Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 1 of 325
Found at i:18 original size:7 final size:7
Alignment explanation
Indices: 1--7872 Score: 13813
Period size: 7 Copynumber: 1130.1 Consensus size: 7
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1 CCTAAAC
4343 CCTAAAC
1 CCTAAAC
4350 CCTAAAC
1 CCTAAAC
4357 CCTAAAC
1 CCTAAAC
4364 CCTAAA-
1 CCTAAAC
4370 CCTAAAC
1 CCTAAAC
4377 CCTAAAC
1 CCTAAAC
4384 CCTAAAC
1 CCTAAAC
4391 CCTAAAC
1 CCTAAAC
4398 CCTAAAC
1 CCTAAAC
4405 CCTAAAC
1 CCTAAAC
4412 CCTAAAC
1 CCTAAAC
4419 CCTAAAC
1 CCTAAAC
4426 CCTAAAC
1 CCTAAAC
4433 CCTAAAC
1 CCTAAAC
4440 CCTAAAC
1 CCTAAAC
4447 CCTAAAAC
1 CCT-AAAC
4455 CCTAAAC
1 CCTAAAC
4462 CCTAAAC
1 CCTAAAC
4469 CCTAAAC
1 CCTAAAC
4476 CCTAAAC
1 CCTAAAC
4483 CCTAAAC
1 CCTAAAC
4490 CCTAAAC
1 CCTAAAC
4497 CCTAAAC
1 CCTAAAC
4504 CCTAAAC
1 CCTAAAC
4511 CCTAAAC
1 CCTAAAC
4518 CCTAAAC
1 CCTAAAC
4525 CCTAAAC
1 CCTAAAC
4532 CCTAAAC
1 CCTAAAC
4539 CCTAAAC
1 CCTAAAC
4546 CCTAAAC
1 CCTAAAC
4553 CCTAAAC
1 CCTAAAC
4560 CCTAAAC
1 CCTAAAC
4567 CCTAAAC
1 CCTAAAC
4574 CCTAAAC
1 CCTAAAC
4581 CCTAAAC
1 CCTAAAC
4588 CCTAAAC
1 CCTAAAC
4595 CCTAAAC
1 CCTAAAC
4602 CCTAAAC
1 CCTAAAC
4609 CCTAAAC
1 CCTAAAC
4616 CCTAAAC
1 CCTAAAC
4623 CCTAAAC
1 CCTAAAC
4630 CCTAAAC
1 CCTAAAC
4637 CCTAAAC
1 CCTAAAC
4644 CCTAAAC
1 CCTAAAC
4651 CCTAAAC
1 CCTAAAC
4658 CCTAAAC
1 CCTAAAC
4665 CCTAAAC
1 CCTAAAC
4672 CCTAAAC
1 CCTAAAC
4679 CCTAAAC
1 CCTAAAC
4686 CCTAAAC
1 CCTAAAC
4693 CCTAAAC
1 CCTAAAC
4700 CCTAAAC
1 CCTAAAC
4707 CCTAAAC
1 CCTAAAC
4714 CCTAAAC
1 CCTAAAC
4721 CCTAAAAC
1 CCT-AAAC
4729 CCTAAAC
1 CCTAAAC
4736 CCTAAAC
1 CCTAAAC
4743 CCTAAAC
1 CCTAAAC
4750 CCTAAAC
1 CCTAAAC
4757 CCTAAAC
1 CCTAAAC
4764 CCTAAAC
1 CCTAAAC
4771 CCTAAAC
1 CCTAAAC
4778 CCTAAAC
1 CCTAAAC
4785 CCTAAAC
1 CCTAAAC
4792 CCTAAAC
1 CCTAAAC
4799 CCTAAAC
1 CCTAAAC
4806 CCTAAAC
1 CCTAAAC
4813 CCTAAAC
1 CCTAAAC
4820 CCTAAAC
1 CCTAAAC
4827 CCTAAAC
1 CCTAAAC
4834 CCTAAAC
1 CCTAAAC
4841 CCTAAAC
1 CCTAAAC
4848 CCTAAAC
1 CCTAAAC
4855 CCTAAAC
1 CCTAAAC
4862 CCT-AAC
1 CCTAAAC
4868 CCTAAAC
1 CCTAAAC
4875 CCTAAAC
1 CCTAAAC
4882 CCTAAAC
1 CCTAAAC
4889 CCTAAAC
1 CCTAAAC
4896 CCTAAAC
1 CCTAAAC
4903 CCTAAAC
1 CCTAAAC
4910 CCTAAAC
1 CCTAAAC
4917 CCTAAAC
1 CCTAAAC
4924 CCTAAAC
1 CCTAAAC
4931 CCTAAAC
1 CCTAAAC
4938 CCTAAAC
1 CCTAAAC
4945 CCTAAAC
1 CCTAAAC
4952 CCTAAAC
1 CCTAAAC
4959 CCTAAAC
1 CCTAAAC
4966 CCTAAAC
1 CCTAAAC
4973 CCTAAAC
1 CCTAAAC
4980 CCTAAAC
1 CCTAAAC
4987 CCTAAAC
1 CCTAAAC
4994 CCTAAAC
1 CCTAAAC
5001 CCTAAAC
1 CCTAAAC
5008 CCTAAAC
1 CCTAAAC
5015 CCTAAAC
1 CCTAAAC
5022 CCTAAAC
1 CCTAAAC
5029 CCT-AAC
1 CCTAAAC
5035 CCTAAAC
1 CCTAAAC
5042 CCTAAAC
1 CCTAAAC
5049 CCTAAAC
1 CCTAAAC
5056 CCTAAAC
1 CCTAAAC
5063 CCTAAAC
1 CCTAAAC
5070 CCTAAAC
1 CCTAAAC
5077 CCTAAAC
1 CCTAAAC
5084 CCTAAAC
1 CCTAAAC
5091 CCTAAAC
1 CCTAAAC
5098 CCTAAAC
1 CCTAAAC
5105 CCTAAAC
1 CCTAAAC
5112 CCTAAAC
1 CCTAAAC
5119 CCTAAAAAC
1 CCT--AAAC
5128 CCTAAAC
1 CCTAAAC
5135 CCTAAAC
1 CCTAAAC
5142 CCTAAAC
1 CCTAAAC
5149 CCTAAAC
1 CCTAAAC
5156 CCTAAAC
1 CCTAAAC
5163 CCTAAAC
1 CCTAAAC
5170 CCTAAAC
1 CCTAAAC
5177 CCTAAACC
1 CCTAAA-C
5185 CTCTAAAC
1 C-CTAAAC
5193 CCTAAAC
1 CCTAAAC
5200 CCTAAAAC
1 CCT-AAAC
5208 CCTAAAC
1 CCTAAAC
5215 CCTAAAC
1 CCTAAAC
5222 CCTAAAC
1 CCTAAAC
5229 CCTAAAC
1 CCTAAAC
5236 CCTAAAC
1 CCTAAAC
5243 CCT-AAC
1 CCTAAAC
5249 CCTAAAC
1 CCTAAAC
5256 CCTAAAC
1 CCTAAAC
5263 CCTAAA-
1 CCTAAAC
** *
5269 -AAAAAA
1 CCTAAAC
*** *
5275 AAAAAAA
1 CCTAAAC
***
5282 AAAAAAC
1 CCTAAAC
5289 CCTAAAC
1 CCTAAAC
5296 CCTAAAC
1 CCTAAAC
5303 CCTAAAC
1 CCTAAAC
5310 CCTAAAC
1 CCTAAAC
5317 CCTAAAC
1 CCTAAAC
5324 CCTAAAC
1 CCTAAAC
5331 CCTAAAC
1 CCTAAAC
5338 CCTAAAC
1 CCTAAAC
5345 CCTAAAC
1 CCTAAAC
5352 CCTAAAC
1 CCTAAAC
5359 CCTAAAC
1 CCTAAAC
5366 CCTAAAC
1 CCTAAAC
5373 CCTAAAC
1 CCTAAAC
5380 CCTAAAC
1 CCTAAAC
5387 CCTAAAC
1 CCTAAAC
5394 CCTAAAC
1 CCTAAAC
5401 CCTAAAC
1 CCTAAAC
5408 CCTAAAC
1 CCTAAAC
5415 CCTAAAC
1 CCTAAAC
5422 CCTAAAC
1 CCTAAAC
5429 CCTAAAC
1 CCTAAAC
5436 CCTAAAC
1 CCTAAAC
5443 CCTAAAC
1 CCTAAAC
5450 CCTAAAC
1 CCTAAAC
5457 CCTAAAC
1 CCTAAAC
5464 CCTAAAC
1 CCTAAAC
5471 CCTAAAC
1 CCTAAAC
5478 CCTAAAC
1 CCTAAAC
5485 CCTAAAC
1 CCTAAAC
5492 CCTAAAC
1 CCTAAAC
5499 CCTAAAC
1 CCTAAAC
5506 CCTAAAC
1 CCTAAAC
5513 CCTAAAC
1 CCTAAAC
5520 CCTAAAC
1 CCTAAAC
5527 CCTAAAC
1 CCTAAAC
5534 CCTAAAC
1 CCTAAAC
5541 CC-AAAC
1 CCTAAAC
5547 CCTAAAC
1 CCTAAAC
5554 CCTAAAC
1 CCTAAAC
5561 CCTAAAC
1 CCTAAAC
5568 CCTAAAC
1 CCTAAAC
5575 CCTAAAC
1 CCTAAAC
5582 CCTAAAC
1 CCTAAAC
5589 CCTAAAC
1 CCTAAAC
5596 CCTAAAC
1 CCTAAAC
5603 CCTAAAC
1 CCTAAAC
5610 CCTAAAC
1 CCTAAAC
5617 CCTAAAAC
1 CCT-AAAC
5625 CCTAAAC
1 CCTAAAC
5632 CCTAAAC
1 CCTAAAC
5639 CCTAAAC
1 CCTAAAC
5646 CCTAAAC
1 CCTAAAC
5653 CCT-AAC
1 CCTAAAC
5659 CCTAAAC
1 CCTAAAC
5666 CCTAAAC
1 CCTAAAC
5673 CCTAAAC
1 CCTAAAC
5680 CCTAAAC
1 CCTAAAC
5687 CCTAAAC
1 CCTAAAC
5694 CCTAAAC
1 CCTAAAC
5701 CCTAAAC
1 CCTAAAC
5708 CCTAAAC
1 CCTAAAC
5715 CCTAAAC
1 CCTAAAC
5722 CCTAAAC
1 CCTAAAC
5729 CCTAAA-
1 CCTAAAC
5735 CCTAAAC
1 CCTAAAC
5742 CCTAAAC
1 CCTAAAC
5749 CCTAAAC
1 CCTAAAC
5756 CCTAAAC
1 CCTAAAC
5763 CCTAAAC
1 CCTAAAC
5770 CCT-AAC
1 CCTAAAC
5776 CC--AAC
1 CCTAAAC
5781 CCTAAAC
1 CCTAAAC
5788 CCTAAAC
1 CCTAAAC
5795 CCTAAAC
1 CCTAAAC
5802 CCTAAAC
1 CCTAAAC
*
5809 CCAAAAC
1 CCTAAAC
5816 CCTAAAC
1 CCTAAAC
5823 CCTAAAC
1 CCTAAAC
5830 CCTAAAC
1 CCTAAAC
5837 CCTAAAC
1 CCTAAAC
5844 CCTAAAC
1 CCTAAAC
5851 CCTAAAC
1 CCTAAAC
5858 CCTAAAC
1 CCTAAAC
5865 CCTAAAC
1 CCTAAAC
5872 CCTAAAC
1 CCTAAAC
5879 CCTAAA-
1 CCTAAAC
5885 CCTAAAC
1 CCTAAAC
5892 CCTAAAC
1 CCTAAAC
5899 CCTAAAC
1 CCTAAAC
5906 CCTAAAC
1 CCTAAAC
5913 CCTAAAC
1 CCTAAAC
5920 CCTAAAC
1 CCTAAAC
5927 CCT-AAC
1 CCTAAAC
*
5933 CCCAAAC
1 CCTAAAC
5940 CCTAAAC
1 CCTAAAC
5947 CCTAAAC
1 CCTAAAC
5954 CCTAAAC
1 CCTAAAC
5961 CCTAAAC
1 CCTAAAC
5968 CCTAAAC
1 CCTAAAC
5975 CCTAAAC
1 CCTAAAC
5982 CCTAAAC
1 CCTAAAC
5989 CCTAAAC
1 CCTAAAC
5996 CCTAAAC
1 CCTAAAC
6003 CCTAAAAC
1 CCT-AAAC
6011 CCTAAAC
1 CCTAAAC
*
6018 CCAAAAC
1 CCTAAAC
6025 CCTAAAC
1 CCTAAAC
6032 CCTAAAC
1 CCTAAAC
6039 CCTAAAC
1 CCTAAAC
6046 CCTAAAC
1 CCTAAAC
6053 CCTAAAC
1 CCTAAAC
6060 CCTAAAC
1 CCTAAAC
6067 CCT-AAC
1 CCTAAAC
6073 CCTAAAC
1 CCTAAAC
6080 CCTAAAC
1 CCTAAAC
6087 CCTAAAC
1 CCTAAAC
6094 CCTAAAC
1 CCTAAAC
6101 CCTAAAC
1 CCTAAAC
6108 CCTAAAC
1 CCTAAAC
6115 CCTAAAC
1 CCTAAAC
6122 CCTAAAC
1 CCTAAAC
6129 CCTAAAC
1 CCTAAAC
6136 CCTAAAC
1 CCTAAAC
6143 CCTAAAC
1 CCTAAAC
6150 CCTAAAC
1 CCTAAAC
6157 CCTAAAC
1 CCTAAAC
6164 CCTAAAC
1 CCTAAAC
6171 CCTAAAC
1 CCTAAAC
6178 CCTAAAC
1 CCTAAAC
6185 CCT-AAC
1 CCTAAAC
6191 CCTAAAC
1 CCTAAAC
6198 CCTAAAAC
1 CCT-AAAC
6206 CCTAAAC
1 CCTAAAC
6213 CCTAAAC
1 CCTAAAC
6220 CCTAAAC
1 CCTAAAC
6227 CCTAAA-
1 CCTAAAC
6233 CCT-AAC
1 CCTAAAC
6239 CCTAAAC
1 CCTAAAC
6246 CCTAAAC
1 CCTAAAC
6253 CCTAAAC
1 CCTAAAC
6260 CCTAAAC
1 CCTAAAC
6267 CCT-AAC
1 CCTAAAC
6273 CCTAAAC
1 CCTAAAC
6280 CCTAAAC
1 CCTAAAC
6287 CCTAAAC
1 CCTAAAC
6294 CCTAAAC
1 CCTAAAC
6301 CCTAAAAC
1 CCT-AAAC
6309 CC-AAAC
1 CCTAAAC
6315 CCTAAAC
1 CCTAAAC
6322 CCTAAAAC
1 CCT-AAAC
*
6330 CCAAAAC
1 CCTAAAC
6337 CCTAAA-
1 CCTAAAC
6343 CCTAAAC
1 CCTAAAC
6350 CCTAAAC
1 CCTAAAC
*
6357 CCTAAAA
1 CCTAAAC
6364 CCTAAAC
1 CCTAAAC
6371 CCTAAAC
1 CCTAAAC
6378 CCTAAAC
1 CCTAAAC
6385 CCTAAAC
1 CCTAAAC
6392 CCTAAAC
1 CCTAAAC
6399 CCTAAAC
1 CCTAAAC
6406 CCTAAAC
1 CCTAAAC
6413 CCTAAAC
1 CCTAAAC
6420 CCTAAAC
1 CCTAAAC
6427 CCTAAAC
1 CCTAAAC
6434 CCTAAAC
1 CCTAAAC
6441 CCTAAAC
1 CCTAAAC
6448 CCTAAAC
1 CCTAAAC
6455 CCTAAAC
1 CCTAAAC
6462 CCTAAA-
1 CCTAAAC
6468 CCTAAAC
1 CCTAAAC
6475 CCTAAAC
1 CCTAAAC
6482 CCTAAAC
1 CCTAAAC
6489 CCTAAAC
1 CCTAAAC
6496 CCTAAAC
1 CCTAAAC
6503 CCTAAAC
1 CCTAAAC
6510 CCTAAAC
1 CCTAAAC
6517 CCTAAAC
1 CCTAAAC
*
6524 CCCAAAC
1 CCTAAAC
6531 CCTAAAC
1 CCTAAAC
6538 CCTAAAC
1 CCTAAAC
6545 CCTAAAC
1 CCTAAAC
6552 CC-AAAC
1 CCTAAAC
6558 CC-AAAC
1 CCTAAAC
6564 CC-AAAC
1 CCTAAAC
6570 CCTAAAC
1 CCTAAAC
6577 CCTAAAC
1 CCTAAAC
6584 CC-AAAC
1 CCTAAAC
6590 CCTAAAC
1 CCTAAAC
6597 CCTAAAC
1 CCTAAAC
6604 CC-AAAC
1 CCTAAAC
6610 CC-AAAC
1 CCTAAAC
6616 CC-AAAC
1 CCTAAAC
*
6622 CCCAAAC
1 CCTAAAC
*
6629 CCAAAAC
1 CCTAAAC
*
6636 CCCAAAC
1 CCTAAAC
6643 CCTAAAC
1 CCTAAAC
*
6650 CCCAAAC
1 CCTAAAC
6657 CC-AAAC
1 CCTAAAC
6663 CC-AAAC
1 CCTAAAC
6669 CC-AAAC
1 CCTAAAC
6675 CC-AAAC
1 CCTAAAC
6681 CC-AAAC
1 CCTAAAC
*
6687 CCCAAAC
1 CCTAAAC
6694 CC-AAAC
1 CCTAAAC
*
6700 CCCAAACC
1 CCTAAA-C
*
6708 CCCAAAC
1 CCTAAAC
6715 CC-AAAC
1 CCTAAAC
6721 CC-AAAC
1 CCTAAAC
6727 CC-AAAC
1 CCTAAAC
6733 CC-AAAC
1 CCTAAAC
*
6739 CCCAAAC
1 CCTAAAC
*
6746 CCCAAAC
1 CCTAAAC
6753 CC-AAAC
1 CCTAAAC
*
6759 CCCAAAC
1 CCTAAAC
6766 CC-AAAC
1 CCTAAAC
*
6772 CCCAAAC
1 CCTAAAC
6779 CC-AAAC
1 CCTAAAC
6785 CC-AAAC
1 CCTAAAC
6791 CC-AAAC
1 CCTAAAC
6797 CC-AAAC
1 CCTAAAC
6803 CC-AAAC
1 CCTAAAC
6809 CCTAAAC
1 CCTAAAC
6816 CCTAAAC
1 CCTAAAC
6823 CCTAAAC
1 CCTAAAC
6830 CCT-AAC
1 CCTAAAC
6836 CCTAAAC
1 CCTAAAC
6843 CCTAAAC
1 CCTAAAC
6850 CCTAAAC
1 CCTAAAC
6857 CCTAAAC
1 CCTAAAC
6864 CCTAAAC
1 CCTAAAC
6871 CCTAAA-
1 CCTAAAC
6877 CCTAAAC
1 CCTAAAC
6884 CCTAAAC
1 CCTAAAC
6891 CCTAAAC
1 CCTAAAC
6898 CCTAAAC
1 CCTAAAC
6905 CCTAAAC
1 CCTAAAC
6912 CCTAAAC
1 CCTAAAC
6919 CCTAAAC
1 CCTAAAC
6926 CCTAAAC
1 CCTAAAC
6933 CCTAAAC
1 CCTAAAC
6940 CCTAAAC
1 CCTAAAC
6947 CCTAAAC
1 CCTAAAC
6954 CCT--AC
1 CCTAAAC
6959 CCTAAAC
1 CCTAAAC
6966 CCTAAAC
1 CCTAAAC
6973 CCTAAAC
1 CCTAAAC
6980 CCTAAAC
1 CCTAAAC
6987 CCTAAAC
1 CCTAAAC
6994 CCTAAAC
1 CCTAAAC
7001 CCTAAAC
1 CCTAAAC
7008 CCTAAAC
1 CCTAAAC
7015 CCTAAAC
1 CCTAAAC
7022 CC-AAAC
1 CCTAAAC
7028 CCTAAAC
1 CCTAAAC
7035 CCTAAAC
1 CCTAAAC
7042 CCTAAAC
1 CCTAAAC
7049 CCTAAAC
1 CCTAAAC
7056 CCTAAAC
1 CCTAAAC
7063 CCTAAAC
1 CCTAAAC
7070 CCTAAAC
1 CCTAAAC
7077 CCTAAAC
1 CCTAAAC
7084 CCTAAAC
1 CCTAAAC
7091 CCTAAAC
1 CCTAAAC
*
7098 CCTAAAA
1 CCTAAAC
7105 CCTAAAAC
1 CCT-AAAC
7113 CCTAAAC
1 CCTAAAC
7120 CCTAAAC
1 CCTAAAC
7127 CCTAAAAAAC
1 CCT---AAAC
7137 CCTAAAC
1 CCTAAAC
7144 CCTAAAC
1 CCTAAAC
7151 CCTAAAC
1 CCTAAAC
7158 CCTAAAC
1 CCTAAAC
7165 CCT-AAC
1 CCTAAAC
7171 CCTAAAAC
1 CCT-AAAC
7179 CCTAAAAC
1 CCT-AAAC
