ATCTCTGGGAGGTAAGACCTGAT
1 AGGGAGAGAAGATCTCAAATTCTTCGATCTACTCCA-C-TATATCTCAGGGAGATAAGACCTGAT
* * * * * * ** * * * *
16805 GCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAGTTCATTCCACTATAATC
64 ACCATCTACTCCACTGTAACTTAAGAGAGATAAGATCCTTGATGCTAATCCACTCCACTGTAATC
* * * * * ** * *
16870 TCAGGGAAATAGGATTGCT-AGCTTCAATCTGCTTCGTTCTAATCTCAGAGAGATAAGATTCACC
129 TCAGAGAAATAAGATTCCTGA-CTTCAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTCACC
* *
16934 ATTTTCGATTAGCTCTACAATTTCTTAGAGAGATAAGATCTGGAATTTCTAGGTCTATTCCACTG
193 ATTTTCGATTAGCTCCACAATTGCTTAGAGAGATAAGATCTGGAATTTCTAGGTCTATTCCACTG
* * *
16999 TAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTT
258 GAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTT
* * * *
17064 TACTTGAATCCATTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTAT
323 TACTTGAATACATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTAT
17129 AATCTC
388 AATCTC
* * * *
17135 AGGGAGATAAGATCTGAAATTCTTTGATCTATTCCACTATAATCTCAGGGAGATAAGACCTGATA
1 AGGGAGAGAAGATCTCAAATTCTTCGATCTACTCCACTAT-ATCTCAGGGAGATAAGACCTGATA
* * * * **
17200 CGATCTACTCTACTGTAACTTAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAATCT
65 CCATCTACTCCACTGTAACTTAAGAGAGATAAGATCCTTGATGCTAATCCACTCCACTGTAATCT
* * * * * **
17265 CAGGGAAATAGGATTGCTGGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCAT
130 CAGAGAAATAAGATTCCTGACTTCAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTCACCAT
* * * *
17330 TTTTGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAA-TTCTTCGGTCTATTCCACTGG
195 TTTCGATTAGCTCCACAATTGCTTAGAGAGATAAGATCTGGAATTTC-TAGGTCTATTCCACTGG
* * *
17394 AATCTCAGGGAGTTCAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTT
259 AATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTT
* * ** * * *
17459 ATTTTAATATGTTCCACTGTAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTA
324 ACTTGAATACATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATA
*
17524 ATCTT
389 ATCTC
* * *
17529 AGGGAGAGAAGAT-TCACCATT-TTCGAT-TAGCTCCACTAT-TGCTTAGGGAGATAAGATCTGG
1 AGGGAGAGAAGATCTCA-AATTCTTCGATCTA-CTCCACTATAT-CTCAGGGAGATAAGACCT-G
* * * * * *
17590 ATTTCTTCAGTCTATTCCACTGTAA-TCTCAGAGAGATAAGA-CC-TGATGC-GATCTACTCTAC
62 A-TAC--CA-TCTACTCCACTGTAACT-TAAGAGAGATAAGATCCTTGATGCTAATCCACTCCAC
** * * * * * *
17651 TGTAA-CTTCAGAGCGATAAGA-TCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAG
122 TGTAATC-TCAGAGAAATAAGATTCC-TGACTTCAATCCGCTCCACTGTAATCTCAGGGAGATAA
17714 GATT
185 GATT
17718 ACTGGCTTCA
Statistics
Matches: 492, Mismatches: 76, Indels: 30
0.82 0.13 0.05
Matches are distributed among these distances:
391 1 0.00
392 20 0.04
393 24 0.05
394 413 0.84
395 4 0.01
396 4 0.01
397 26 0.05
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (393 bp):
AGGGAGAGAAGATCTCAAATTCTTCGATCTACTCCACTATATCTCAGGGAGATAAGACCTGATAC
CATCTACTCCACTGTAACTTAAGAGAGATAAGATCCTTGATGCTAATCCACTCCACTGTAATCTC
AGAGAAATAAGATTCCTGACTTCAATCCGCTCCACTGTAATCTCAGGGAGATAAGATTCACCATT
TTCGATTAGCTCCACAATTGCTTAGAGAGATAAGATCTGGAATTTCTAGGTCTATTCCACTGGAA
TCTCAAGGAGATAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTAC
TTGAATACATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAAT
CTC
Found at i:17919 original size:613 final size:605
Alignment explanation
Indices: 16689--18549 Score: 1778
Period size: 613 Copynumber: 3.0 Consensus size: 605
16679 CTGCTCTGCC
*
16689 GTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGAT
1 GTAATCTCAGGGAAATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGAT
* * *
16754 CTGAAATTCTTAGGTCTATTCCAGC-GTAATCTCTGGGAGGTAAGACCTGATGCGATCTACTCTA
66 CTGAAATTCTTCGGTCTATTCCA-CTG-AATCTCAGGGAGATAAGACCTGATGCGATCTACTCTA
* *
16818 CTATAACTTCAGAGAGATAAGATCCTTTATTTTAGTTCATTCCACTATAATCTCAGGGAAATAGG
129 C-ATAACTTCAGAGAGATAAGATCCTTTATTTTAATT-ATTCCACTGTAATCTCAGGGAAATAGG
* * * * *
16883 ATTGCTAGCTTCAATCTGCTTCGTTCTAATCTCAGAGAGATAAGATTCACCATTTTCGATTAGCT
192 ATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCT
* * *
16948 CTACAATTTCTTAGAGAGATAAGATCTGGAATTTC-T-AGGTCTATTCCACTGTAATCTCAAGGA
257 CCACTA-TTCTTAGGGAGATAAGATCTGG-ATTTCTTCA-GTCTATTCCACTGTAATCTCAA-GA
* * *
17011 GATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTGAATCCA
318 GATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCC-
* * * * * *
17076 TTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTATAATCTCAGGGAG
382 TTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTACTCTGCTGTAATCTCAGGGAG
* * * * * * * *
17141 ATAAGATCTGA-AATTCTTTGATCTA-TTCCACTATAATCTCAGGGAGATAAGACCT-G-ATAC-
447 ATAAGAT-TCACCATT-TTCGAT-TAGCTCCACTAT-TTCTTAGGGAGATAAGATCTGGAATTCT
* * * * * * * *** * *
17201 -GATCTACTCTACTGTAA-CT-TAAGAGAGATAAGATCCTTTATTCTAATCCGTTCCACTGTAA-
508 TGGTCTATTCCACTGTAATCTCT--GGGAGATAAGA-CC-TGATGC-GATCTACTCTACTATAAC
* * * * *** * **
17262 TCTCAGGGAAATAGGATTGC-TGGCTTCAA-TCTGCTCTGCT
568 T-TCAGAGAGATAAGA-TCCTTTATTTTAATTCT--TCCACT
* *
17302 GTAATCTCAGGGAGATAAGATTCACCATTTTTGATTAGCTCCACTATTGCTTAGGGAGATAAGAT
1 GTAATCTCAGGGAAATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGAT
* * *
17367 CTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTCAGACCTGATGCGATCTACTCTAC
66 CTGAAATTCTTCGGTCTATTCCACT-GAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
* * *
17432 AGTAACTTCAGAGAGATAAAATCCTTTATTTTAATATGTTCCACTGTAATCTAAGGGAAATAGGA
130 A-TAACTTCAGAGAGATAAGATCCTTTATTTTAAT-TATTCCACTGTAATCTCAGGGAAATAGGA
* * *
17497 TTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGAGAAGATTCACCATTTTCGATTAGCTC
193 TTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTC
17562 CACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATCTCAGAGAGAT
258 CACTATT-CTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATCTCA-AGAGAT
*
17627 AAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTC
321 AAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCC-TTC
* *
17692 CACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTACTCTGCCGTAATCTCAGGGAGATA
385 CACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTACTCTGCTGTAATCTCAGGGAGATA
