Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold502

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6397
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30


Found at i:364 original size:27 final size:26

Alignment explanation


    Indices: 292--391  Score: 138
    Period size: 26  Copynumber: 4.0  Consensus size: 26

        282 TGGTACAAAT

                                      
        292 TGATAATGG-TTAGGTAAA----CCA
          1 TGATAATGGTTTAGGTAAATGTTCCA

                     *          *     
        313 TGATAATGGATTAGGTAAATATTCCA
          1 TGATAATGGTTTAGGTAAATGTTCCA

                                       
        339 TGATAATGGGTTTAGGTAAATGTTCCA
          1 TGATAAT-GGTTTAGGTAAATGTTCCA

                                      
        366 TGATAATGGTTTAGGTAAATGTTCCA
          1 TGATAATGGTTTAGGTAAATGTTCCA

        392 GATGGGATTT


Statistics
Matches: 71,  Mismatches: 2, Indels: 7
        0.89            0.03        0.09

Matches are distributed among these distances:
  21    9  0.13
  22    9  0.13
  26   29  0.41
  27   24  0.34

ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35


Consensus pattern (26 bp):   
TGATAATGGTTTAGGTAAATGTTCCA
Done.