7187 CCTAAAC
1 CCTAAAC
7194 CCTAAAC
1 CCTAAAC
7201 CCTAAAC
1 CCTAAAC
7208 CCTAAAC
1 CCTAAAC
7215 CCTAAAC
1 CCTAAAC
7222 CCTAAAC
1 CCTAAAC
7229 CCTAAAC
1 CCTAAAC
7236 CCTAAAC
1 CCTAAAC
7243 CCTAAAC
1 CCTAAAC
7250 CCTAAAC
1 CCTAAAC
7257 CCTAAAC
1 CCTAAAC
7264 CCTAAAC
1 CCTAAAC
7271 CCTAAAC
1 CCTAAAC
7278 CCTAAAC
1 CCTAAAC
7285 CCTAAAC
1 CCTAAAC
7292 CCTAAAC
1 CCTAAAC
7299 CCTAAAC
1 CCTAAAC
7306 CCTAAAC
1 CCTAAAC
7313 CCTAAAC
1 CCTAAAC
7320 CCTAAAC
1 CCTAAAC
7327 CCTAAAC
1 CCTAAAC
7334 CCTAGAAC
1 CCTA-AAC
7342 CCTAGAAC
1 CCTA-AAC
7350 CCTAAAC
1 CCTAAAC
7357 CCTAGAAC
1 CCTA-AAC
7365 CCTAGAAC
1 CCTA-AAC
7373 CCTAAAC
1 CCTAAAC
7380 CCTAGAAC
1 CCTA-AAC
7388 CCTAGAAC
1 CCTA-AAC
7396 CCTAGAAC
1 CCTA-AAC
7404 CCTAGAAC
1 CCTA-AAC
7412 CCTAGAAC
1 CCTA-AAC
7420 CCTAAAC
1 CCTAAAC
7427 CCTAAAC
1 CCTAAAC
7434 CCTAAAC
1 CCTAAAC
7441 CCT-AAC
1 CCTAAAC
7447 CCT-AAC
1 CCTAAAC
*
7453 CCTGAAC
1 CCTAAAC
*
7460 CCTGAAC
1 CCTAAAC
*
7467 CCTGAAC
1 CCTAAAC
*
7474 CCTAGAC
1 CCTAAAC
*
7481 CCTGAAC
1 CCTAAAC
7488 CCTAAAC
1 CCTAAAC
*
7495 CCTGAAC
1 CCTAAAC
*
7502 CCTGAAC
1 CCTAAAC
7509 CCTAAAAC
1 CCT-AAAC
*
7517 CCTGAAC
1 CCTAAAC
7524 CCTAAAAC
1 CCT-AAAC
*
7532 CCCAAAC
1 CCTAAAC
*
7539 CCTGAAC
1 CCTAAAC
*
7546 CCTGAAC
1 CCTAAAC
*
7553 CCTGAAC
1 CCTAAAC
*
7560 CCTGAAC
1 CCTAAAC
*
7567 CCTGAAC
1 CCTAAAC
*
7574 CCTGAAC
1 CCTAAAC
*
7581 CCTGAAC
1 CCTAAAC
*
7588 CCTGAAC
1 CCTAAAC
7595 CCTGAAAC
1 CCT-AAAC
7603 CCTAAAAC
1 CCT-AAAC
*
7611 CATAAAAC
1 CCT-AAAC
7619 CCTAAAC
1 CCTAAAC
7626 CCTAAAC
1 CCTAAAC
7633 CCTAAAC
1 CCTAAAC
*
7640 CC-GAAC
1 CCTAAAC
**
7646 CCCGAAC
1 CCTAAAC
*
7653 CCCAAAC
1 CCTAAAC
*
7660 CC-GAAC
1 CCTAAAC
7666 CC-AAATC
1 CCTAAA-C
*
7673 CTTAAAC
1 CCTAAAC
*
7680 CCCAAAC
1 CCTAAAC
*
7687 CC-CAAC
1 CCTAAAC
7693 CC-AAAC
1 CCTAAAC
*
7699 CC-AACC
1 CCTAAAC
*
7705 CCCAAAC
1 CCTAAAC
7712 CC--AAC
1 CCTAAAC
*
7717 CC-CAAC
1 CCTAAAC
*
7723 CC-CAAC
1 CCTAAAC
7729 CC--AAC
1 CCTAAAC
**
7734 CCCCAAC
1 CCTAAAC
*
7741 CC-CAAC
1 CCTAAAC
*
7747 CCCAAAC
1 CCTAAAC
7754 CCTAAAC
1 CCTAAAC
7761 CCTAAAC
1 CCTAAAC
7768 CCTAAAC
1 CCTAAAC
7775 CCTAAAC
1 CCTAAAC
7782 CCTAAAC
1 CCTAAAC
7789 CCTAAAAC
1 CCT-AAAC
7797 CCTAAAAC
1 CCT-AAAC
**
7805 CCCGAAC
1 CCTAAAC
**
7812 CCCGAAC
1 CCTAAAC
**
7819 CCCGAAC
1 CCTAAAC
*
7826 CC-GAAC
1 CCTAAAC
**
7832 CCCGAAC
1 CCTAAAC
*
7839 CC-GAAC
1 CCTAAAC
7845 CCT-AAC
1 CCTAAAC
7851 CCTAAAC
1 CCTAAAC
7858 CCTAAAC
1 CCTAAAC
7865 CCTAAAC
1 CCTAAAC
7872 C
1 C
7873 TCATAAATAT
Statistics
Matches: 7677, Mismatches: 59, Indels: 259
0.96 0.01 0.03
Matches are distributed among these distances:
5 29 0.00
6 515 0.07
7 6738 0.88
8 369 0.05
9 19 0.00
10 7 0.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.13
Consensus pattern (7 bp):
CCTAAAC
Found at i:7719 original size:30 final size:30
Alignment explanation
Indices: 7684--7776 Score: 123
Period size: 30 Copynumber: 3.0 Consensus size: 30
7674 TTAAACCCCA
7684 AACCCCAACCCAAACCCAACCCCCAAACCC
1 AACCCCAACCCAAACCCAACCCCCAAACCC
* *
7714 AACCCCAACCCCAACCCAACCCCCAACCCC
1 AACCCCAACCCAAACCCAACCCCCAAACCC
* *
7744 AACCCCAAACCCTAAACCCTAAACCCTAAACCC
1 AACCCC-AACCC-AAACCC-AACCCCCAAACCC
7777 TAAACCCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
30 34 0.63
31 5 0.09
32 5 0.09
33 10 0.19
ACGTcount: A:0.39, C:0.58, G:0.00, T:0.03
Consensus pattern (30 bp):
AACCCCAACCCAAACCCAACCCCCAAACCC
Found at i:7830 original size:13 final size:13
Alignment explanation
Indices: 7802--7846 Score: 81
Period size: 13 Copynumber: 3.4 Consensus size: 13
7792 AAAACCCTAA
7802 AACCCCGAACCCCG
1 AACCCCGAA-CCCG
7816 AACCCCGAACCCG
1 AACCCCGAACCCG
7829 AACCCCGAACCCG
1 AACCCCGAACCCG
7842 AACCC
1 AACCC
7847 TAACCCTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
13 22 0.71
14 9 0.29
ACGTcount: A:0.31, C:0.56, G:0.13, T:0.00
Consensus pattern (13 bp):
AACCCCGAACCCG
Found at i:7971 original size:23 final size:23
Alignment explanation
Indices: 7941--7987 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
7931 CAAAAAGAAA
7941 CCAAATCTAAGCATAATATAAGC
1 CCAAATCTAAGCATAATATAAGC
*
7964 CCAAATCTAAGCATTATATAAGC
1 CCAAATCTAAGCATAATATAAGC
7987 C
1 C
7988 TAAAATGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.23, G:0.09, T:0.23
Consensus pattern (23 bp):
CCAAATCTAAGCATAATATAAGC
Found at i:9709 original size:11 final size:12
Alignment explanation
Indices: 9678--9703 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9668 AAAATATTTG
9678 AAAACAAGGGAA
1 AAAACAAGGGAA
9690 AAAACAAGGGAA
1 AAAACAAGGGAA
9702 AA
1 AA
9704 TAAAGGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.08, G:0.23, T:0.00
Consensus pattern (12 bp):
AAAACAAGGGAA
Found at i:10755 original size:22 final size:22
Alignment explanation
Indices: 10728--10865 Score: 144
Period size: 21 Copynumber: 6.5 Consensus size: 22
10718 ACCAACTCAC
10728 ACCGAACCGGGGTCATAAAAAA
1 ACCGAACCGGGGTCATAAAAAA
*
10750 ATCGAACCGGGG---TAAAAAA
1 ACCGAACCGGGGTCATAAAAAA
*
10769 ACCGAACCGGGGT-ACAAAAAA
1 ACCGAACCGGGGTCATAAAAAA
10790 ACCGAACCGGGGTCAT-AAAAA
1 ACCGAACCGGGGTCATAAAAAA
* * *
10811 CCCGAACCGGGGTCCTTAAAAA
1 ACCGAACCGGGGTCATAAAAAA
* ***
10833 ATCGAACC-GGGTCCCCAAAAA
1 ACCGAACCGGGGTCATAAAAAA
10854 ACCTGAACCGGG
1 ACC-GAACCGGG
10866 ATATCCCTGG
Statistics
Matches: 99, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
19 18 0.18
21 51 0.52
22 28 0.28
23 2 0.02
ACGTcount: A:0.41, C:0.26, G:0.24, T:0.09
Consensus pattern (22 bp):
ACCGAACCGGGGTCATAAAAAA
Found at i:11292 original size:30 final size:30
Alignment explanation
Indices: 11258--11315 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
11248 ATTAGATTGG
11258 TGTCAACGGTAACATTTATGGTGATTAAGA
1 TGTCAACGGTAACATTTATGGTGATTAAGA
*
11288 TGTCAACGGTAACATTTATTGTGATTAA
1 TGTCAACGGTAACATTTATGGTGATTAA
11316 AACATTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (30 bp):
TGTCAACGGTAACATTTATGGTGATTAAGA
Found at i:18734 original size:21 final size:22
Alignment explanation
Indices: 18695--18735 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
18685 TATCCATCAT
*
18695 CAATTTTATTAGGCATAACACA
1 CAATTTTATTAGCCATAACACA
18717 CAATTTTATTA-CCATAACA
1 CAATTTTATTAGCCATAACA
18736 AAATTTACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (22 bp):
CAATTTTATTAGCCATAACACA
Found at i:19621 original size:23 final size:22
Alignment explanation
Indices: 19570--19625 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
19560 GCCAACTCAC
*
19570 ACCGAACCGGGGTCATAAAAAA
1 ACCGAACCGGGGTCACAAAAAA
* *
19592 ACCGAACCGGGGTCCCCAAAAA
1 ACCGAACCGGGGTCACAAAAAA
19614 ACCTGAACCGGG
1 ACC-GAACCGGG
19626 ATATCCCTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 22 0.73
23 8 0.27
ACGTcount: A:0.38, C:0.30, G:0.25, T:0.07
Consensus pattern (22 bp):
ACCGAACCGGGGTCACAAAAAA
Found at i:20054 original size:30 final size:30
Alignment explanation
Indices: 20020--20077 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
20010 ATTAGATTGG
20020 TGTCAACGGTAACATTTATGGTGATTAAGA
1 TGTCAACGGTAACATTTATGGTGATTAAGA
*
20050 TGTCAACGGTAACATTTATTGTGATTAA
1 TGTCAACGGTAACATTTATGGTGATTAA
20078 AACATTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (30 bp):
TGTCAACGGTAACATTTATGGTGATTAAGA
Found at i:28393 original size:18 final size:18
Alignment explanation
Indices: 28372--28430 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
28362 TAAGAAGACG
28372 AAGTATGCCTTGAAGGCT
1 AAGTATGCCTTGAAGGCT
* * *
28390 AAG--TGTCTTAGAAGACA
1 AAGTATGCCTT-GAAGGCT
*
28407 AAGCATGCCTTGAAGGCT
1 AAGTATGCCTTGAAGGCT
28425 AAGTAT
1 AAGTAT
28431 TTGAGAAGAC
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
16 5 0.16
17 8 0.26
18 13 0.42
19 5 0.16
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.25
Consensus pattern (18 bp):
AAGTATGCCTTGAAGGCT
Found at i:28403 original size:35 final size:35
Alignment explanation
Indices: 28325--28566 Score: 174
Period size: 35 Copynumber: 7.0 Consensus size: 35
28315 AAAGTTTAGT
** *
28325 TGTTTGAGAAGTTGAAGTATGCATTGAAGGCT--G
1 TGTTTGAGAAGACGAAGTATGCCTTGAAGGCTAAG
* *
28358 TGTCTAAGAAGACGAAGTATGCCTTGAAGGCTAAG
1 TGTTTGAGAAGACGAAGTATGCCTTGAAGGCTAAG
* *
28393 TGTCTT-AGAAGACAAAGCATGCCTTGAAGGCTAAG
1 TGT-TTGAGAAGACGAAGTATGCCTTGAAGGCTAAG
* * * *
28428 TATTTGAGAAGACGAAGTTTGCCTTAAAGGCTAAC
1 TGTTTGAGAAGACGAAGTATGCCTTGAAGGCTAAG
**** * * *
28463 TGCCAAAGAAAATGAACTATGCCTTGAAGGCT--G
1 TGTTTGAGAAGACGAAGTATGCCTTGAAGGCTAAG
* * * * * *
28496 TGTTTAAGAATA-GAAAGTATGTCTCGTAGGTTAAG
1 TGTTTGAGAAGACG-AAGTATGCCTTGAAGGCTAAG
* *
28531 TGTTTGAGAAGTA-GAAGTATGCATTGAAAGCTAAG
1 TGTTTGAGAAG-ACGAAGTATGCCTTGAAGGCTAAG
28566 T
1 T
28567 TCCTTGAAAT
Statistics
Matches: 159, Mismatches: 42, Indels: 14
0.74 0.20 0.07
Matches are distributed among these distances:
32 1 0.01
33 48 0.30
34 2 0.01
35 105 0.66
36 3 0.02
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.28
Consensus pattern (35 bp):
TGTTTGAGAAGACGAAGTATGCCTTGAAGGCTAAG
Found at i:28564 original size:103 final size:104
Alignment explanation
Indices: 28325--28564 Score: 240
Period size: 103 Copynumber: 2.3 Consensus size: 104
28315 AAAGTTTAGT
* * * * * * *
28325 TGTTTGAGAAGTTGAAGTATGCATTGAAGGCT--GTGTCTAAGAAGACGAAGTATGCCTTGAAGG
1 TGTTTGAGAAGTAGAAGTATGCATTGAAAGCTAACTGCCAAAGAAAACGAACTATGCCTTGAAGG
*
28388 CTAAGTGTCTTAGAAGACAAAGCATGCCTTGAAGGCTAAG
66 CT-AGTGTCTTAGAAGACAAAGCATGCCTCGAAGGCTAAG
* * * *
28428 TATTTGAGAAG-ACGAAGTTTGCCTT-AAAGGCTAACTGCCAAAGAAAATGAACTATGCCTTGAA
1 TGTTTGAGAAGTA-GAAGTATGCATTGAAA-GCTAACTGCCAAAGAAAACGAACTATGCCTTGAA
* * * * * *
28491 GGCT-GTGT-TTAAGAATAGAAAGTATGTCTCGTAGGTTAAG
64 GGCTAGTGTCTT-AGAAGACAAAGCATGCCTCGAAGGCTAAG
28531 TGTTTGAGAAGTAGAAGTATGCATTGAAAGCTAA
1 TGTTTGAGAAGTAGAAGTATGCATTGAAAGCTAA
28565 GTTCCTTGAA
Statistics
Matches: 109, Mismatches: 21, Indels: 14
0.76 0.15 0.10
Matches are distributed among these distances:
102 4 0.04
103 74 0.68
104 4 0.04
105 27 0.25
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.28
Consensus pattern (104 bp):
TGTTTGAGAAGTAGAAGTATGCATTGAAAGCTAACTGCCAAAGAAAACGAACTATGCCTTGAAGG
CTAGTGTCTTAGAAGACAAAGCATGCCTCGAAGGCTAAG
Found at i:30343 original size:27 final size:29
Alignment explanation