17757 AGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGATCTGGAATTCTTAGGTCT
450 AGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGATCTGGAATTCTT-GGTCT
*
17822 ATTCCAGC-GTAATCTCTGGGAGGTAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGA
514 ATTCCA-CTGTAATCTCTGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGA
17886 TAAGATCCTTTATTTTAATTCATTCCACT
578 TAAGATCCTTTATTTTAATTC-TTCCACT
* * * ** * ** * *
17915 GTAATCTCAGGGAAATAGGATT-GCTAGCTTCAATCT-GCTTCGTTCTAAT-CTCAGGGAGATAA
1 GTAATCTCAGGGAAATAAGATTCACCATTTTCGAT-TAGC-TC-CACTATTGCTTAGGGAGATAA
* * * * * * * * * *
17977 GAT-TCACCATT-TTCGAT-TAGCTCCACT-ATTTCTTAGAGAGATAAGATCTGGAATTCCTAAG
63 GATCTGA-AATTCTTCGGTCTA-TTCCACTGA-ATCTCAGGGAGATAAGACCT-G-A-TGC-GA-
* * * * *** * *
18038 TCTATTCCACTCTAA-TCTCA-AGGAGATAAGA-CC-TGA-TGCGATCTACTCTACTGTAA-CTT
120 TCTACTCTAC-ATAACT-TCAGA-GAGATAAGATCCTTTATTTTAAT-TATTCCACTGTAATC-T
* * * * * * * *
18097 CAGAGAGATA--ATATCCTTTA-CTTGAATCCGTTCCACTGTAATCTCAGGGTA-ATAGGATT-A
180 CAGGGAAATAGGAT-TAC--TAGCTTCAATCTGCTCCGCTGTAATCTCAGGG-AGATAAGATTCA
* * * * * * ** * *
18157 CTAGCTTT-AACCT-GCTCCGCTATAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTC
241 CCA-TTTTCGA-TTAGCTCCACTAT--TCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTC
* * *
18220 CACTGTAATCTCAAGAAGGTAAAACTTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGA
302 CACTGTAATCTCAAG-AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGA
*
18285 TCCTTTATTTTAATCTCTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTTCTCT
366 TCCTTTATTTTAATC-CTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTACTCT
*
18350 GCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAA
430 GCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAA
* * * *
18415 GATCTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTCAGACCTGATGCGATCTACTC
495 GATCTGGAATTCTT-GGTCTATTCCACTGTAATCTCTGGGAGATAAGACCTGATGCGATCTACTC
* *
18480 TAC-AGTAACTTCAGAGAGATAAAATCCTTTATTTTAATATGTTCCACT
559 TACTA-TAACTTCAGAGAGATAAGATCCTTTATTTTAAT-TCTTCCACT
* *
18528 GTAATCTAAGGGAAATAGGATT
1 GTAATCTCAGGGAAATAAGATT
18550 ACTAGCTTCA
Statistics
Matches: 1057, Mismatches: 141, Indels: 100
0.81 0.11 0.08
Matches are distributed among these distances:
610 1 0.00
611 37 0.04
612 68 0.06
613 872 0.82
614 24 0.02
615 8 0.01
616 43 0.04
617 3 0.00
618 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (605 bp):
GTAATCTCAGGGAAATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGAT
CTGAAATTCTTCGGTCTATTCCACTGAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACA
TAACTTCAGAGAGATAAGATCCTTTATTTTAATTATTCCACTGTAATCTCAGGGAAATAGGATTA
CTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCAC
TATTCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATCTCAAGAGATAAGAC
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCTTCCACTGT
AATCTCAGGGAAATAGGATTACTAGCTTCAATCTACTCTGCTGTAATCTCAGGGAGATAAGATTC
ACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGATCTGGAATTCTTGGTCTATTCCAC
TGTAATCTCTGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCC
TTTATTTTAATTCTTCCACT
Found at i:18220 original size:175 final size:175
Alignment explanation
Indices: 18014--18373 Score: 533
Period size: 175 Copynumber: 2.1 Consensus size: 175
18004 ATTTCTTAGA
** * *
18014 GAGATAAGATCTGGAATTCCTAAGTCTATTCCACTCTAATCTCAAGGAGATAAGACCTGATGCGA
1 GAGATAAGATCTAAAATTCCTAAGTCTATTCCACTCTAATCTCAAGAAGATAAAACCTGATGCGA
*
18079 TCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTGAATC-CGTTCCACTGTAATCTCA
66 TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTACTTGAATCTC-TTCCACTGTAATCTCA
* *
18143 GGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTATAATCTCAGG
130 GGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTCAGG
* ** * * *
18189 GAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGAAGGTAAAACTTGATGCGA
1 GAGATAAGATCTAAAATTCCTAAGTCTATTCCACTCTAATCTCAAGAAGATAAAACCTGATGCGA
* *
18254 TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCTTCCACTGTAATCTCAG
66 TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTACTTGAATCTCTTCCACTGTAATCTCAG
* * * *
18319 GGAAATAGGATTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGG
131 GGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTCAGG
18364 GAGATAAGAT
1 GAGATAAGAT
18374 TCACCATTTT
Statistics
Matches: 165, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
175 164 0.99
176 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.32
Consensus pattern (175 bp):
GAGATAAGATCTAAAATTCCTAAGTCTATTCCACTCTAATCTCAAGAAGATAAAACCTGATGCGA
TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTACTTGAATCTCTTCCACTGTAATCTCAG
GGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTCAGG
Found at i:18279 original size:394 final size:394
Alignment explanation
Indices: 17792--18592 Score: 1239
Period size: 394 Copynumber: 2.0 Consensus size: 394
17782 ACTATTTCTT
** ** * *
17792 AGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCAGCGTAATCTCTGGGAGGTAAGACCTGATG
1 AGGGAGATAAGATCTAAAATTCTTAGGTCTATTCCAGCGTAATCTCAAGAAGGTAAAACCTGATG
17857 CGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAAT-TCATTCCACTGTAATC
66 CGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCTC-TTCCACTGTAATC
* *
17921 TCAGGGAAATAGGATTGCTAGCTTCAATCTGCT-TCGTTCTAATCTCAGGGAGATAAGATTCACC
130 TCAGGGAAATAGGATTACTAGCTTCAATCTGCTCT-GCTCTAATCTCAGGGAGATAAGATTCACC
*
17985 ATTTTCGATTAGCTCCACTATTTCTTAGAGAGATAAGATCTGGAATTCCTAAGTCTATTCCACTC
194 ATTTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCTAAGTCTATTCCACTC
* * *
18050 TAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTT
259 GAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTT
* * * *
18115 TACTTGAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTAT
324 TACTTGAATACGTTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTAT
18180 AATCTC
389 AATCTC
* *
18186 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCA-CTGTAATCTCAAGAAGGTAAAACTTGAT