Indices: 30295--30358 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 29
30285 ATGTGGCCAT
* * *
30295 TGGTTTTTTGCGACTTGGGATAGTTGTCC
1 TGGTTTTTTGCGACTTGGGATAATGGTCA
* *
30324 TGGTTTTTTGTG-C-TGTGATAATGGTCA
1 TGGTTTTTTGCGACTTGGGATAATGGTCA
30351 TGGTTTTT
1 TGGTTTTT
30359 GGGTTTCTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 18 0.60
28 1 0.03
29 11 0.37
ACGTcount: A:0.11, C:0.09, G:0.30, T:0.50
Consensus pattern (29 bp):
TGGTTTTTTGCGACTTGGGATAATGGTCA
Found at i:43482 original size:48 final size:48
Alignment explanation
Indices: 43422--43527 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
43412 CGGCCACAAT
* *
43422 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
43470 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
43518 ACATATATAT
1 ATATACATAT
43528 ATTTATCTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:44550 original size:26 final size:26
Alignment explanation
Indices: 44513--44563 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
44503 TTTGGCAATA
44513 CTTTTGAAAAGTGCTGTGGAAAAATG
1 CTTTTGAAAAGTGCTGTGGAAAAATG
* * *
44539 CTTTTGAGAAGTGCTTTTGAAAAAT
1 CTTTTGAAAAGTGCTGTGGAAAAAT
44564 TTGGTTTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
CTTTTGAAAAGTGCTGTGGAAAAATG
Found at i:44553 original size:13 final size:13
Alignment explanation
Indices: 44513--44561 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
44503 TTTGGCAATA
44513 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* * *
44526 CTGTGGAAAAATG
1 CTTTTGAAAAGTG
*
44539 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
44552 CTTTTGAAAA
1 CTTTTGAAAA
44562 ATTTGGTTTA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:44782 original size:31 final size:30
Alignment explanation
Indices: 44735--44792 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
44725 ACTTCTTGTT
44735 AATATTTTAATAAATAAAATATAAATTTTA
1 AATATTTTAATAAATAAAATATAAATTTTA
*
44765 AATATTTTTAA-ACAATAAAATATTAATT
1 AATA-TTTTAATA-AATAAAATATAAATT
44793 ATTTATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (30 bp):
AATATTTTAATAAATAAAATATAAATTTTA
Found at i:44795 original size:25 final size:26
Alignment explanation
Indices: 44752--44801 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
44742 TAATAAATAA
* *
44752 AATATAAATTTTAAATATTTTTAAAC
1 AATATAAATATTAAATATTTATAAAC
*
44778 AATA-AAATATTAATTATTTATAAA
1 AATATAAATATTAAATATTTATAAA
44802 ATTTAATTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (26 bp):
AATATAAATATTAAATATTTATAAAC
Found at i:58111 original size:52 final size:52
Alignment explanation
Indices: 58049--58152 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
58039 AAATCCCCTA
58049 AGGTGAAATGTTTCCTATGGAATTTGGTTTAACAGAATTCCAACTCTTGATT
1 AGGTGAAATGTTTCCTATGGAATTTGGTTTAACAGAATTCCAACTCTTGATT
58101 AGGTGAAATGTTTCCTATGGAATTTGGTTTAACAGAATTCCAACTCTTGATT
1 AGGTGAAATGTTTCCTATGGAATTTGGTTTAACAGAATTCCAACTCTTGATT
58153 TTTTTTCTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.38
Consensus pattern (52 bp):
AGGTGAAATGTTTCCTATGGAATTTGGTTTAACAGAATTCCAACTCTTGATT
Found at i:59407 original size:31 final size:31
Alignment explanation
Indices: 59372--59438 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
59362 AAAGACAAAG
59372 AAAAATTCCTATCTACTACAGCAGGTAAACA
1 AAAAATTCCTATCTACTACAGCAGGTAAACA
59403 AAAAATTCCTATCTACTACAGCAGGTAAACA
1 AAAAATTCCTATCTACTACAGCAGGTAAACA
59434 AAAAA
1 AAAAA
59439 ACAAAAGTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.49, C:0.21, G:0.09, T:0.21
Consensus pattern (31 bp):
AAAAATTCCTATCTACTACAGCAGGTAAACA
Found at i:59708 original size:71 final size:71
Alignment explanation
Indices: 59587--59734 Score: 287
Period size: 71 Copynumber: 2.1 Consensus size: 71
59577 CTTTTTTATA
59587 CACTAAATCATCTGTATACCACTTTCTCTCTGCTTCTTGCTTGTTCACCTACTCAACTCAAGCAT
1 CACT-AATCATCTGTATACCACTTTCTCTCTGCTTCTTGCTTGTTCACCTACTCAACTCAAGCAT
59652 ACATCTC
65 ACATCTC
59659 CACTAATCATCTGTATACCACTTTCTCTCTGCTTCTTGCTTGTTCACCTACTCAACTCAAGCATA
1 CACTAATCATCTGTATACCACTTTCTCTCTGCTTCTTGCTTGTTCACCTACTCAACTCAAGCATA
59724 CATCTC
66 CATCTC
59730 CACTA
1 CACTA
59735 TTAAAGCTAC
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 72 0.95
72 4 0.05
ACGTcount: A:0.24, C:0.34, G:0.07, T:0.36
Consensus pattern (71 bp):
CACTAATCATCTGTATACCACTTTCTCTCTGCTTCTTGCTTGTTCACCTACTCAACTCAAGCATA
CATCTC
Found at i:60921 original size:132 final size:132
Alignment explanation
Indices: 60699--60965 Score: 534
Period size: 132 Copynumber: 2.0 Consensus size: 132
60689 TTCACTGTGG
60699 AAATACCTAATATATACCAGCAGTCATAGGTTTCATTAACCTGAAAAAGGGGACTGATTAGATAG
1 AAATACCTAATATATACCAGCAGTCATAGGTTTCATTAACCTGAAAAAGGGGACTGATTAGATAG
60764 ATTTACATAAAATTGCACTTAAAAAAATCTGGTCTGTACATGATCACAAGGAACAACCGGAACTT
66 ATTTACATAAAATTGCACTTAAAAAAATCTGGTCTGTACATGATCACAAGGAACAACCGGAACTT
60829 GA
131 GA
60831 AAATACCTAATATATACCAGCAGTCATAGGTTTCATTAACCTGAAAAAGGGGACTGATTAGATAG
1 AAATACCTAATATATACCAGCAGTCATAGGTTTCATTAACCTGAAAAAGGGGACTGATTAGATAG
60896 ATTTACATAAAATTGCACTTAAAAAAATCTGGTCTGTACATGATCACAAGGAACAACCGGAACTT
66 ATTTACATAAAATTGCACTTAAAAAAATCTGGTCTGTACATGATCACAAGGAACAACCGGAACTT
60961 GA
131 GA
60963 AAA
1 AAA
60966 AGCTACCTTA
Statistics
Matches: 135, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
132 135 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.25
Consensus pattern (132 bp):
AAATACCTAATATATACCAGCAGTCATAGGTTTCATTAACCTGAAAAAGGGGACTGATTAGATAG
ATTTACATAAAATTGCACTTAAAAAAATCTGGTCTGTACATGATCACAAGGAACAACCGGAACTT
GA
Found at i:70359 original size:43 final size:44
Alignment explanation
Indices: 70298--70390 Score: 172
Period size: 43 Copynumber: 2.2 Consensus size: 44
70288 TTCTAATTGG
70298 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
70341 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
70385 -AAAATA
1 GAAAATA
70391 TTTCTAGAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
43 48 0.98
44 1 0.02
ACGTcount: A:0.53, C:0.15, G:0.04, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:70434 original size:19 final size:18
Alignment explanation
Indices: 70412--70451 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
70402 TGAATAAAAC
70412 TTATCTACCCAAATAAGAT
1 TTATCTACCCAAATAA-AT
* *
70431 TTATCTATCTAAATAAAT
1 TTATCTACCCAAATAAAT
70449 TTA
1 TTA
70452 AAATATATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCCAAATAAAT
Found at i:75084 original size:43 final size:44
Alignment explanation
Indices: 75036--75128 Score: 163
Period size: 43 Copynumber: 2.2 Consensus size: 44
75026 TCCTAATTGG
75036 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
*
75079 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
75123 -AAAATA
1 GAAAATA
75129 TTTCTAGAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
43 47 0.98
44 1 0.02
ACGTcount: A:0.53, C:0.14, G:0.05, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:75172 original size:19 final size:18
Alignment explanation
Indices: 75150--75189 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
75140 TGAATAAAAC
75150 TTATCTACCCAAATAAGAT
1 TTATCTACCCAAATAA-AT
*
75169 TTATCTACCTAAATAAAT
1 TTATCTACCCAAATAAAT
75187 TTA
1 TTA
75190 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (18 bp):
TTATCTACCCAAATAAAT
Found at i:76960 original size:19 final size:19
Alignment explanation
Indices: 76936--76974 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
76926 TTGTAAATAG
*
76936 ATACACATGTATTAATAAT
1 ATACACATGTATAAATAAT
76955 ATACACATGTATAAATAAT
1 ATACACATGTATAAATAAT
76974 A
1 A
76975 AATAAGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (19 bp):
ATACACATGTATAAATAAT
Found at i:77871 original size:15 final size:15
Alignment explanation
Indices: 77823--77872 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
77813 TTTATCAAAT
77823 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* * *
77838 TCATTTTGATTGAAT
1 TTATATTGATTGAAA
77853 TTATATTGATTGAAA
1 TTATATTGATTGAAA
77868 TTATA
1 TTATA
77873 ATATATATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.36, C:0.02, G:0.12, T:0.50
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:78530 original size:18 final size:19
Alignment explanation
Indices: 78507--78547 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
78497 AATGAAATGA
78507 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
78525 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
78544 GAAA
1 GAAA
78548 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:78545 original size:13 final size:13
Alignment explanation
Indices: 78495--78534 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
78485 TTGAGCTATT
78495 AGAA-TGAAA-TG
1 AGAATTGAAATTG
78506 AGAAATTG-AATTG
1 AG-AATTGAAATTG
78519 AGAATTGAAATTG
1 AGAATTGAAATTG
78532 AGA
1 AGA
78535 TATGAGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 2 0.08
12 9 0.36
13 14 0.56
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (13 bp):
AGAATTGAAATTG
Found at i:84454 original size:35 final size:35
Alignment explanation
Indices: 84415--84485 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
84405 GGTACATCTC
84415 TGAGTTTGTAACCTAATTCCTGCTTCTTTCCATGT
1 TGAGTTTGTAACCTAATTCCTGCTTCTTTCCATGT
84450 TGAGTTTGTAACCTAATTCCTGCTTCTTTCCATGT
1 TGAGTTTGTAACCTAATTCCTGCTTCTTTCCATGT
84485 T
1 T
84486 TAAGACTTGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.17, C:0.23, G:0.14, T:0.46
Consensus pattern (35 bp):
TGAGTTTGTAACCTAATTCCTGCTTCTTTCCATGT
Found at i:91234 original size:13 final size:13
Alignment explanation
Indices: 91213--91255 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
91203 TCTTCATTAT
91213 TTTTGAAAAA-TAC
1 TTTT-AAAAAGTAC
91226 TTTTAAAAAGTAC
1 TTTTAAAAAGTAC
* *
91239 TGTGAAAAAGTAC
1 TTTTAAAAAGTAC
91252 TTTT
1 TTTT
91256 GAGTATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 5 0.20
13 20 0.80
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.40
Consensus pattern (13 bp):
TTTTAAAAAGTAC
Found at i:104237 original size:12 final size:12
Alignment explanation
Indices: 104220--104246 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
104210 TGCTGCCACC
104220 TCTCTTGCTAGT
1 TCTCTTGCTAGT
104232 TCTCTTGCTAGT
1 TCTCTTGCTAGT
104244 TCT
1 TCT
104247 GTAGAAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.26, G:0.15, T:0.52
Consensus pattern (12 bp):
TCTCTTGCTAGT
Found at i:112819 original size:21 final size:21
Alignment explanation
Indices: 112795--112841 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
112785 AATTGATCTA
* *
112795 AAAAAGAGCAAGAAAGACAAG
1 AAAAAGAGAAAGAAAGAAAAG
*
112816 AAAAAGCGAAAGAAAGAAAAG
1 AAAAAGAGAAAGAAAGAAAAG
*
112837 GAAAA
1 AAAAA
112842 CAACGAAGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.70, C:0.06, G:0.23, T:0.00
Consensus pattern (21 bp):
AAAAAGAGAAAGAAAGAAAAG
Found at i:125667 original size:25 final size:25
Alignment explanation
Indices: 125638--125689 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
125628 GCGGTTGAAA
125638 GAAGAAAGATGTTGGATTGACATGG
1 GAAGAAAGATGTTGGATTGACATGG
125663 GAAGAAAGATGTTGGATTGACATGG
1 GAAGAAAGATGTTGGATTGACATGG
125688 GA
1 GA
125690 CTTGAAGAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.37, T:0.23
Consensus pattern (25 bp):
GAAGAAAGATGTTGGATTGACATGG
Found at i:126292 original size:22 final size:22
Alignment explanation
Indices: 126264--126308 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
126254 TTATAGAAAA
126264 TAAATGAAAAATATCCATTGCT
1 TAAATGAAAAATATCCATTGCT
126286 TAAATGAAAAATATCCATTGCT
1 TAAATGAAAAATATCCATTGCT
126308 T
1 T
126309 TTCGTTCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.33
Consensus pattern (22 bp):
TAAATGAAAAATATCCATTGCT
Found at i:126416 original size:42 final size:45
Alignment explanation
Indices: 126306--126452 Score: 201
Period size: 45 Copynumber: 3.3 Consensus size: 45
126296 ATATCCATTG
* * *
126306 CTTTTCGTTCTTGGTTCTCATCCTCGTTTATCTTCTTCTCCATTT
1 CTTTTCGTTCTTGCTTCTCATCCTCGTTTATCTTCTTGTCCTTTT
* * *
126351 CTTTTTGTTCTTGGTTCTTATCCTC-TTT-TC-TCTTGTCCTTTT
1 CTTTTCGTTCTTGCTTCTCATCCTCGTTTATCTTCTTGTCCTTTT
* *
126393 CTTTTCGTTCTTGCTTCTCATCCTCTTTTCTCTTCTTGTCCTTTT
1 CTTTTCGTTCTTGCTTCTCATCCTCGTTTATCTTCTTGTCCTTTT
126438 CTTTTCGTTCTTGCT
1 CTTTTCGTTCTTGCT
126453 CCTCTAATTT
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
42 32 0.35
43 5 0.05
44 5 0.05
45 50 0.54
ACGTcount: A:0.03, C:0.28, G:0.09, T:0.60
Consensus pattern (45 bp):
CTTTTCGTTCTTGCTTCTCATCCTCGTTTATCTTCTTGTCCTTTT
Found at i:126552 original size:18 final size:18
Alignment explanation
Indices: 126529--126604 Score: 101
Period size: 18 Copynumber: 4.6 Consensus size: 18
126519 CCTTCCCTTG
*
126529 CTGTGCCTGTGGTTGTTC
1 CTGTGCCTGTGGTTGTGC
126547 CTGTGCCTGTGGTTGTGC
1 CTGTGCCTGTGGTTGTGC
126565 CTGTGCC------TGTGC
1 CTGTGCCTGTGGTTGTGC
126577 CTGTGCCTGTGGTTGTGC
1 CTGTGCCTGTGGTTGTGC
126595 CTGTGCCTGT
1 CTGTGCCTGT
126605 TCACCTGCCT
Statistics
Matches: 51, Mismatches: 1, Indels: 12
0.80 0.02 0.19
Matches are distributed among these distances:
12 12 0.24
18 39 0.76
ACGTcount: A:0.00, C:0.25, G:0.36, T:0.39
Consensus pattern (18 bp):
CTGTGCCTGTGGTTGTGC
Found at i:126555 original size:6 final size:6
Alignment explanation
Indices: 126529--126604 Score: 89
Period size: 6 Copynumber: 12.7 Consensus size: 6
126519 CCTTCCCTTG
* * * * *
126529 CTGTGC CTGTGG TTGTTC CTGTGC CTGTGG TTGTGC CTGTGC CTGTGC
1 CTGTGC CTGTGC CTGTGC CTGTGC CTGTGC CTGTGC CTGTGC CTGTGC
* *
126577 CTGTGC CTGTGG TTGTGC CTGTGC CTGT
1 CTGTGC CTGTGC CTGTGC CTGTGC CTGT
126605 TCACCTGCCT
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 56 1.00
ACGTcount: A:0.00, C:0.25, G:0.36, T:0.39
Consensus pattern (6 bp):
CTGTGC
Found at i:127421 original size:30 final size:29
Alignment explanation
Indices: 127356--127422 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
127346 GTTTTTAAAC
* *
127356 AAGCCCTTAACTTATTTTTGTAGTTAAAT
1 AAGCCCTTAACTTATTTTTGTACTCAAAT
127385 AAGCCCTTAACTTATGGTTTT-TACTCATAA-
1 AAGCCCTTAACTTAT--TTTTGTACTCA-AAT
127415 AAGCCCTT
1 AAGCCCTT
127423 TTATTTTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 15 0.45
30 12 0.36
31 6 0.18
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.40
Consensus pattern (29 bp):
AAGCCCTTAACTTATTTTTGTACTCAAAT
Found at i:131351 original size:45 final size:44
Alignment explanation
Indices: 131294--131521 Score: 300
Period size: 45 Copynumber: 5.2 Consensus size: 44
131284 AGCTTTCCTC
* *
131294 TCTT-CTTCTCATCCTCTATTCTCTTCTTCTCTTTTTCTTTTCGT
1 TCTTGCTTCTCATCCTCT-TTCTCTTCTTGTCCTTTTCTTTTCGT
* *
131338 TCTTGCTTCTCATCCTCTTTTCTCTTCTTGTCCATTGCTTTTCGT
1 TCTTGCTTCTCATCCTC-TTTCTCTTCTTGTCCTTTTCTTTTCGT
* * * *
131383 TCTTGGTTCTCATCCTCGTTTATCTTCTTCTCCATTTCTTTTCGT
1 TCTTGCTTCTCATCCTC-TTTCTCTTCTTGTCCTTTTCTTTTCGT
* *
131428 TCTTGGTTCTTATCCTCTTT-TC-TCTTGTCCTTTTCTTTTCGT
1 TCTTGCTTCTCATCCTCTTTCTCTTCTTGTCCTTTTCTTTTCGT
*
131470 TCTTGCTTCTCATCCTCTTTTCTCTTCTTGTCCTTTCCTTTTCGT
1 TCTTGCTTCTCATCCTC-TTTCTCTTCTTGTCCTTTTCTTTTCGT
131515 TCTTGCT
1 TCTTGCT
131522 CCTCTAATTT
Statistics
Matches: 164, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
42 33 0.20
43 5 0.03
44 9 0.05
45 116 0.71
46 1 0.01
ACGTcount: A:0.04, C:0.30, G:0.07, T:0.58
Consensus pattern (44 bp):
TCTTGCTTCTCATCCTCTTTCTCTTCTTGTCCTTTTCTTTTCGT
Found at i:131480 original size:87 final size:88
Alignment explanation
Indices: 131294--131521 Score: 302
Period size: 87 Copynumber: 2.6 Consensus size: 88
131284 AGCTTTCCTC
*
131294 TCTT-CTTCTCATCCTCTATTCTCTTCTTCTCTTTTTCTTTTCGTTCTTGCTTCTCATCCTCTTT
1 TCTTGCTTCTCATCCTCT-TTCTCTTCTTCTC-CTTTCTTTTCGTTCTTGCTTCTCATCCTCTTT
131358 TCTCTTCTTGTCCATTGCTTTTCGT
64 TCTCTTCTTGTCCATTGCTTTTCGT
* * * *
131383 TCTTGGTTCTCATCCTCGTTTATCTTCTTCTCCATTTCTTTTCGTTCTTGGTTCTTATCCTC-TT
1 TCTTGCTTCTCATCCTC-TTTCTCTTCTTCTCC-TTTCTTTTCGTTCTTGCTTCTCATCCTCTTT
* *
131447 T-TC-TCTTGTCCTTTTCTTTTCGT
64 TCTCTTCTTGTCCATTGCTTTTCGT
*
131470 TCTTGCTTCTCATCCTCTTTTCTCTTCTTGTCCTTTCCTTTTCGTTCTTGCT
1 TCTTGCTTCTCATCCTC-TTTCTCTTCTTCTCCTTT-CTTTTCGTTCTTGCT
131522 CCTCTAATTT
Statistics
Matches: 123, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
86 3 0.02
87 61 0.50
88 2 0.02
89 7 0.06
90 49 0.40
91 1 0.01
ACGTcount: A:0.04, C:0.30, G:0.07, T:0.58
Consensus pattern (88 bp):
TCTTGCTTCTCATCCTCTTTCTCTTCTTCTCCTTTCTTTTCGTTCTTGCTTCTCATCCTCTTTTC
TCTTCTTGTCCATTGCTTTTCGT
Found at i:131591 original size:132 final size:132
Alignment explanation
Indices: 131294--131591 Score: 290
Period size: 132 Copynumber: 2.2 Consensus size: 132
131284 AGCTTTCCTC
* *
131294 TCTTC-TTCTCATCCTCTATTCT-CTTCTTCTCTTTTTCTTTTCGTTCTTGCTTCTCATCCTCTT
1 TCTTCGTTCTCATCCTC---TCTGCTTCTTATCCTTTTCTTTTCGTTCTTGCTTCTCATCCTCTT
* ** *
131357 TTCTCTTCTTGTCCATTGCTTTTCGTTCTTGGTTCTCATCCTCGTTTATCTTCTTCTCCATTTCT
63 TTCTCTTCTTGTCCATTCCTTTTCGTTCTTGG-TCTCATCCTAATTTATCTTCTGCTCCATTTCT
*
131422 TTTCGT
127 CTTCGT
* * * * *
131428 TCTTGGTTCTTATCCTCTTTTC-TCTTGTCCTTTTCTTTTCGTTCTTGCTTCTCATCCTCTTTTC
1 TCTTCGTTCTCATCCTCTCTGCTTCTTATCCTTTTCTTTTCGTTCTTGCTTCTCATCCTCTTTTC
* * * *
131492 TCTTCTTGTCCTTTCCTTTTCGTTCTT-G-CTCCT-CTAATTTCTGCTTCTGCT-TATTTTTCGT
66 TCTTCTTGTCCATTCCTTTTCGTTCTTGGTCTCATCCTAATTTAT-CTTCTGCTCCA--TTTC-T
131553 CTTCG-
127 CTTCGT
*
131558 TCTTCG-TCTCGTCCTCTGCCTGCTTCTTATCCTT
1 TCTTCGTTCTCATCCTCT--CTGCTTCTTATCCTT
131592 CCCTTGCTGT
Statistics
Matches: 135, Mismatches: 20, Indels: 20
0.77 0.11 0.11
Matches are distributed among these distances:
128 7 0.05
129 20 0.15
130 9 0.07
131 8 0.06
132 76 0.56
133 1 0.01
134 4 0.03
135 10 0.07
ACGTcount: A:0.04, C:0.31, G:0.08, T:0.56
Consensus pattern (132 bp):
TCTTCGTTCTCATCCTCTCTGCTTCTTATCCTTTTCTTTTCGTTCTTGCTTCTCATCCTCTTTTC
TCTTCTTGTCCATTCCTTTTCGTTCTTGGTCTCATCCTAATTTATCTTCTGCTCCATTTCTCTTC
GT
Found at i:131624 original size:6 final size:6
Alignment explanation
Indices: 131598--131685 Score: 104
Period size: 6 Copynumber: 14.7 Consensus size: 6
131588 CCTTCCCTTG
* * * * *
131598 CTGTGC CTGTGG TTGTTC CTGTGC CTGTGG TTGTGC CTGTGC CTGTGC
1 CTGTGC CTGTGC CTGTGC CTGTGC CTGTGC CTGTGC CTGTGC CTGTGC
* * *
131646 CTGTGC CTGTGG TTGTGC CTGTGC CTGTTC CTGTGC CTGT
1 CTGTGC CTGTGC CTGTGC CTGTGC CTGTGC CTGTGC CTGT
131686 TCACGTGCCT
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 66 1.00
ACGTcount: A:0.00, C:0.26, G:0.34, T:0.40
Consensus pattern (6 bp):
CTGTGC
Found at i:131695 original size:30 final size:30
Alignment explanation
Indices: 131599--131685 Score: 147
Period size: 30 Copynumber: 2.9 Consensus size: 30
131589 CTTCCCTTGC
**
131599 TGTGCCTGTGGTTGTTCCTGTGCCTGTGGT
1 TGTGCCTGTGCCTGTTCCTGTGCCTGTGGT
*
131629 TGTGCCTGTGCCTGTGCCTGTGCCTGTGGT
1 TGTGCCTGTGCCTGTTCCTGTGCCTGTGGT
131659 TGTGCCTGTGCCTGTTCCTGTGCCTGT
1 TGTGCCTGTGCCTGTTCCTGTGCCTGT
131686 TCACGTGCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.00, C:0.25, G:0.34, T:0.40
Consensus pattern (30 bp):
TGTGCCTGTGCCTGTTCCTGTGCCTGTGGT
Found at i:132520 original size:27 final size:27
Alignment explanation
Indices: 132482--132536 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
132472 TCAGATGTCT
132482 CGTCCTTGGACTTTGGATCCCCAGCAG
1 CGTCCTTGGACTTTGGATCCCCAGCAG
132509 CGTCCTTGGACTTTGGATCCCCAGCAG
1 CGTCCTTGGACTTTGGATCCCCAGCAG
132536 C
1 C
132537 CGTATCAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (27 bp):
CGTCCTTGGACTTTGGATCCCCAGCAG
Found at i:134339 original size:19 final size:19
Alignment explanation
Indices: 134312--134357 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
134302 GTTTAGTAGT
* *
134312 GCTTAAAAAAATACTTTTG
1 GCTTCAAAAAACACTTTTG
134331 GCTTC-AAAAACACTTTTG
1 GCTTCAAAAAACACTTTTG
*
134349 GCTCCAAAA
1 GCTTCAAAA
134358 GTTTTACTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (19 bp):
GCTTCAAAAAACACTTTTG
Found at i:134357 original size:17 final size:18
Alignment explanation
Indices: 134318--134357 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
134308 TAGTGCTTAA
*
134318 AAAAATACTTTTGGCTTC
1 AAAAACACTTTTGGCTTC
*
134336 AAAAACACTTTTGGCTCC
1 AAAAACACTTTTGGCTTC
134354 AAAA
1 AAAA
134358 GTTTTACTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (18 bp):
AAAAACACTTTTGGCTTC
Found at i:134934 original size:26 final size:26
Alignment explanation
Indices: 134898--134952 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
134888 ATTAAACCAA
* *
134898 ATTTTTCAAAAGT-ACTTTTCTACAAT