1 AGGGAGATAAGATCTAAAATTCTTAGGTCTATTCCAGC-GTAATCTCAAGAAGGTAAAACCTGAT
*
18250 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCTTCCACTGTAATC
65 GCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCTTCCACTGTAATC
* *
18315 TCAGGGAAATAGGATTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGGGAGATAAGATTCACCA
130 TCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTCTAATCTCAGGGAGATAAGATTCACCA
* * ** *
18380 TTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGG
195 TTTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCTAAGTCTATTCCACTCG
* * *
18445 AATCTCAGGGAGTTCAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTT
260 AATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTT
* * * * *
18510 ATTTTAATATGTTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTA
325 ACTTGAATACGTTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATA
18575 ATCTC
390 ATCTC
*
18580 AGGGAGAGAAGAT
1 AGGGAGATAAGAT
18593 TCACCATTTT
Statistics
Matches: 369, Mismatches: 35, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
393 1 0.00
394 365 0.99
395 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (394 bp):
AGGGAGATAAGATCTAAAATTCTTAGGTCTATTCCAGCGTAATCTCAAGAAGGTAAAACCTGATG
CGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCTTCCACTGTAATCT
CAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTCTAATCTCAGGGAGATAAGATTCACCAT
TTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCTAAGTCTATTCCACTCGA
ATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTA
CTTGAATACGTTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAA
TCTC
Found at i:18312 original size:219 final size:217
Alignment explanation
Indices: 18186--19249 Score: 1464
Period size: 219 Copynumber: 4.9 Consensus size: 217
18176 CTATAATCTC
** * * * *
18186 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGAAGGTAAAACTTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATG
18251 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTC-TTCCACTGTAATC
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCGTTCCACTGTAAT-
*
18315 TCAGGGAAATAGGATTACTAGCTTCAATCT-TCTCTGCTGTAATCTCAGGGAGATAAGATTCACC
130 TCAGGGAAATAGGATT-CTAGCTTCAATCTGT-TCCGCTGTAATCTCAGGGAGATAAGATTCACC
18379 ATTTTCGATTAGCTCCACTATTGCTT
193 ATTTTCGATTAGCTCCACTATT-CTT
* * * *
18405 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTCAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATG
* * *
18470 CGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATAT-GTTCCACTGTAATC
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCGTTCCACTGTAAT-
* * *
18534 TAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATTCACCA
130 TCAGGGAAATAGGATT-CTAGCTTCAATCTGTTCCGCTGTAATCTCAGGGAGATAAGATTCACCA
*
18599 TTTTCGATTAGCTCTACTATTGCTT
194 TTTTCGATTAGCTCCACTATT-CTT
*
18624 AGGGAGATAAGATCT-GAATTTCTTCAGTCTATTCCACTGTAATCTC-AGAGAGATAAGACCTGA
1 AGGGAGATAAGATCTGGAA-TTCTTCGGTCTATTCCACTGTAATCTCAAG-GAGATAAGACCTGA
* *
18687 TGCGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATC-CGTTCCACTTTAA
64 TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCGTTCCACTGTAA
* * * * *
18751 TCTCAGGGAAATAGGATTATTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCAC
129 T-TCAGGGAAATAGGATT-CTAGCTTCAATCTGTTCCGCTGTAATCTCAGGGAGATAAGATTCAC
18816 CATTTTCGATTAGCTCCACTATTTCTT
192 CATTTTCGATTAGCTCCACTA-TTCTT
* ** *
18843 AGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCAGCT-TAATCTCTGGGAGGTAAGACCTGAT
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCA-CTGTAATCTCAAGGAGATAAGACCTGAT
* * *
18907 GTGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAAT-TCATTCCACTGTAAT
65 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCGTTCCACTGTAAT
* * *
18971 CTTAGGGAAATAGGATTGCTAGCTTCAATCTGCTT-CGTTCTAATCTCAGGGAGATAAGATTCAC
130 -TCAGGGAAATAGGATT-CTAGCTTCAATCTG-TTCCGCTGTAATCTCAGGGAGATAAGATTCAC
19035 CATTTTCGATTAGCTCCACTATTTCTT
192 CATTTTCGATTAGCTCCACTA-TTCTT
* * *
19062 AGAGAGATAAGATCTGGAATTCCTAGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATG
* * *
19127 CGATCCACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTTAATC-CGTTCCACTGTAATC
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCGTTCCACTGTAAT-
* * * * *
19191 TCAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTATAATCTCAGGGAGATAAGAT
130 TCAGGGAAATAGGATT-CTAGCTTCAATCTGTTCCGCTGTAATCTCAGGGAGATAAGAT
19250 CTAAAATTCT
Statistics
Matches: 760, Mismatches: 71, Indels: 28
0.88 0.08 0.03
Matches are distributed among these distances:
218 7 0.01
219 744 0.98
220 9 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (217 bp):
AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATG
CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCGTTCCACTGTAATT
CAGGGAAATAGGATTCTAGCTTCAATCTGTTCCGCTGTAATCTCAGGGAGATAAGATTCACCATT
TTCGATTAGCTCCACTATTCTT
Found at i:18411 original size:438 final size:435
Alignment explanation
Indices: 17525--18855 Score: 1017
Period size: 438 Copynumber: 3.0 Consensus size: 435
17515 TCCGCTGTAA
* *
17525 TCTTAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGG
1 TCTTAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGATCTGG
* * *
17590 ATTTCTTCAGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTA
66 AATTCCTAAGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTA
* * * *
17655 ACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTAC
131 ACTTCAGAGAGATAATATCCTTTACTTCAATCCGTTCCACTGTAATCTCAGGG-AATAGGATTAC
* * * ** ** * *
17720 TGGCTTCAATCTACTCTGCCGTAATCTCAGGGAGATAAGAT-TCACCATT-TTCGAT-TAGCTCC
195 TAGCTTTAA-CTGCTCTGCTATAATCTCAGGGAGATAAGATCT-AAAATTCTTCGGTCTA-TTCC
* * * * * * * * * * * * *
17782 ACTAT-TTCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCAGC-GTAA-TCTCTGGGAG
257 ACTGTAATCTCAAGAAGATAA-AACTTG-ATGC---GATCTACTCTA-CTGTAACT-TCAGAGAG
* * *** * * * * * *
17844 GTAAGA-CC-TGA-TGCGATCTAC-TCTACTATAA-CTTCAGAGAGATAAGATCCT-TTA-TTTT
315 ATAAGATCCTTTATTTTAATCT-CTTCCACTATAATC-TCAGGGAAATAGGAT--TATTAGCTTC
* * * * * ** * ** *