1 ATTTTTCAAAA-TCACTTTTCAAAAAT
134924 ATTTTTCAAAATCACTTTTCAAAAAT
1 ATTTTTCAAAATCACTTTTCAAAAAT
134950 ATT
1 ATT
134953 GTTAAACTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.45
Consensus pattern (26 bp):
ATTTTTCAAAATCACTTTTCAAAAAT
Found at i:134942 original size:13 final size:12
Alignment explanation
Indices: 134900--134947 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
134890 TAAACCAAAT
134900 TTTTCAAAAGTAC
1 TTTTCAAAA-TAC
* *
134913 TTTTCTACAATAT
1 TTTTC-AAAATAC
134926 TTTTCAAAATCAC
1 TTTTCAAAAT-AC
134939 TTTTCAAAA
1 TTTTCAAAA
134948 ATATTGTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 4 0.14
13 22 0.76
14 3 0.10
ACGTcount: A:0.38, C:0.17, G:0.02, T:0.44
Consensus pattern (12 bp):
TTTTCAAAATAC
Found at i:143776 original size:28 final size:28
Alignment explanation
Indices: 143745--143802 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
143735 GTGGAAAGTA
*
143745 AAAAATATATACTAGAACCAAAGGAAGC
1 AAAAATACATACTAGAACCAAAGGAAGC
*
143773 AAAAATACATACTAGAGCCAAAGGAAGC
1 AAAAATACATACTAGAACCAAAGGAAGC
143801 AA
1 AA
143803 CTCATATCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.12
Consensus pattern (28 bp):
AAAAATACATACTAGAACCAAAGGAAGC
Found at i:155417 original size:24 final size:24
Alignment explanation
Indices: 155384--155429 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
155374 CAACTCAACA
155384 ATGAAATACATACATATATATATG
1 ATGAAATACATACATATATATATG
* *
155408 ATGAATTACATGCATATATATA
1 ATGAAATACATACATATATATA
155430 AATATGAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (24 bp):
ATGAAATACATACATATATATATG
Found at i:165650 original size:19 final size:19
Alignment explanation
Indices: 165617--165655 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
165607 TGCAATTTTC
*
165617 TTTTTGCCATACATCATATT
1 TTTTTGACATACATC-TATT
165637 TTTTTGACAT-CATCTATT
1 TTTTTGACATACATCTATT
165655 T
1 T
165656 GATTCTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 4 0.22
20 9 0.50
ACGTcount: A:0.23, C:0.18, G:0.05, T:0.54
Consensus pattern (19 bp):
TTTTTGACATACATCTATT
Found at i:167938 original size:42 final size:43
Alignment explanation
Indices: 167860--167942 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
167850 TATATAAGTA
167860 CGTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGTGT
1 CGTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGTGT
167903 CGTGAATGTGATACCTTTCTTTGTTGAAAG-AAGGGTAAGT
1 CGTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGT
167943 ATGCACAGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 10 0.25
43 30 0.75
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.35
Consensus pattern (43 bp):
CGTGAATGTGATACCTTTCTTTGTTGAAAGAAAGGGTAAGTGT
Found at i:169081 original size:23 final size:23
Alignment explanation
Indices: 169055--169124 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
169045 TTCATTTAAC
169055 TTAATCAAACATGTTCACGAACA
1 TTAATCAAACATGTTCACGAACA
* *
169078 TTAAACAAACATGTTCATGAACA
1 TTAATCAAACATGTTCACGAACA
** *
169101 TATAATTGAACATATTCACGAACA
1 T-TAATCAAACATGTTCACGAACA
169125 ATGTTAATAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
23 22 0.56
24 17 0.44
ACGTcount: A:0.46, C:0.19, G:0.09, T:0.27
Consensus pattern (23 bp):
TTAATCAAACATGTTCACGAACA
Found at i:169952 original size:16 final size:16
Alignment explanation
Indices: 169931--169961 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
169921 GGGTTTTTTC
*
169931 AAAAAAAGAAAAAAGG
1 AAAAAAAAAAAAAAGG
169947 AAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAG
169962 AGAGTAGCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAAAGG
Found at i:172108 original size:181 final size:181
Alignment explanation
Indices: 171804--172166 Score: 645
Period size: 181 Copynumber: 2.0 Consensus size: 181
171794 CCAATGCTTA
*
171804 CTATATTGTTCATTTGGGAAAAAGTGCTATAGAGGCCCTTGTACTAGAAGTTGGATCGCTTTTTG
1 CTATATTGTTCATTTGGGAAAAAGTGCTATAGAGGCCCTTGTACTAGAAGTTGGATCGCATTTTG
171869 CTCCCTTTACTATAAAAATGGACAAATTAGTCCCTATACATTAAAGCAAAGAGCAAATTGGTCAT
66 CTCCCTTTACTATAAAAATGGACAAATTAGTCCCTATACATTAAAGCAAAGAGCAAATTGGTCAT
*
171934 TTTGTTGAAAATTTCATCCATTTCTACTTATAAAAACCGGTCCATGTACGT
131 TTTGTTGAAAATTTCATCCATTTCTACTGATAAAAACCGGTCCATGTACGT
* * *
171985 CTATATTGTTCGTTTGGGGAAAAGTGCTATAGAGGCCCTTGTACTAGAAGTTGGATTGCATTTTG
1 CTATATTGTTCATTTGGGAAAAAGTGCTATAGAGGCCCTTGTACTAGAAGTTGGATCGCATTTTG
* * * *
172050 CTTCGTTTACTATAAAAATGGACAAATTAGTCCCTGTACATTAAAGCAAAGAGCAAATTGGTCGT
66 CTCCCTTTACTATAAAAATGGACAAATTAGTCCCTATACATTAAAGCAAAGAGCAAATTGGTCAT
172115 TTTGTTGAAAATTTCATCCATTTCTACTGATAAAAACCGGTCCATGTACGT
131 TTTGTTGAAAATTTCATCCATTTCTACTGATAAAAACCGGTCCATGTACGT
172166 C
1 C
172167 AGAATGTGGT
Statistics
Matches: 173, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
181 173 1.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (181 bp):
CTATATTGTTCATTTGGGAAAAAGTGCTATAGAGGCCCTTGTACTAGAAGTTGGATCGCATTTTG
CTCCCTTTACTATAAAAATGGACAAATTAGTCCCTATACATTAAAGCAAAGAGCAAATTGGTCAT
TTTGTTGAAAATTTCATCCATTTCTACTGATAAAAACCGGTCCATGTACGT
Found at i:182943 original size:12 final size:12
Alignment explanation
Indices: 182926--182951 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
182916 CTGATAGGAA
182926 AATTTTTGCATG
1 AATTTTTGCATG
182938 AATTTTTGCATG
1 AATTTTTGCATG
182950 AA
1 AA
182952 GAGCTTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (12 bp):
AATTTTTGCATG
Found at i:188429 original size:16 final size:17
Alignment explanation
Indices: 188398--188435 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
188388 AGTAGTTTTA
188398 AATAAAAGTATTAATAT
1 AATAAAAGTATTAATAT
*
188415 AATAAAAG-GTTAATAT
1 AATAAAAGTATTAATAT
188431 AATAA
1 AATAA
188436 TATTTGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.32
Consensus pattern (17 bp):
AATAAAAGTATTAATAT
Found at i:207381 original size:21 final size:20
Alignment explanation
Indices: 207348--207391 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
207338 TAAAAAATTT
* *
207348 AAAAT-TTTGAAAATATAAA
1 AAAATCTTTTAAAAAATAAA
*
207367 AAAATCTTTTAAAAAATTAA
1 AAAATCTTTTAAAAAATAAA
207387 AAAAT
1 AAAAT
207392 TATAAGTGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (20 bp):
AAAATCTTTTAAAAAATAAA
Found at i:215887 original size:3 final size:3
Alignment explanation
Indices: 215879--215904 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
215869 CATTTACCTG
215879 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
215905 AAAACTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:216131 original size:20 final size:20
Alignment explanation
Indices: 216108--216152 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
216098 AAACTAATTA
216108 TAAAA-TATTATATAATATTT
1 TAAAATTATT-TATAATATTT
* *
216128 TAAAATTATTTTTACTATTT
1 TAAAATTATTTATAATATTT
216148 TAAAA
1 TAAAA
216153 ATAAAAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TAAAATTATTTATAATATTT
Found at i:238262 original size:29 final size:30
Alignment explanation
Indices: 238203--238260 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
238193 TCCGAGCCTT
*
238203 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
238233 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
238261 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:238490 original size:13 final size:13
Alignment explanation
Indices: 238472--238503 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
238462 TTTCCAGCAA
238472 TTATGAATTTATT
1 TTATGAATTTATT
238485 TTATGAATTTATT
1 TTATGAATTTATT
*
238498 TGATGA
1 TTATGA
238504 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:238678 original size:50 final size:50
Alignment explanation
Indices: 238598--238783 Score: 266
Period size: 50 Copynumber: 3.7 Consensus size: 50
238588 ATTTGGGTAA
238598 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
238648 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
238698 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
*
238748 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGC
238784 TTTGGCATGT
Statistics
Matches: 120, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
49 1 0.01
50 90 0.75
51 29 0.24
ACGTcount: A:0.27, C:0.25, G:0.30, T:0.18
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:254539 original size:12 final size:12
Alignment explanation
Indices: 254522--254546 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
254512 CACAACATGC
254522 ATGGTATTAAAA
1 ATGGTATTAAAA
254534 ATGGTATTAAAA
1 ATGGTATTAAAA
254546 A
1 A
254547 AACATAATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
ATGGTATTAAAA
Found at i:254714 original size:3 final size:3
Alignment explanation
Indices: 254708--254746 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
254698 ACACTACTAT
254708 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
254747 TAGAAATACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:271312 original size:28 final size:26
Alignment explanation
Indices: 271273--271334 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 26
271263 ATTAATTTTT
271273 TTAAAA-TTTT-AAAATTCAAAAAATA
1 TTAAAATTTTTAAAAATT-AAAAAATA
*
271298 TATAAATATTTTTAAAAATTAAAAATTA
1 T-TAAA-ATTTTTAAAAATTAAAAAATA
271326 TTAAAATTT
1 TTAAAATTT
271335 AAAAAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
25 1 0.03
26 8 0.25
27 5 0.16
28 12 0.38
29 6 0.19
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
TTAAAATTTTTAAAAATTAAAAAATA
Found at i:281194 original size:94 final size:94
Alignment explanation
Indices: 280901--281263 Score: 463
Period size: 96 Copynumber: 3.9 Consensus size: 94
280891 CCCGCATGCA
* * *
280901 AATGAAGCTGAAACATCGATTCAAAGTTATATATACATCCAAATTCAATGGAAAATACAGCCGAC
1 AATGAAGCTGAAAAATCGATTCAAAGTTATATATACATTCAAATTCAATGGAAAATACAGCCGAT
*
280966 TAAAGGAA-AAAAGAAAACCCAAAAATCCC
66 TAAA-GAAGAAAAAAAAACCCAAAAATCCC
* * * * * *
280995 AGTGAAGCTTAAAAATTGACTCAAATTTTTATATATACATTCAAATTCAA-AGAAAAGTACAGCC
1 AATGAAGCTGAAAAATCGATTCAAA--GTTATATATACATTCAAATTCAATGGAAAA-TACAGCC
*
281059 AATT--A-AAG-AAAAAAAA--CAAAAATCCC
63 GATTAAAGAAGAAAAAAAAACCCAAAAATCCC
* *
281085 AATGAAGCCGAAAAATCGGTTCAAAGTTATATATACATTCAAATTCAATGGAAAATACAGCCGAT
1 AATGAAGCTGAAAAATCGATTCAAAGTTATATATACATTCAAATTCAATGGAAAATACAGCCGAT
281150 TAAAGAAGAAAAAAAAACCCAAAAATCCC
66 TAAAGAAGAAAAAAAAACCCAAAAATCCC
* *
281179 AATGAAGCTGAAAAATCGATTCGAAGTTATATATACATATTCAAATTCAATGGAAAACACAGCCG
1 AATGAAGCTGAAAAATCGATTCAAAGTTATATATAC--ATTCAAATTCAATGGAAAATACAGCCG
*
281244 ATTTAAGAAGAAAATAAAAA
64 ATTAAAGAAGAAAA-AAAAA
281264 GAACCCAAAA
Statistics
Matches: 230, Mismatches: 25, Indels: 25
0.82 0.09 0.09
Matches are distributed among these distances:
88 32 0.14
89 5 0.02
90 30 0.13
91 3 0.01
92 17 0.07
94 64 0.28
95 5 0.02
96 69 0.30
97 5 0.02
ACGTcount: A:0.51, C:0.16, G:0.12, T:0.21
Consensus pattern (94 bp):
AATGAAGCTGAAAAATCGATTCAAAGTTATATATACATTCAAATTCAATGGAAAATACAGCCGAT
TAAAGAAGAAAAAAAAACCCAAAAATCCC
Found at i:282140 original size:7 final size:7
Alignment explanation
Indices: 282128--282152 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
282118 GTCAAGACCA
282128 AAATTTC
1 AAATTTC
282135 AAATTTC
1 AAATTTC
282142 AAATTTC
1 AAATTTC
282149 AAAT
1 AAAT
282153 AATATAGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATTTC
Found at i:284409 original size:29 final size:29
Alignment explanation
Indices: 284367--284453 Score: 88
Period size: 29 Copynumber: 2.9 Consensus size: 29
284357 TTGGCCTTAT
284367 TTGATTCCT-TTTAATAATATAAGGACTAAA
1 TTGA-TCCTATTTAATAATA-AAGGACTAAA
* *
284397 TTGAT-CTATTTAATAGTAAAGGGACTAAT
1 TTGATCCTATTTAATAATAAA-GGACTAAA
*
284426 TTGATCCTATCTATATAATAGAAGGACT
1 TTGATCCTATTTA-ATAATA-AAGGACT
284454 TAGAAAATAC
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
28 4 0.08
29 22 0.46
30 10 0.21
31 10 0.21
32 2 0.04
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (29 bp):
TTGATCCTATTTAATAATAAAGGACTAAA
Found at i:290001 original size:55 final size:55
Alignment explanation
Indices: 289935--290044 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
289925 ATTGCCATTG
289935 CAATTTTTAAGTGATCACATGATTTCAATTTTCTTAGTCTTCTGATTTTGATTCA
1 CAATTTTTAAGTGATCACATGATTTCAATTTTCTTAGTCTTCTGATTTTGATTCA
289990 CAATTTTTAAGTGATCACATGATTTCAATTTTCTTAGTCTTCTGATTTTGATTCA
1 CAATTTTTAAGTGATCACATGATTTCAATTTTCTTAGTCTTCTGATTTTGATTCA
290045 GAATACACGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.25, C:0.15, G:0.11, T:0.49
Consensus pattern (55 bp):
CAATTTTTAAGTGATCACATGATTTCAATTTTCTTAGTCTTCTGATTTTGATTCA
Found at i:290019 original size:25 final size:25
Alignment explanation
Indices: 289935--290021 Score: 75
Period size: 25 Copynumber: 3.3 Consensus size: 25
289925 ATTGCCATTG
289935 CAATTTTTAAGTGATCACATGATTT
1 CAATTTTTAAGTGATCACATGATTT
* ** ** *
289960 CAATTTTCTTAGTCTTCTGATTTTGATTCA
1 CAATTTT-TAAGTGATC--A-CATGATT-T
289990 CAATTTTTAAGTGATCACATGATTT
1 CAATTTTTAAGTGATCACATGATTT
290015 CAATTTT
1 CAATTTT
290022 CTTAGTCTTC
Statistics
Matches: 45, Mismatches: 12, Indels: 10
0.67 0.18 0.15
Matches are distributed among these distances:
25 14 0.31
26 11 0.24
27 1 0.02
28 1 0.02
29 11 0.24
30 7 0.16
ACGTcount: A:0.28, C:0.14, G:0.10, T:0.48
Consensus pattern (25 bp):
CAATTTTTAAGTGATCACATGATTT
Found at i:292646 original size:34 final size:34
Alignment explanation
Indices: 292603--292668 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
292593 AGTAAAATGT
*
292603 TTTCCGTAAAATGATTT-TTGAAAAATATTTTAC
1 TTTCCGTAAAATGATTTACTGAAAAATATTTTAC
*
292636 TTTCCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTCC-GTAAAATGATTTACTGAAAAATATTTT
292669 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.41
35 12 0.41
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.45
Consensus pattern (34 bp):
TTTCCGTAAAATGATTTACTGAAAAATATTTTAC
Found at i:306101 original size:31 final size:30
Alignment explanation
Indices: 306066--306134 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 30
306056 ATTTAAAAAT
*
306066 AGTTATTGAATTATTTAAAAGTATTTATTTA
1 AGTTATT-AACTATTTAAAAGTATTTATTTA
* * *
306097 AGTTACTTAACTATTTGAAATTTTTTATTTA
1 AGTTA-TTAACTATTTAAAAGTATTTATTTA
306128 AGTTATT
1 AGTTATT
306135 TAGCTGCTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 2 0.06
31 29 0.88
32 2 0.06
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.54
Consensus pattern (30 bp):
AGTTATTAACTATTTAAAAGTATTTATTTA
Found at i:306991 original size:16 final size:16
Alignment explanation
Indices: 306951--307008 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
306941 GTTTTCGAAT
*
306951 TTATTTTAATTTAGAGAA
1 TTATTTTAAATTA-A-AA
* * *
306969 GTTATTTTCAGTTTAAA
1 -TTATTTTAAATTAAAA
306986 TTATTTTAAATTAAAA
1 TTATTTTAAATTAAAA
307002 TTATTTT
1 TTATTTT
307009 TTATATTCGA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
16 20 0.61
17 2 0.06
18 1 0.03
19 10 0.30
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (16 bp):
TTATTTTAAATTAAAA
Found at i:307081 original size:15 final size:14
Alignment explanation
Indices: 307039--307081 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
307029 TAAATTTAAT
*
307039 AATTAAAATTTTTA
1 AATTAAATTTTTTA
*
307053 AATTAAATCATTTTA
1 AATTAAAT-TTTTTA
307068 AATTTAAATTTTTT
1 AA-TTAAATTTTTT
307082 CATATATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 7 0.29
15 11 0.46
16 6 0.25
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (14 bp):
AATTAAATTTTTTA
Found at i:317805 original size:6 final size:6
Alignment explanation
Indices: 317794--317895 Score: 204
Period size: 6 Copynumber: 17.0 Consensus size: 6
317784 TCCCACCATT
317794 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
317842 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
317890 CATATA
1 CATATA
317896 GTGATGTTGT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 96 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Found at i:318206 original size:12 final size:12
Alignment explanation
Indices: 318189--318224 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
318179 TTTTAGCCAT
318189 ACATATGCATAA
1 ACATATGCATAA
* *
318201 ACATATACATAT
1 ACATATGCATAA
318213 ACATATGCATAA
1 ACATATGCATAA
318225 GTTTTTTGGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (12 bp):
ACATATGCATAA
Found at i:322663 original size:26 final size:26
Alignment explanation
Indices: 322632--322682 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
322622 CATTAAATAA
322632 TTAAAAATAGACCAT-AAATAATGTAG
1 TTAAAAA-AGACCATAAAATAATGTAG
**
322658 TTAAAAAATTCCATAAAATAATGTA
1 TTAAAAAAGACCATAAAATAATGTA
322683 TATATACATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.29
Consensus pattern (26 bp):
TTAAAAAAGACCATAAAATAATGTAG
Found at i:339275 original size:26 final size:26
Alignment explanation
Indices: 339245--339297 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
339235 AGTAGGGATG
*
339245 AAAACACGATTTGATTCAATTCGATA
1 AAAACACGATTCGATTCAATTCGATA
339271 AAAACACGATTCGATTCAATTCGATA
1 AAAACACGATTCGATTCAATTCGATA
339297 A
1 A
339298 GGTTGAAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.28
Consensus pattern (26 bp):
AAAACACGATTCGATTCAATTCGATA
Found at i:343959 original size:81 final size:81
Alignment explanation
Indices: 343813--343974 Score: 193
Period size: 81 Copynumber: 2.0 Consensus size: 81
343803 TTTGCTTAAT
* * * * * * *
343813 GTACCTTTTTGAATTTGTGATAGATTTTCAGTGGGAATTTATTGATATTCTTTGTCACTTACTTG
1 GTACATTTTTGAATTTGTAATAAATTTTCAGTGGGAAATTATTGAGATTCTTTATCACATACTTG
343878 TCTATCTTGGCTGTTG
66 TCTATCTTGGCTGTTG
* * *
343894 GTACATTTTTTAATTTGTAATAAATTTTCAGTGGGAAAATT-TTGCAGA-TGTTTATCACATGCT
1 GTACATTTTTGAATTTGTAATAAATTTTCAGTGGG-AAATTATTG-AGATTCTTTATCACATACT
*
343957 TGTGTATCTTGGCTGTTG
64 TGTCTATCTTGGCTGTTG
343975 ACTTCAGAAT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
81 62 0.91
82 6 0.09
ACGTcount: A:0.22, C:0.11, G:0.20, T:0.48
Consensus pattern (81 bp):
GTACATTTTTGAATTTGTAATAAATTTTCAGTGGGAAATTATTGAGATTCTTTATCACATACTTG
TCTATCTTGGCTGTTG
Found at i:348553 original size:7 final size:7
Alignment explanation
Indices: 348541--348566 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
348531 AACAATTAGA
348541 TTTAAAT
1 TTTAAAT
348548 TTTAAAT
1 TTTAAAT
348555 TTTAAAT
1 TTTAAAT
348562 TTTAA
1 TTTAA
348567 GTCGTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TTTAAAT
Found at i:351298 original size:18 final size:18
Alignment explanation
Indices: 351267--351301 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
351257 TTTCAGCAGC
**
351267 AAAGATTTCGACTTTGGG
1 AAAGATTTAAACTTTGGG
351285 AAAGATTTAAACTTTGG
1 AAAGATTTAAACTTTGG
351302 ATGAGTGGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (18 bp):
AAAGATTTAAACTTTGGG
Found at i:366801 original size:30 final size:30
Alignment explanation
Indices: 366765--366853 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 30
366755 TAATATATAG
*
366765 ACTTTGATTTGGTGCAATCATACACATAAA
1 ACTTTGATTTGGTTCAATCATACACATAAA
* * *
366795 ACTTTGATTGTGGTTCAAAT-GTATACATGAA
1 ACTTTGATT-TGGTTC-AATCATACACATAAA
* *
366826 ACTTTAATTTTGATTCAATCATACACAT
1 ACTTTGA-TTTGGTTCAATCATACACAT
366854 TTAAAGAAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
30 12 0.26
31 30 0.64
32 5 0.11
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (30 bp):
ACTTTGATTTGGTTCAATCATACACATAAA
Found at i:368318 original size:19 final size:20
Alignment explanation
Indices: 368279--368320 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
368269 AATTAATTTT
* *
368279 TATTATTAAAGAATCAATAA
1 TATTAATAAAGAATAAATAA
368299 TATTAATAAA-AATAAATAA
1 TATTAATAAAGAATAAATAA
368318 TAT
1 TAT
368321 AATTGAAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
TATTAATAAAGAATAAATAA
Found at i:369911 original size:11 final size:11
Alignment explanation
Indices: 369895--369937 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
369885 CGATAGTTAT
*
369895 ATTAAATTTTA
1 ATTAAATTTAA
369906 ATTAAATTTAGA
1 ATTAAATTTA-A
369918 ATTAAA-TTAA
1 ATTAAATTTAA
369928 ATTAAATTTA
1 ATTAAATTTA
369938 TAAATAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 7 0.24
11 15 0.52
12 7 0.24
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:369933 original size:22 final size:23
Alignment explanation
Indices: 369895--369937 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
369885 CGATAGTTAT
*