17902 AATTCATTC-C-ACTGTAATCTCAGGGAAATAGGATT-GCTAGCTTCAATCT-GCTTCGTTCTAA
376 AA-TC-TTCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TAGC-TC-CACTAT
* *
17963 TCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGAGAGATAAGATCTGG
1 TCTTAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGATCTGG
*
18028 AATTCCTAAGTCTATTCCACTCTAATCTCA-AGGAGATAAGACCTGATGCGATCTACTCTACTGT
66 AATTCCTAAGTCTATTCCACTGTAATCTCAGA-GAGATAAGACCTGATGCGATCTACTCTACTGT
*
18092 AACTTCAGAGAGATAATATCCTTTACTTGAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTA
130 AACTTCAGAGAGATAATATCCTTTACTTCAATCCGTTCCACTGTAATCTCAGGG-AATAGGATTA
*
18157 CTAGCTTTAACCTGCTCCGCTATAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCA
194 CTAGCTTTAA-CTGCTCTGCTATAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCA
*
18222 CTGTAATCTCAAGAAGGTAAAACTTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
258 CTGTAATCTCAAGAAGATAAAACTTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
18287 CTTTATTTTAATCTCTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTTCTCTGC
323 CTTTATTTTAATCTCTTCCACTATAATCTCAGGGAAATAGGATTATTAGCTTCAATCTTCTCTGC
18352 TGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTAT
388 TGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTAT
* * * * * * *
18400 TGCTTAGGGAGATAAGATCTGGA--ATTCTTCGGTCTA-TTCCACTGGA-ATCTCAGGGAGTTCA
1 T-CTTAGGGAGATAAGAT-T-CACCATT-TTCGAT-TAGCTCCACT--ATTTCTTAGGGAGATAA
* * * * * * * * *** *
18461 GACCT-G-A-TGC-GA-TCTACTCTACAGTAA-CTTCAGAGAGATAAAATCCTTTATTTTAATAT
59 GATCTGGAATTCCTAAGTCTATTCCACTGTAATC-TCAGAGAGATAAGA-CC-TGA-TGCGATCT
** * * *** * * *
18520 GTTCCACTGTAA--TCTA-AGGGA-AATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCA
120 ACTCTACTGTAACTTC-AGAGAGATAATATCCTT--TA-CTTCAATCCGTTCCACTGTAATCTCA
* * * * * * * * * *
18581 GGGAGAGAAGATTCACCA-TTTTCGATTAGCTCTACTAT--TGCTTAGGGAGATAAGATCTGAAT
181 GGGA-ATAGGATT-ACTAGCTTT-AACT-GCTCTGCTATAAT-CTCAGGGAGATAAGATCTAAAA
* * *
18643 TTCTTCAGTCTATTCCACTGTAATCTC-AGAGAGATAAGACCTGATGCGATCTACTCTACTGTAA
241 TTCTTCGGTCTATTCCACTGTAATCTCAAGA-AGATAAAACTTGATGCGATCTACTCTACTGTAA
* *
18707 CTTCAGAGCGATAAGATCCTTTATTTTAATC-CGTTCCACTTTAATCTCAGGGAAATAGGATTAT
305 CTTCAGAGAGATAAGATCCTTTATTTTAATCTC-TTCCACTATAATCTCAGGGAAATAGGATTAT
* * *
18771 TGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACT
369 TAGCTTCAATCTTCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACT
18836 ATT
434 A-T
18839 TCTTAGGGAGATAAGAT
1 TCTTAGGGAGATAAGAT
18856 CTGGAATTCT
Statistics
Matches: 735, Mismatches: 116, Indels: 84
0.79 0.12 0.09
Matches are distributed among these distances:
434 2 0.00
435 51 0.07
436 17 0.02
437 26 0.04
438 555 0.76
439 54 0.07
440 29 0.04
441 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (435 bp):
TCTTAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGATCTGG
AATTCCTAAGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTA
ACTTCAGAGAGATAATATCCTTTACTTCAATCCGTTCCACTGTAATCTCAGGGAATAGGATTACT
AGCTTTAACTGCTCTGCTATAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTG
TAATCTCAAGAAGATAAAACTTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
TATTTTAATCTCTTCCACTATAATCTCAGGGAAATAGGATTATTAGCTTCAATCTTCTCTGCTGT
AATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTAT
Found at i:18557 original size:613 final size:613
Alignment explanation
Indices: 17573--18811 Score: 1970
Period size: 613 Copynumber: 2.0 Consensus size: 613
17563 ACTATTGCTT
** * *
17573 AGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATG
1 AGGGAGATAAGATCTAAAATTCTTCAGTCTATTCCACTGTAATCTCAGAGAGATAAAACCTGATG
*
17638 CGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
*
17703 CAGGGAAATAGGATTACTGGCTTCAATCTACTCTGCCGTAATCTCAGGGAGATAAGATTCACCAT
131 CAGGGAAATAGGATTACTAGCTTCAATCTACTCTGCCGTAATCTCAGGGAGATAAGATTCACCAT
* *
17768 TTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCAGCGTA
196 TTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCAGCGGA
* *
17833 ATCTCTGGGAGGTAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTA
261 ATCTCAGGGAGGTAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAAATCCTTTA
* * * *
17898 TTTTAATTCATTCCACTGTAATCTCAGGGAAATAGGATTGCTAGCTTCAATCTGCTTCGTTCTAA
326 TTTTAATTCATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTCTAA
* *
17963 TCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGAGAGATAAGATCTGG
391 TCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCT-G
18028 AA-TTCCTAAGTCTATTCCACTCTAATCTCA-AGGAGATAAGACCTGATGCGATCTACTCTACTG
455 AATTTCCTAAGTCTATTCCACTCTAATCTCAGA-GAGATAAGACCTGATGCGATCTACTCTACTG
* *
18091 TAACTTCAGAGAGATAATATCCTTTACTTGAATCCGTTCCACTGTAATCTCAGGGTAATAGGATT
519 TAACTTCAGAGAGATAAGATCCTTTACTTGAATCCGTTCCACTGTAATCTCAGGGAAATAGGATT
* *
18156 ACTAGCTTTAACCTGCTCCGCTATAATCTC
584 ACTAGCTTCAACCTGCTCCGCCATAATCTC
* * *
18186 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCA-AGAAGGTAAAACTTGAT
1 AGGGAGATAAGATCTAAAATTCTTCAGTCTATTCCACTGTAATCTCAGAG-AGATAAAACCTGAT
18250 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTC-TTCCACTGTAAT
65 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC-CGTTCCACTGTAAT
* *
18314 CTCAGGGAAATAGGATTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGGGAGATAAGATTCACC
129 CTCAGGGAAATAGGATTACTAGCTTCAATCTACTCTGCCGTAATCTCAGGGAGATAAGATTCACC
*
18379 ATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCA-CT
194 ATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCAGC-
* *
18443 GGAATCTCAGGGAGTTCAGACCTGATGCGATCTACTCTAC-AGTAACTTCAGAGAGATAAAATCC
258 GGAATCTCAGGGAGGTAAGACCTGATGCGATCTACTCTACTA-TAACTTCAGAGAGATAAAATCC
*
18507 TTTATTTTAATAT-GTTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGC
322 TTTATTTTAAT-TCATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGC
* * *
18571 TGTAATCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCTACTATTGCTTAGGGAGATAAGA
386 TCTAATCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGA
* * *
18636 TCTGAATTTCTTCAGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTA
451 TCTGAATTTCCTAAGTCTATTCCACTCTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTA
* * * *
18701 CTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTTTAATCTCAGGGAAATAGG
516 CTGTAACTTCAGAGAGATAAGATCCTTTACTTGAATCCGTTCCACTGTAATCTCAGGGAAATAGG
* * * * *
18766 ATTATTGGCTTCAATCTGCTCTGCCGTAATCTC
581 ATTACTAGCTTCAACCTGCTCCGCCATAATCTC
18799 AGGGAGATAAGAT
1 AGGGAGATAAGAT
18812 TCACCATTTT
Statistics
Matches: 575, Mismatches: 44, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
612 7 0.01
613 565 0.98
614 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (613 bp):
AGGGAGATAAGATCTAAAATTCTTCAGTCTATTCCACTGTAATCTCAGAGAGATAAAACCTGATG
CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
CAGGGAAATAGGATTACTAGCTTCAATCTACTCTGCCGTAATCTCAGGGAGATAAGATTCACCAT
TTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCAGCGGA
ATCTCAGGGAGGTAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAAATCCTTTA
TTTTAATTCATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTCTAA
TCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGA
ATTTCCTAAGTCTATTCCACTCTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTA
ACTTCAGAGAGATAAGATCCTTTACTTGAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTAC
TAGCTTCAACCTGCTCCGCCATAATCTC
Found at i:18858 original size:832 final size:828
Alignment explanation
Indices: 16524--19503 Score: 3461
Period size: 832 Copynumber: 3.6 Consensus size: 828
16514 TATTGCTTAT
* * * * * * *
16524 GGAGATAAGATCTGGAATTCTTCGGTGTATTCTACTATAATCTTAGGGAGATAAGACCTGATGCG
1 GGAGATAAGATCTAGAATTCTTCGGTCTATTCCACTATAATCTCAAGAAGATAAAACCTGATGCG
* *
16589 ATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCA
66 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCA
* * *
16654 TGGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTT
131 GGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTT
*
16719 TCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGAAATTCTTAGGTCTATTCCAGC-GTAA
196 TCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCA-CTGTAA
*
16783 TCTCTGGGAGGTAAGACCTGATGCGATCTACTCTACTA-TAACTTCAGAGAGATAAGATCCTTTA
260 TCTCAGGGAGGTAAGACCTGATGCGATCTACTCTAC-AGTAACTTCAGAGAGATAAGATCCTTTA
* * * * * * *
16847 TTTTAGT-TCATTCCACTATAATCTCAGGGAAATAGGATTGCTAGCTTCAATCTGCTTCGTTCTA
324 TTTTAATCT-GTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTA
* * * * *
16911 ATCTCAGAGAGATAAGATTCACCATTTTCGATTAGCTCTACAATTTCTTAGAGAGATAAGATCTG
388 ATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTG
16976 GAATT-TCTAGGTCTATTCCACTGTAATCTCA-AGGAGATAAGACCTGATGCGATCTACTCTACT
453 GAATTCT-TAGGTCTATTCCACTGTAATCTCAGA-GAGATAAGACCTGATGCGATCTACTCTACT
* * * *
17039 GTAACTTCAGAGAGATAATATCCTTTACTTGAATCCATTCCACTGTAATCTCAGGGTAATAGGAT
516 GTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCAGGGAAATAGGAT
* * * * * * * *
17104 TACTAGCTTTAACCTGCTCCGCTATAATCTCAGGGAGATAAGATCTGA-AATTCTTTGATCTA-T
581 TACTAGCTTCAATCTGCTCTGC-CTAATCTCAGGGAGATAAGAT-TCACCATT-TTCGAT-TAGC
* * * * * * * *
17167 TCCACTATAATCTCAGGGAGATAAGACCT-G-A-TAC-GA-TCTACTCTACTGTAA-CTTAAGAG
642 TCCACTAT-TTCTTAGGGAGATAAGATCTGGAATTCCTAAGTCTATTCCACT-TAATCTCAAG-G
* * * *** * * * * **
17226 AGATAAGATCCTTTATTCTAATCCGTTCCACTGTAA-TCTCAGGGAAATAGGAT-TGC-TGGCTT
704 AGATAAGA-CC-TGATGC-GATCTACTCTACTGTAACT-TCAGAGAGATA--ATATCCTTTACTT
* * ** * * ** * * *
17288 CAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTTTTGATTAGCTCCACTAT--TG
763 CAATCCGTTCCACTGTAATCTCAGGGA-ATAGGATT-ACTAGCTTTAACT-GCTCCGCTATAAT-
*
17351 CTTAG
824 CTCAG
* ** * * * * *
17356 GGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAGTTCAGACCTGATGCG
1 GGAGATAAGATCTAGAATTCTTCGGTCTATTCCACTATAATCTCAAGAAGATAAAACCTGATGCG
* * *** *
17421 ATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATATGTTCCACTGTAATCTAA
66 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCA
* * * *
17486 GGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGAGAAGATTCACCATTT
131 GGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTT
* * *
17551 TCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAAT
196 TCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAAT
* * * *
17616 CTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATT
261 CTCAGGGAGGTAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAGATCCTTTATT
* * * * *
17681 TTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTACTCTGCCGTAATC
326 TTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATC
*
17746 TCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGATCTGGAA
391 TCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAA
* * * *
17811 TTCTTAGGTCTATTCCAGC-GTAATCTCTGGGAGGTAAGACCTGATGCGATCTACTCTACTATAA
456 TTCTTAGGTCTATTCCA-CTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAA
* *
17875 CTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCACTGTAATCTCAGGGAAATAGGATTGCT
520 CTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCAGGGAAATAGGATTACT
*
17940 AGCTTCAATCTGCT-TCGTTCTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACT
585 AGCTTCAATCTGCTCT-G-CCTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACT
*
18004 ATTTCTTAGAGAGATAAGATCTGGAATTCCTAAGTCTATTCCACTCTAATCTCAAGGAGATAAGA
648 ATTTCTTAGGGAGATAAGATCTGGAATTCCTAAGTCTATTCCACT-TAATCTCAAGGAGATAAGA
*
18069 CCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTGAATCCGTTCCACT
712 CCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTCAATCCGTTCCACT
18134 GTAATCTCAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTATAATCTCAG
777 GTAATCTCAGGG-AATAGGATTACTAGCTTTAA-CTGCTCCGCTATAATCTCAG
* * * *
18188 GGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGAAGGTAAAACTTGATGCG
1 GGAGATAAGATCTAGAATTCTTCGGTCTATTCCACTATAATCTCAAGAAGATAAAACCTGATGCG
18253 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTC-TTCCACTGTAATCTC
66 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC-CATTCCACTGTAATCTC
*
18317 AGGGAAATAGGATTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATT
130 AGGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATT
* *