369895 ATTAAATTTTAATTAAATTTAGA
1 ATTAAATTTAAATTAAATTTAGA
369918 ATTAAA-TTAAATTAAATTTA
1 ATTAAATTTAAATTAAATTTA
369938 TAAATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTAAATTTAAATTAAATTTAGA
Found at i:369945 original size:17 final size:17
Alignment explanation
Indices: 369895--369945 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
369885 CGATAGTTAT
369895 ATTAAATTT-TAATTAA
1 ATTAAATTTATAATTAA
369911 ATTTAGAA-TTA-AATTAA
1 A-TTA-AATTTATAATTAA
*
369928 ATTAAATTTATAAATAA
1 ATTAAATTTATAATTAA
369945 A
1 A
369946 AAATATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
15 2 0.07
16 7 0.24
17 18 0.62
18 2 0.07
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
ATTAAATTTATAATTAA
Found at i:372633 original size:19 final size:19
Alignment explanation
Indices: 372610--372653 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
372600 GGCAGTAAGG
372610 AAAAATGGAGATGAACA-ATT
1 AAAAA-GGAGATGAA-AGATT
*
372630 AAAAAGTAGATGAAAGATT
1 AAAAAGGAGATGAAAGATT
372649 AAAAA
1 AAAAA
372654 AAAAATACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 16 0.73
20 5 0.23
ACGTcount: A:0.61, C:0.02, G:0.18, T:0.18
Consensus pattern (19 bp):
AAAAAGGAGATGAAAGATT
Found at i:378034 original size:9 final size:8
Alignment explanation
Indices: 378016--378045 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
378006 TATATAGTGC
378016 AAAAATAT
1 AAAAATAT
378024 AAAACATAT
1 AAAA-ATAT
378033 AAAAATAT
1 AAAAATAT
378041 AAAAA
1 AAAAA
378046 AAATAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (8 bp):
AAAAATAT
Found at i:378049 original size:11 final size:10
Alignment explanation
Indices: 378033--378067 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
378023 TAAAACATAT
378033 AAAAATATAAA
1 AAAAATA-AAA
378044 AAAAATAAAA
1 AAAAATAAAA
378054 AAAAATAAAA
1 AAAAATAAAA
378064 AAAA
1 AAAA
378068 TCAAATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 17 0.71
11 7 0.29
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (10 bp):
AAAAATAAAA
Found at i:378055 original size:19 final size:19
Alignment explanation
Indices: 378016--378068 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
378006 TATATAGTGC
* *
378016 AAAAATAT--AAAACATAT
1 AAAAATATAAAAAAAATAA
378033 AAAAATATAAAAAAAATAA
1 AAAAATATAAAAAAAATAA
*
378052 AAAAAAATAAAAAAAAT
1 AAAAATATAAAAAAAAT
378069 CAAATTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
17 8 0.26
19 23 0.74
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (19 bp):
AAAAATATAAAAAAAATAA
Found at i:378066 original size:9 final size:9
Alignment explanation
Indices: 378016--378068 Score: 61
Period size: 9 Copynumber: 5.7 Consensus size: 9
378006 TATATAGTGC
*
378016 AAAAATATA
1 AAAAATAAA
*
378025 AAACATATAA
1 AAAAATA-AA
*
378035 AAATATAAA
1 AAAAATAAA
378044 AAAAATAAAA
1 AAAAAT-AAA
378054 AAAAATAAA
1 AAAAATAAA
378063 AAAAAT
1 AAAAAT
378069 CAAATTTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
9 22 0.58
10 16 0.42
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (9 bp):
AAAAATAAA
Found at i:378744 original size:17 final size:17
Alignment explanation
Indices: 378722--378755 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
378712 TATCCACTTT
378722 TTATATTATTATTATTA
1 TTATATTATTATTATTA
*
378739 TTATATTATTTTTATTA
1 TTATATTATTATTATTA
378756 CTATGGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTATATTATTATTATTA
Found at i:378754 original size:14 final size:15
Alignment explanation
Indices: 378719--378755 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
378709 TTTTATCCAC
378719 TTTTTA-TATTATTA
1 TTTTTATTATTATTA
*
378733 TTATTATTA-TATTA
1 TTTTTATTATTATTA
378747 TTTTTATTA
1 TTTTTATTA
378756 CTATGGTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 18 0.90
15 2 0.10
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTTATTATTATTA
Found at i:382265 original size:17 final size:17
Alignment explanation
Indices: 382245--382277 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
382235 TATAAAAATA
382245 TAAAAATTAAATTATAT
1 TAAAAATTAAATTATAT
*
382262 TAAAAGTTAAATTATA
1 TAAAAATTAAATTATA
382278 AGATTAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
TAAAAATTAAATTATAT
Found at i:385522 original size:26 final size:26
Alignment explanation
Indices: 385460--385527 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 26
385450 TGACAATGAA
*
385460 AATGATAATAATAATAATAATAATAT
1 AATGATAAAAATAATAATAATAATAT
*
385486 AATG-TAGAAAATAATGATAATAATAT
1 AATGATA-AAAATAATAATAATAATAT
*
385512 -ATGAATAAAAAAAATA
1 AATG-ATAAAAATAATA
385528 TACATACGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
25 5 0.14
26 28 0.80
27 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.29
Consensus pattern (26 bp):
AATGATAAAAATAATAATAATAATAT
Found at i:385525 original size:29 final size:29
Alignment explanation
Indices: 385466--385527 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
385456 TGAAAATGAT
** *
385466 AATAATAATAATAATAATATAATGTAGAA
1 AATAATAATAATAATAATATAATAAAAAA
*
385495 AATAATGATAATAAT-ATATGAATAAAAAA
1 AATAATAATAATAATAATAT-AATAAAAAA
385524 AATA
1 AATA
385528 TACATACGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 4 0.14
29 24 0.86
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (29 bp):
AATAATAATAATAATAATATAATAAAAAA
Found at i:385724 original size:11 final size:11
Alignment explanation
Indices: 385704--385755 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
385694 AAAATAATAA
385704 ATAT-ATATAT
1 ATATAATATAT
385714 ATATAATATAT
1 ATATAATATAT
*
385725 ACATAATATAGT
1 ATATAATATA-T
*
385737 AT-TAAAAATAT
1 ATAT-AATATAT
385748 ATATAATA
1 ATATAATA
385756 CATACACATT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
10 4 0.12
11 22 0.65
12 8 0.24
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (11 bp):
ATATAATATAT
Found at i:385753 original size:23 final size:23
Alignment explanation
Indices: 385682--385755 Score: 73
Period size: 23 Copynumber: 3.2 Consensus size: 23
385672 TGATATTAAA
*
385682 AATATATACATAAAAATA-ATA-
1 AATATATATATAAAAATATATAT
*
385703 AATATATATATATATAATATATACAT
1 AATATATATATA-A-AA-ATATATAT
385729 AATATAGTAT-TAAAAATATATAT
1 AATATA-TATATAAAAATATATAT
385752 AATA
1 AATA
385756 CATACACATT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
21 11 0.25
22 1 0.02
23 13 0.30
24 5 0.11
25 3 0.07
26 8 0.18
27 3 0.07
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (23 bp):
AATATATATATAAAAATATATAT
Found at i:386011 original size:24 final size:24
Alignment explanation
Indices: 385944--386000 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
385934 TAGTAATTAT
* * * *
385944 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
385968 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
385992 AATAATAAT
1 AATAATAAT
386001 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:387527 original size:44 final size:44
Alignment explanation
Indices: 387464--387875 Score: 670
Period size: 44 Copynumber: 9.5 Consensus size: 44
387454 AGGAACACCG
* *
387464 ATCTGTTATTTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
387508 ATCTGTTATCTTCGATCTGCTCTCCGCTGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
387552 ATCTGTTATCTTCGATCTGTTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
387596 ATC----ATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
387636 ATCTGTTATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
387680 ATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
387724 ATCTGTTATCTTCGATTTGCTCTCCACCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
387768 ATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
387812 ATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
387856 ATCTGTTATCTTCGATCTGC
1 ATCTGTTATCTTCGATCTGC
387876 CCAAATCTGT
Statistics
Matches: 342, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
40 37 0.11
44 305 0.89
ACGTcount: A:0.22, C:0.33, G:0.16, T:0.29
Consensus pattern (44 bp):
ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
Found at i:387884 original size:24 final size:24
Alignment explanation
Indices: 387852--387899 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
387842 TACAGAGACG
387852 CCAAATCTGTTATCTTCGATCTGC
1 CCAAATCTGTTATCTTCGATCTGC
387876 CCAAATCTGTTATCTTCGATCTGC
1 CCAAATCTGTTATCTTCGATCTGC
387900 TCTCCGCCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (24 bp):
CCAAATCTGTTATCTTCGATCTGC
Found at i:387924 original size:68 final size:68
Alignment explanation
Indices: 387808--387943 Score: 227
Period size: 68 Copynumber: 2.0 Consensus size: 68
387798 TACAGAGACG
* *
387808 CCAAATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATC
1 CCAAATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAAACACCAAATCTGTTATCTTCGATC
387873 TGC
66 TGC
* * *
387876 CCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAAATACCAAATCTGTTATCTTCGATC
1 CCAAATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAAACACCAAATCTGTTATCTTCGATC
387941 TGC
66 TGC
387944 TATCCGCCGC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.24, C:0.32, G:0.13, T:0.32
Consensus pattern (68 bp):
CCAAATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAAACACCAAATCTGTTATCTTCGATC
TGC
Found at i:387939 original size:44 final size:44
Alignment explanation
Indices: 387876--388018 Score: 186
Period size: 44 Copynumber: 3.3 Consensus size: 44
387866 TTCGATCTGC
* *
387876 CCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAAATA
1 CCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATG
*
387920 CCAAATCTGTTATCTTCGATCTGCTATCCGCCGCTACAGAGATG
1 CCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATG
* * * * *
387964 CAAAATC----ATCTTCGATCTGTTCTCCGTCACTACAGAGACG
1 CCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATG
388004 CCAAATCTGTTATCT
1 CCAAATCTGTTATCT
388019 GTTTCAAGGA
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
40 34 0.40
44 51 0.60
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (44 bp):
CCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATG
Found at i:387961 original size:112 final size:112
Alignment explanation
Indices: 387764--387970 Score: 324