18382 TTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGGAA
195 TTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAA
* * *
18447 TCTCAGGGAGTTCAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTAT
260 TCTCAGGGAGGTAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAGATCCTTTAT
* *
18512 TTTAATATGTTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTAAT
325 TTTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTAAT
* *
18577 CTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCTACTATTGCTTAGGGAGATAAGATCT-GA
390 CTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGA
18641 ATTTCTTCA-GTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGT
455 A-TTCTT-AGGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGT
* * *
18705 AACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTTTAATCTCAGGGAAATAGGATTA
518 AACTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCAGGGAAATAGGATTA
* *
18770 TTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCAC
583 CTAGCTTCAATCTGCTCTGCC-TAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCAC
* * ** *
18835 TATTTCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCAGCTTAATCTCTGGGAGGTAAG
647 TATTTCTTAGGGAGATAAGATCTGGAATTCCTAAGTCTATTCCA-CTTAATCTCAAGGAGATAAG
* * * * * * *
18900 ACCTGATGTGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCAC
711 ACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTCAATCCGTTCCAC
* * * * * *
18965 TGTAATCTTAGGGAAATAGGATTGCTAGCTTCAATCTGCTTCGTTCTAATCTCAG
776 TGTAATCTCAGGG-AATAGGATTACTAGCTTTAA-CTGCTCCGCTATAATCTCAG
** * * * * * *
19020 GGAGATAAGAT-TCACCATT-TTCGAT-TAGCTCCACTAT-TTCT-TAGAGAGATAAGATCTGGA
1 GGAGATAAGATCT-AGAATTCTTCGGTCTA-TTCCACTATAATCTCAAGA-AGATAAAACCT-G-
* * * * * *** * *
19080 ATTCCTAGGTCTATTCCACTGTAA-TCTCA-AGGAGATAAGA-CC-TGA-TGCGATCCACTCTAC
61 A-TGC--GATCTACTCTACTGTAACT-TCAGA-GAGATAAGATCCTTTATTTTAATCCATTCCAC
* * * * * * **
19140 TGTAA-CTTCAGAGAGATA--ATATCCTTTA-CTTTAATCCGTTCCACTGTAATCTCAGGGTA-A
121 TGTAATC-TCAGGGAAATAGGAT-TAC--TAGCTTCAATCTGCTCTGCTGTAATCTCAGGG-AGA
* * * * * * * *
19200 TAGGATT-ACTAGCTTT-AACCT-GCTCCGCTATAAT-CTCAGGGAGATAAGATCTAAAATTCTT
181 TAAGATTCACCA-TTTTCGA-TTAGCTCCACTAT--TGCTTAGGGAGATAAGATCTGAAATTCTT
* * * * *
19261 CGGTCTATTCCACTGTAATCTCAAGAAGGTAAAACTTGATGCGATCTACTCTACTGTAACTTCAG
242 CGGTCTATTCCACTGTAATCTCAGGGAGGTAAGACCTGATGCGATCTACTCTACAGTAACTTCAG
*
19326 AGAGATAAGATCCTTTATTTTAATCTCTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTC
307 AGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTC
* *
19391 AATCTTCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
372 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
* *
19456 AGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGGAATCTCAG
437 AGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCACTGTAATCTCAG
19504 GGTGTGACAG
Statistics
Matches: 1871, Mismatches: 225, Indels: 104
0.85 0.10 0.05
Matches are distributed among these distances:
829 3 0.00
830 34 0.02
831 71 0.04
832 1678 0.90
833 26 0.01
834 7 0.00
835 47 0.03
836 5 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (828 bp):
GGAGATAAGATCTAGAATTCTTCGGTCTATTCCACTATAATCTCAAGAAGATAAAACCTGATGCG
ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCA
GGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTT
TCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAAT
CTCAGGGAGGTAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAGATCCTTTATT
TTAATCTGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATC
TCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAA
TTCTTAGGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAAC
TTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCAGGGAAATAGGATTACTA
GCTTCAATCTGCTCTGCCTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATT
TCTTAGGGAGATAAGATCTGGAATTCCTAAGTCTATTCCACTTAATCTCAAGGAGATAAGACCTG
ATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTCAATCCGTTCCACTGTAA
TCTCAGGGAATAGGATTACTAGCTTTAACTGCTCCGCTATAATCTCAG
Found at i:18904 original size:438 final size:436
Alignment explanation
Indices: 18186--19249 Score: 1652
Period size: 438 Copynumber: 2.4 Consensus size: 436
18176 CTATAATCTC
* * * * *
18186 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGAAGGTAAAACTTGATG
1 AGGGAGATAAGATCT-GAATTCTTCAGTCTATTCCACTGTAATCTCAAG-AGATAAGACCTGATG
18251 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTC-TTCCACTGTAATC
64 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC-CGTTCCACTGTAATC
*
18315 TCAGGGAAATAGGATTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGGGAGATAAGATTCACCA
128 TCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCA
*
18380 TTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGG
193 TTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCACTGG
* *
18445 AATCTCAGGGAGTTCAGACCTGATGCGATCTACTCTAC-AGTAACTTCAGAGAGATAAAATCCTT
258 AATCTCAGGGAGGTAAGACCTGATGCGATCTACTCTACTA-TAACTTCAGAGAGATAAAATCCTT
* *
18509 TATTTTAATAT-GTTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTG
322 TATTTTAAT-TCATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTC
*
18573 TAATCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCTACTATTGCTT
386 TAATCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
18624 AGGGAGATAAGATCTGAATTTCTTCAGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGAA-TTCTTCAGTCTATTCCACTGTAATCTCA-AGAGATAAGACCTGATG
* *
18689 CGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTTTAATCT
64 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* * *
18754 CAGGGAAATAGGATTATTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCAT
129 CAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCAT
* *
18819 TTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCAGCT-T
194 TTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCA-CTGG
* * *
18883 AATCTCTGGGAGGTAAGACCTGATGTGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTT
258 AATCTCAGGGAGGTAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAAATCCTTT
* * * *
18948 ATTTTAATTCATTCCACTGTAATCTTAGGGAAATAGGATTGCTAGCTTCAATCTGCTTCGTTCTA
323 ATTTTAATTCATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTCTA
* *
19013 ATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTT
388 ATCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
* *
19062 AGAGAGATAAGATCTGGAATTCCT-AGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGAT
1 AGGGAGATAAGATCT-GAATTCTTCA-GTCTATTCCACTGTAATCTCAA-GAGATAAGACCTGAT
* * *
19126 GCGATCCACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTTAATCCGTTCCACTGTAATC
63 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATC
* * * * *
19191 TCAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTATAATCTCAGGGAGATAAGAT
128 TCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGAT
19250 CTAAAATTCT
Statistics
Matches: 574, Mismatches: 43, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
437 6 0.01
438 560 0.98
439 8 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (436 bp):
AGGGAGATAAGATCTGAATTCTTCAGTCTATTCCACTGTAATCTCAAGAGATAAGACCTGATGCG
ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCA
GGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTT
TCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCACTGGAAT
CTCAGGGAGGTAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAAATCCTTTATT
TTAATTCATTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTCTAATC
TCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
Found at i:18970 original size:613 final size:609
Alignment explanation
Indices: 17649--19494 Score: 1785
Period size: 613 Copynumber: 3.0 Consensus size: 609
17639 GATCTACTCT
* * * * *
17649 ACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATC-CGTTCCACTGTAATCTCAGGGAAATA
1 ACTGTAACTTCAGAGAGATAAGATCCTTGATTGTAATCTC-TTCCACTATAATCTCAGAGAAATA
* * * * *
17713 GGATTACTGGCTTCAATCTACTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAG
65 AGATTACTAGCTTCAATCTTCTCTACTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAG
* *
17778 CTCCACTATTTCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCAGC-GTAATCTCTGGG
130 CTCCACTA-TTCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCA-CTG-AATCTCAGGG
*
17842 AGGTAAGACCTGATGCGATCTACTCTACTA-TAACTTCAGAGAGATAAGATCCTTTATTTTAATT
192 AGATAAGACCTGATGCGATCTACTCTAC-AGTAACTTCAGAGAGATAAGATCCTTTATTTTAATT
* * * *
17906 CATTCCACTGTAATCTCAGGGAAATAGGATTGCTAGCTTCAATCTGCTTCGTTCTAATCTCAGGG
256 -ATTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGG
* * *
17971 AGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGAGAGATAAGATCTGGAATTCCTA
320 AGATAAGATTCACCATTTTCGATTAGCTCCACTA-TTCTTAGGGAGATAAGATCT-GAATTCTTC
*
18036 AGTCTATTCCACTCTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
383 AGTCTATTCCACTGTAATCTCAA-GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
* * * * *
18101 GAGATAATATCCTTTACTTGAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTA
447 GAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCA
* * * ** * * * *
18166 ACCTGCTCCGCTATAATCTCAGGGAGATAAGA-TCTAAAATTCTTCGGTCTA-TTCCACTGTAAT
512 ATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTC-ACCATT-TTCGAT-TAGCTCCACTAT-TT
* * * * * * * * * *
18229 CTCAAGAAGGTAA-AACTTG-ATGC--GATCTACTCT
573 CTTAGGGAGATAAGATCTGGAATTCTTGGTCTATTCC
* * * * *
18262 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCTTCCACTGTAATCTCAGGGAAATAG
1 ACTGTAACTTCAGAGAGATAAGATCCTTGATTGTAATCTCTTCCACTATAATCTCAGAGAAATAA
*
18327 GATTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGC
66 GATTACTAGCTTCAATCTTCTCTACTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGC
18392 TCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGGAATCTCAGGGAG
131 TCCACTATT-CTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACT-GAATCTCAGGGAG
* * * *
18457 TTCAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATATGT
194 ATAAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAGATCCTTTATTTTAAT-TAT
*
18522 TCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
258 TCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* *
18587 GAAGATTCACCATTTTCGATTAGCTCTACTATTGCTTAGGGAGATAAGATCTGAATTTCTTCAGT
323 TAAGATTCACCATTTTCGATTAGCTCCACTATT-CTTAGGGAGATAAGATCTGAA-TTCTTCAGT
*
18652 CTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGCG
386 CTATTCCACTGTAATCTCA-AGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
* * *
18717 ATAAGATCCTTTATTTTAATCCGTTCCACTTTAATCTCAGGGAAATAGGATTATTGGCTTCAATC
450 ATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATC
*
18782 TGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGG
515 TGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGG
18847 AGATAAGATCTGGAATTCTTAGGTCTATTCC
580 AGATAAGATCTGGAATTCTT-GGTCTATTCC
* * * * * *
18878 AGCT-TAA-TCTCTGGGAGGTAAGA-CC-TGA-TGTGATCTAC-TCTACTATAA-CTTCAGAGAG
1 A-CTGTAACT-TCAGAGAGATAAGATCCTTGATTGTAATCT-CTTCCACTATAATC-TCAGAGAA
* * * * * * * * **
18936 ATAAGATCCT-TTA-TTTTAATTCATTC-C-ACTGTAATCTTAGGGAAATAGGATT-GCTAGCTT
62 ATAAGAT--TACTAGCTTCAA-TC-TTCTCTACTGTAATCTCAGGGAGATAAGATTCACCATTTT
* ** * * * * *
18996 CAATCT-GCTTCGTTCTAATCTCAGGGAGATAAGAT-T-CACCATT-TTCGAT-TAGCTCCACT-
123 CGAT-TAGC-TC-CACTATTCTTAGGGAGATAAGATCTGGA--ATTCTTCGGTCTA-TTCCACTG
* * * * * * * * *
19055 ATTTCTTAGAGAGATAAGATCTGGAATTCCTAGGTCTATTCCACTGTAA-TCTCA-AGGAGATAA
182 A-ATCTCAGGGAGATAAGACCT-G-A-TGC--GATCTACTCTACAGTAACT-TCAGA-GAGATAA
* *** * * * * * * *
19118 GA-CC-TGA-TGCGATCCACTCTACTGTAA-CTTCAGAGAGATA--ATATCCTTTA-CTTTAATC
239 GATCCTTTATTTTAAT-TATTCCACTGTAATC-TCAGGGAAATAGGAT-TAC--TAGCTTCAATC
* * * * * * * * * *
19176 CGTTCCACTGTAATCTCAGGGTA-ATAGGATT-ACTAGCTTT-AACCT-GCTCCGCTATAATCTC
299 TGCTCCGCTGTAATCTCAGGG-AGATAAGATTCACCA-TTTTCGA-TTAGCTCCACTAT--TCTT
* * * * *
19237 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGAAGGTAAAACTTGATG
359 AGGGAGATAAGATCT-GAATTCTTCAGTCTATTCCACTGTAATCTCAAG-AGATAAGACCTGATG
19302 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTC-TTCCACTGTAATC