Period size: 112 Copynumber: 1.8 Consensus size: 112
387754 TACAGAGACG
* *
387764 CCAAATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTATTATCTTCGATC
1 CCAAATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAAACACCAAATCTATTATCTTCGATC
* *
387829 TACTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGC
66 TACTATCCGCCGCTACAGAGACGCAAAATCTGTTATCTTCGATCTGC
* * * *
387876 CCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAAATACCAAATCTGTTATCTTCGATC
1 CCAAATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAAACACCAAATCTATTATCTTCGATC
* *
387941 TGCTATCCGCCGCTACAGAGATGCAAAATC
66 TACTATCCGCCGCTACAGAGACGCAAAATC
387971 ATCTTCGATC
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
112 85 1.00
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (112 bp):
CCAAATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAAACACCAAATCTATTATCTTCGATC
TACTATCCGCCGCTACAGAGACGCAAAATCTGTTATCTTCGATCTGC
Found at i:387997 original size:40 final size:40
Alignment explanation
Indices: 387931--388010 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
387921 CAAATCTGTT
* *
387931 ATCTTCGATCTGCTATCCGCCGCTACAGAGATGCAAAATC
1 ATCTTCGATCTGCTATCCGCCACTACAGAGACGCAAAATC
* * * *
387971 ATCTTCGATCTGTTCTCCGTCACTACAGAGACGCCAAATC
1 ATCTTCGATCTGCTATCCGCCACTACAGAGACGCAAAATC
388011 TGTTATCTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (40 bp):
ATCTTCGATCTGCTATCCGCCACTACAGAGACGCAAAATC
Found at i:400443 original size:3 final size:3
Alignment explanation
Indices: 400435--400469 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
400425 TGAAAATGAC
400435 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
400470 CAACAATAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:400482 original size:9 final size:9
Alignment explanation
Indices: 400433--400481 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
400423 AATGAAAATG
400433 ACAATAATA
1 ACAATAATA
*
400442 ATAATAATA
1 ACAATAATA
*
400451 ATAATAATA
1 ACAATAATA
*
400460 ATAATAATA
1 ACAATAATA
*
400469 ACAACAATA
1 ACAATAATA
400478 ACAA
1 ACAA
400482 CGTAGAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
ACAATAATA
Found at i:400727 original size:24 final size:24
Alignment explanation
Indices: 400678--400730 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
400668 TAATACTAAT
* * *
400678 AATAAATACAATAATAGTCGTAAA
1 AATAAACACAATAATAATCATAAA
*
400702 AATAAACACAATAATAATCATGAA
1 AATAAACACAATAATAATCATAAA
400726 AATAA
1 AATAA
400731 TGTGTACATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.62, C:0.09, G:0.06, T:0.23
Consensus pattern (24 bp):
AATAAACACAATAATAATCATAAA
Found at i:401581 original size:13 final size:13
Alignment explanation
Indices: 401560--401589 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
401550 TTCGAATAAT
*
401560 AAAATAAAAAGAA
1 AAAAAAAAAAGAA
401573 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
401586 AAAA
1 AAAA
401590 CCTTAAGCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.03
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:403151 original size:24 final size:24
Alignment explanation
Indices: 403119--403201 Score: 121
Period size: 24 Copynumber: 3.5 Consensus size: 24
403109 AAATCTGCAT
* * *
403119 ACATAGTGCTATACAAGTCCGCAC
1 ACATAGTGCCATACAAATTCGCAC
*
403143 ACATAGTGCCATACAATTTCGCAC
1 ACATAGTGCCATACAAATTCGCAC
*
403167 ACATAGTGCCATTCAAATTCGCAC
1 ACATAGTGCCATACAAATTCGCAC
403191 ACATAGTGCCA
1 ACATAGTGCCA
403202 AAGTCAATTC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (24 bp):
ACATAGTGCCATACAAATTCGCAC
Found at i:411198 original size:24 final size:23
Alignment explanation
Indices: 411167--411250 Score: 105
Period size: 24 Copynumber: 3.5 Consensus size: 23
411157 TTTAAATCCA
*
411167 CACACATAGTGCTATAAAAGTCCG
1 CACACATAGTGCTATAAAA-TTCG
* *
411191 CACACATAGTGCCATACAATTTCG
1 CACACATAGTGCTATA-AAATTCG
*
411215 CACACATAGTGCTATTCAAATTCG
1 CACACATAGTGCTA-TAAAATTCG
411239 CACACATAGTGC
1 CACACATAGTGC
411251 CGAAGTCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
24 49 0.94
25 3 0.06
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (23 bp):
CACACATAGTGCTATAAAATTCG
Found at i:415022 original size:20 final size:20
Alignment explanation
Indices: 414997--415047 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
414987 TGTCAGTCCT
* *
414997 ATGAATAGTGAAGTTAAGTC
1 ATGAATAGTGAAGTCAAATC
415017 ATGAATAGTGAAGTCAAATC
1 ATGAATAGTGAAGTCAAATC
*
415037 ATGAACAGTGA
1 ATGAATAGTGA
415048 TAATATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.25
Consensus pattern (20 bp):
ATGAATAGTGAAGTCAAATC
Found at i:427865 original size:364 final size:362
Alignment explanation
Indices: 427180--427883 Score: 1122
Period size: 364 Copynumber: 1.9 Consensus size: 362
427170 TTTGAGAGTG
* * * * ** *
427180 AATCTTATTTTCCATGTGTATAATATGTACATAACCAATGGCTTTTCATACATAAGTTTTCTCTC
1 AATCTTATTTTCCAGGTGTACAACAGGTACATAACCAATAACTTTTCATACATAAGTCTTCTCTC
* *
427245 TTGCAAGTTCTCATCAGTAATATTTTACCACATAATTTTAATTGATAACTTATTCTAAATATTGT
66 TTACAAGTTCTCATCAGTAATATTTTACCACATAATTTTAATTGAGAACTTATTCTAAATATTGT
* *
427310 AGAGTTATACTCACAGTTTTTAAAAAATACTTGTAACTTTAGATGCATCCAACCATAATAAGCTT
131 AGAGTTATACTCACAGTTTTTAAAAAAAACTTGCAACTTTAGATGCATCCAACCATAATAAGCTT
* * *
427375 TCGATAGAATTATCATATTCTATTGCTCATGAGCAGATCTTTTACAATCAAATATTTTGCTTTCA
196 TAGATAGAATTATCATATTCTATTGCTCATAAGCAGATCTTTCACAATCAAATATTTTGCTTTCA
* * *
427440 ACCCTTTAATAGGGATAATGACAAAAGAATATCATAAATATTATAAATTAATAATTCAATCCTCT
261 ACCCTTTAATAAGGATAATGACAAAAGAATATCATAAATATTATAAATTAATAACTCAATCC-CC
427505 TTTTTTTATTCATATGCCAAAATCTTCAAATGCCCAAA
325 TTTTTTTATTCATATGCCAAAATCTTCAAATGCCCAAA
*
427543 AATC-TATTTTCCAGGTGTACAACAGGTACATAACCAATAACTTTTCATATATAAGTCTTCTCTC
1 AATCTTATTTTCCAGGTGTACAACAGGTACATAACCAATAACTTTTCATACATAAGTCTTCTCTC
* * *
427607 TTACAAGTTCTCATCAGTAATATTTTACTACATAATTTTAATTGAGAACTTATTTTGAATATTGT
66 TTACAAGTTCTCATCAGTAATATTTTACCACATAATTTTAATTGAGAACTTATTCTAAATATTGT
* *
427672 AGAGTTATACTCACAGTTTTTAAAAAAAAAACTTGCAACTTTAGGTGCATCCAACCATAATAAGT
131 AGAGTTATACTCACAGTTTTT--AAAAAAAACTTGCAACTTTAGATGCATCCAACCATAATAAGC
* * *
427737 TTTAGATAGAATTATCATATTCTATTGCTCATAAGTATATCTTTCACAGTCAAATATTTTGCTTT
194 TTTAGATAGAATTATCATATTCTATTGCTCATAAGCAGATCTTTCACAATCAAATATTTTGCTTT
* *
427802 TAACCCTTTAATAAGGATGATGACAAAAGAATATCATAAATATTATAAATTAATAACTCAATCCC
259 CAACCCTTTAATAAGGATAATGACAAAAGAATATCATAAATATTATAAATTAATAACTCAATCCC
427867 CTTTTTTTATTCATATG
324 CTTTTTTTATTCATATG
427884 AAATATAATC
Statistics
Matches: 311, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
362 133 0.43
363 21 0.07
364 157 0.50
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (362 bp):
AATCTTATTTTCCAGGTGTACAACAGGTACATAACCAATAACTTTTCATACATAAGTCTTCTCTC
TTACAAGTTCTCATCAGTAATATTTTACCACATAATTTTAATTGAGAACTTATTCTAAATATTGT
AGAGTTATACTCACAGTTTTTAAAAAAAACTTGCAACTTTAGATGCATCCAACCATAATAAGCTT
TAGATAGAATTATCATATTCTATTGCTCATAAGCAGATCTTTCACAATCAAATATTTTGCTTTCA
ACCCTTTAATAAGGATAATGACAAAAGAATATCATAAATATTATAAATTAATAACTCAATCCCCT
TTTTTTATTCATATGCCAAAATCTTCAAATGCCCAAA
Found at i:437551 original size:42 final size:41
Alignment explanation
Indices: 437372--437679 Score: 133
Period size: 42 Copynumber: 7.5 Consensus size: 41
437362 AAGTGGTGAA
* * *
437372 GGAGGTGGAGCTGGTGGTGGTTATGGAGGAGCCGGTGGACAA
1 GGAGGTGGTGCTGGTGGTGGTTATGGAGGAGCTGG-GGACAT
* * * *
437414 GGAGGTGGTGCTGGTGGTGG-CAGTGGTGGAGGC-GGAGCCAGT
1 GGAGGTGGTGCTGGTGGTGGTTA-TGGAGGA-GCTGGGGACA-T
* * * * *
437456 GCAGGTGGTGCT--T-CTGGGTATGGCAATGGAGGTGGCGA-A-
1 GGAGGTGGTGCTGGTGGTGGTTATGG--A-GGAGCTGGGGACAT
** *
437495 GGAGGTGGAACTGGTAGTGGTTATGGAGGAGCTGGTGGACAT
1 GGAGGTGGTGCTGGTGGTGGTTATGGAGGAGCTGG-GGACAT
* * **
437537 GGAGGTGGTGCTGGTGGTGG-CAGTGGTGGAG--GAAGAGCTAGT
1 GGAGGTGGTGCTGGTGGTGGTTA-TGGAGGAGCTGGGGA-C-A-T
* * * * *
437579 GCAGGTGGTGCT--T-CTGGGTATGGCAATGGAGGTGGCGA-A-
1 GGAGGTGGTGCTGGTGGTGGTTATGG--A-GGAGCTGGGGACAT
* *
437618 GGAGGTGGAGCTGGTGGTGGTTATGGAGGAGCTGGTGAACAT
1 GGAGGTGGTGCTGGTGGTGGTTATGGAGGAGCTGG-GGACAT
437660 GGAGGTGGTGCTGGTGGTGG
1 GGAGGTGGTGCTGGTGGTGG
437680 CAGTGGTGGA
Statistics
Matches: 195, Mismatches: 41, Indels: 60
0.66 0.14 0.20
Matches are distributed among these distances:
39 47 0.24
40 11 0.06
41 13 0.07
42 119 0.61
43 2 0.01
44 3 0.02
ACGTcount: A:0.17, C:0.09, G:0.52, T:0.22
Consensus pattern (41 bp):
GGAGGTGGTGCTGGTGGTGGTTATGGAGGAGCTGGGGACAT
Found at i:437708 original size:42 final size:41
Alignment explanation
Indices: 437539--437713 Score: 112
Period size: 42 Copynumber: 4.2 Consensus size: 41
437529 GTGGACATGG
* * *
437539 AGGTGGTGCTGGTGGTGGCAGTGGTGGAGGAAGAGCTAGTGC
1 AGGTGGTGCTGGTGGTGGCAGTGGAGGAGGCAGAAC-AGTGC
** * *
437581 AGGTGGTGCTTCTGGGTATGGCAATGGAGGTGGC-G-A-AG-G-
1 AGGTGGTGCTGGT-GG--TGGCAGTGGAGGAGGCAGAACAGTGC
* * ** *
437620 AGGTGGAGCTGGTGGTGGTTA-TGGAGGAGCTGGTGAACA-TGG
1 AGGTGGTGCTGGTGGTGG-CAGTGGAGGAG--GCAGAACAGTGC
*
437662 AGGTGGTGCTGGTGGTGGCAGTGGTGGAGGCAGAACTAGTGC
1 AGGTGGTGCTGGTGGTGGCAGTGGAGGAGGCAGAAC-AGTGC
437704 AGGTGGTGCT
1 AGGTGGTGCT
437714 TCTAGGTATG
Statistics
Matches: 100, Mismatches: 19, Indels: 28
0.68 0.13 0.19
Matches are distributed among these distances:
36 10 0.10
37 1 0.01
38 3 0.03
39 11 0.11
40 7 0.07
41 6 0.06
42 47 0.47
43 2 0.02
44 1 0.01
45 12 0.12
ACGTcount: A:0.17, C:0.10, G:0.50, T:0.23
Consensus pattern (41 bp):
AGGTGGTGCTGGTGGTGGCAGTGGAGGAGGCAGAACAGTGC
Found at i:437733 original size:69 final size:69
Alignment explanation
Indices: 437658--437805 Score: 215
Period size: 69 Copynumber: 2.1 Consensus size: 69
437648 GCTGGTGAAC
* * * *
437658 ATGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGCAGAACTAGTGCAGGTGGTGCTTCTAGGTAT
1 ATGGAGGTGGTACTGGTGGCGGCAGTGGTGGAGGCAGAACTAGTGCAAGTGGCGCTTCTAGGTAT
437723 GGCA
66 GGCA
* * * * *
437727 ATGGAGGTGGTACTGGTGGCGGTAGTGGTGGAGGCGGAGCTAGTGTAAGTGGCGCTTCTGGGTAT
1 ATGGAGGTGGTACTGGTGGCGGCAGTGGTGGAGGCAGAACTAGTGCAAGTGGCGCTTCTAGGTAT
437792 GGCA
66 GGCA
437796 ATGGAGGTGG
1 ATGGAGGTGG
437806 CAACGGAGGT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.17, C:0.11, G:0.48, T:0.24
Consensus pattern (69 bp):
ATGGAGGTGGTACTGGTGGCGGCAGTGGTGGAGGCAGAACTAGTGCAAGTGGCGCTTCTAGGTAT
GGCA
Done.