422 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC-CGTTCCACTGTAATC
*
19366 TCAGGGAAATAGGATTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGGGAGATAAGATTCACCA
486 TCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCA
*
19431 TTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCC
551 TTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGATCTGGAATTCTT-GGTCTATTCC
19491 ACTG
1 ACTG
19495 GAATCTCAGG
Statistics
Matches: 1051, Mismatches: 131, Indels: 102
0.82 0.10 0.08
Matches are distributed among these distances:
610 1 0.00
611 31 0.03
612 67 0.06
613 864 0.82
614 29 0.03
615 11 0.01
616 46 0.04
617 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (609 bp):
ACTGTAACTTCAGAGAGATAAGATCCTTGATTGTAATCTCTTCCACTATAATCTCAGAGAAATAA
GATTACTAGCTTCAATCTTCTCTACTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGC
TCCACTATTCTTAGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGAATCTCAGGGAGAT
AAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTATTCC
ACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAA
GATTCACCATTTTCGATTAGCTCCACTATTCTTAGGGAGATAAGATCTGAATTCTTCAGTCTATT
CCACTGTAATCTCAAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGA
TCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCT
GCTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAA
GATCTGGAATTCTTGGTCTATTCC
Found at i:19270 original size:175 final size:175
Alignment explanation
Indices: 19065--19424 Score: 551
Period size: 175 Copynumber: 2.1 Consensus size: 175
19055 ATTTCTTAGA
** * *
19065 GAGATAAGATCTGGAATTCCTAGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATGCGA
1 GAGATAAGATCTAAAATTCCTAGGTCTATTCCACTGTAATCTCAAGAAGATAAAACCTGATGCGA
*
19130 TCCACTCTACTGTAACTTCAGAGAGATAATATCCTTTACTTTAATC-CGTTCCACTGTAATCTCA
66 TCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTACTTTAATCTC-TTCCACTGTAATCTCA
* *
19194 GGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTATAATCTCAGG
130 GGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTCAGG
* * * *
19240 GAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGAAGGTAAAACTTGATGCGA
1 GAGATAAGATCTAAAATTCCTAGGTCTATTCCACTGTAATCTCAAGAAGATAAAACCTGATGCGA
* *
19305 TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCTTCCACTGTAATCTCAG
66 TCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTACTTTAATCTCTTCCACTGTAATCTCAG
* * * *
19370 GGAAATAGGATTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGG
131 GGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTCAGG
19415 GAGATAAGAT
1 GAGATAAGAT
19425 TCACCATTTT
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
175 166 0.99
176 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (175 bp):
GAGATAAGATCTAAAATTCCTAGGTCTATTCCACTGTAATCTCAAGAAGATAAAACCTGATGCGA
TCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTACTTTAATCTCTTCCACTGTAATCTCAG
GGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTCAGG
Found at i:19368 original size:85 final size:85
Alignment explanation
Indices: 19093--19368 Score: 209
Period size: 87 Copynumber: 3.2 Consensus size: 85
19083 CCTAGGTCTA
* * * * *
19093 TTCCACTGTAATCTCAAGGAGATAAGACCTGATGCGATCCACTCTACTGTAACTTCAGAGAGATA
1 TTCCACTGTAATCTCAAGAAGGTAAAACTTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
* *
19158 ATATCCTTTACTTTAATC-C
66 AGATCCTTTATTTTAATCTC
* ** * * *** * * ** * *
19177 GTTCCACTGTAATCTCAGGGTAATAGG-ATTACTAGCTTTAACCTGCTCCGCTATAA-TCTCAGG
1 -TTCCACTGTAATCTCA-AG--A-AGGTAAAACTTGATGCGATCTACTCTACTGTAACT-TCAGA
** ** *
19240 GAGATAAGAT-CTAAAATTCTTCGGTCTA
60 GAGATAAGATCCT-TTATT-TT-AATCTC
19268 TTCCACTGTAATCTCAAGAAGGTAAAACTTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1 TTCCACTGTAATCTCAAGAAGGTAAAACTTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
19333 AGATCCTTTATTTTAATCTC
66 AGATCCTTTATTTTAATCTC
19353 TTCCACTGTAATCTCA
1 TTCCACTGTAATCTCA
19369 GGGAAATAGG
Statistics
Matches: 135, Mismatches: 44, Indels: 24
0.67 0.22 0.12
Matches are distributed among these distances:
85 35 0.26
86 6 0.04
87 38 0.28
88 33 0.24
89 5 0.04
90 18 0.13
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (85 bp):
TTCCACTGTAATCTCAAGAAGGTAAAACTTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCCTTTATTTTAATCTC
Found at i:21580 original size:40 final size:40
Alignment explanation
Indices: 21525--21756 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
21515 ATTTGAATAC
*
21525 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
21565 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
21607 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
21647 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
21687 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTAGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
21727 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
21757 TTGTGGTTAT
Statistics
Matches: 178, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 138 0.78
42 40 0.22
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:21662 original size:82 final size:81
Alignment explanation
Indices: 21517--21756 Score: 383
Period size: 82 Copynumber: 3.0 Consensus size: 81
21507 GCATGAGCAT
* *
21517 TTGAATACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCG
1 TTGAATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCG
* *
21582 AAGGCATTTGTGCGAG
66 AAGGCAATTGTGCAAG
21598 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCC
1 TTGA-ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCC
21663 GAAGGCAATTGTGCAAG
65 GAAGGCAATTGTGCAAG
* * * * *
21680 TTG-ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTAGCTATACCCGGGTTAAGACCCG
1 TTGAATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCG
21744 AAGGCAATTGTGC
66 AAGGCAATTGTGC
21757 TTGTGGTTAT
Statistics
Matches: 149, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
80 69 0.46
81 4 0.03
82 76 0.51
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (81 bp):
TTGAATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCG
AAGGCAATTGTGCAAG
Done.